>VSA330 (VSA330Q) /CSM/VS/VSA3-B/VSA330Q.Seq.d/
CGAAAAAACTAAAGCTTTTGAACTCAGAACCAAAAACAAGACTCAATTACTTGAACACCT
CAAGGAACTCAGAACTGAGCTCTCAAGTTTAAGAGTTGCCCAAGTTAAATCACCAAACCC
AAGCAAATTAGCCAAAATCGGTACCGTCCGTAAAGCTATTGCCCGTGTTTTAACTGTTTT
CAACCAAACTCAAAAGAACCATCTCCGTGCTGTCTATTCTAAAAAATCATCAAGCAAGAT
CCCAACTGATCTCCGTTACAAAAAGACTAGAGCCATCAGAAGACGTTTCACCAACAAACA
ATCTAAAGTTGTCACCTTAAGAGTTTCCAAAACTGCCACCAACTTCCCACAAAGAGTTTT
CGCTGTTAAAGCCTAAATTTGCATTTAGATGATTTTAAAAAATAAAATATATTAAAAAAA
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EKTKAFELRTKNKTQLLEHLKELRTELSSLRVAQVKSPNPSKLAKIGTVRKAIARVLTVF
NQTQKNHLRAVYSKKSSSKIPTDLRYKKTRAIRRRFTNKQSKVVTLRVSKTATNFPQRVF
AVKA*ici*milknkiy*kkekkkkkkkkkkkkkkk

Frame A:
rkn*sf*tqnqkqdsit*tpqgtqn*alkfkscps*itkpkqisqnryrp*sycpcfncf
qpnskepspcclf*kiikqdpn*splqkd*shqktfhqqti*schlksfqnchqlptksf
rc*slnlhlddfkk*nilkkrkkkkkkkkkkkkkkk


Frame B:
EKTKAFELRTKNKTQLLEHLKELRTELSSLRVAQVKSPNPSKLAKIGTVRKAIARVLTVF
NQTQKNHLRAVYSKKSSSKIPTDLRYKKTRAIRRRFTNKQSKVVTLRVSKTATNFPQRVF
AVKA*ici*milknkiy*kkekkkkkkkkkkkkkkk


Frame C:
kklkllnsepktrlnylntsrnselssqv*elpklnhqtqan*pksvpsvkllpvf*lfs
tklkrtisvlsilknhqarsqlisvtkrlepsedvsptnnlklsp*efpklpptshkefs
llkpkfafr*f*kikyikkkkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC875 (VSC875Q) /CSM/VS/VSC8-D/VSC875Q.Seq.d/                        819   0.0
VSA330 (VSA330Q) /CSM/VS/VSA3-B/VSA330Q.Seq.d/                        819   0.0
VSJ543 (VSJ543Q) /CSM/VS/VSJ5-B/VSJ543Q.Seq.d/                        811   0.0
VSJ336 (VSJ336Q) /CSM/VS/VSJ3-B/VSJ336Q.Seq.d/                        811   0.0
VSI395 (VSI395Q) /CSM/VS/VSI3-D/VSI395Q.Seq.d/                        811   0.0
VSH858 (VSH858Q) /CSM/VS/VSH8-C/VSH858Q.Seq.d/                        811   0.0
VSG811 (VSG811Q) /CSM/VS/VSG8-A/VSG811Q.Seq.d/                        811   0.0
VSD708 (VSD708Q) /CSM/VS/VSD7-A/VSD708Q.Seq.d/                        811   0.0
VSD254 (VSD254Q) /CSM/VS/VSD2-C/VSD254Q.Seq.d/                        811   0.0
VSC838 (VSC838Q) /CSM/VS/VSC8-B/VSC838Q.Seq.d/                        811   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL132954|AL132954.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T26I12.    46  0.031  2
BZ223087|BZ223087.1 CH230-496G16.TVB CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-496G16, DNA sequence.    46  0.38  1
BE038964|BE038964.1 AB07H02 AB Arabidopsis thaliana cDNA 5' similar to ribosomal protein l35, mRNA sequence.    46  0.38  1
AU226410|AU226410.1 Arabidopsis thaliana cDNA clone:RAFL14-31-M09, 3'-end.    46  0.38  1
AC119946|AC119946.3 Mus musculus clone RP24-406B22, WORKING DRAFT SEQUENCE, 6 unordered pieces.    46  0.38  1
AC115571|AC115571.6 Rattus norvegicus clone CH230-217H14, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.38  1
Z47610|Z47610.1 A. thaliana transcribed sequence; clone TAI212; 5' end; Similar to mRNA for ribosomal protein L35 ; Oriza sativa.    46  0.38  1
AI996565|AI996565.1 701667462 A. thaliana, Columbia Col-0, root-1 Arabidopsis thaliana cDNA clone 701667462, mRNA sequence.    46  0.38  1
CB264903|CB264903.1 24-E015021-035-004-O05-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA clone MPIZp2000O054Q 5-PRIME, mRNA sequence.    46  0.38  1
AL084068|AL084068.1 Arabidopsis thaliana genome survey sequence T7 end of BAC F8C2 of  IGF library from strain Columbia of Arabidopsis thaliana.    46  0.38  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017341_741(AE017341|pid:none) Cryptococcus neoformans var. neo...   126   2e-28
AF548325_1(AF548325|pid:none) Branchiostoma belcheri ribosomal p...   113   2e-24
EU958029_1(EU958029|pid:none) Zea mays clone 1664319 60S ribosom...   112   5e-24
AK059262_1(AK059262|pid:none) Oryza sativa Japonica Group cDNA c...   110   2e-23
BT053501_1(BT053501|pid:none) Medicago truncatula clone MTYFP_FQ...   109   3e-23
(P17078) RecName: Full=60S ribosomal protein L35;  &(Q6ZWV7) Rec...   109   3e-23
AC149264_3(AC149264|pid:none) Medicago truncatula clone mth2-78f...   108   5e-23
EU959220_1(EU959220|pid:none) Zea mays clone 212376 60S ribosoma...   108   5e-23
(Q9M3D2) RecName: Full=60S ribosomal protein L35-3;  &AK227739_1...   108   6e-23
(Q9LZ41) RecName: Full=60S ribosomal protein L35-4;  &AK226248_1...   108   8e-23

 psg: 0.53  gvh: 0.45  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.19  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VSA330 is cyt

>VSA330E.Seq
CGAAAAAACTAAAGCTTTTGAACTCAGAACCAAAAACAAGACTCAATTACTTGAACACCT
CAAGGAACTCAGAACTGAGCTCTCAAGTTTAAGAGTTGCCCAAGTTAAATCACCAAACCC
AAGCAAATTAGCCAAAATCGGTACCGTCCGTAAAGCTATTGCCCGTGTTTTAACTGTTTT
CAACCAAACTCAAAAGAACCATCTCCGTGCTGTCTATTCTAAAAAATCATCAAGCAAGAT
CCCAACTGATCTCCGTTACAAAAAGACTAGAGCCATCAGAAGACGTTTCACCAACAAACA
ATCTAAAGTTGTCACCTTAAGAGTTTCCAAAACTGCCACCAACTTCCCACAAAGAGTTTT
CGCTGTTAAAGCCTAAATTTGCATTTAGATGATTTTAAAAAATAAAATATATTAAAAAAA
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA