>VSA317 (VSA317Q) /CSM/VS/VSA3-A/VSA317Q.Seq.d/
CGGACGCGTGGGCGGACGCGTGGGCAATAAAATGACTTATTCCTTTTTCGTTGATATGAC
ATGTGGTGGTTGCTCAAAAGCTGTAAATGCCATCTTATCTAAAATTGATGGTGTTTCAAA
TATTCAAATTGACCTTGAAAATAAAAAAGTCAGTTGTGAAAGTTCAAAAATGGGAGCAGA
TGAATTATTAAAGAATATTCAAAAAACTGGAAAGAAATGTTCAATTATTGCTTAAATTAG
TAATTGTCAATAATAATAATAATTTAAAATAATATAACATTACCTATATATACACACAAT
TTTTAATTAAATTCCAAGATAAAATGGAGTGTCATTGTTCTTGGGTTCAATGAAAAAAAA
AAAAAAAAACAAAAAAACAAAAAAACAAAAAACTATCAAAAATAAATCTGGTTCTCTTAG
AGATACTCGTTCTAATT

GRVGGRVGNKMTYSFFVDMTCGGCSKAVNAILSKIDGVSNIQIDLENKKVSCESSKMGAD
ELLKNIQKTGKKCSIIA*isncq****fkii*hylyihtifn*ipr*ngvslflgsmkkk
kknkktkkqktiknksgslrdtrsn

Frame A:
rtrgrtrgq*ndlflfr*ydmwwllksckchli*n*wcfkysn*p*k*ksql*kfkngsr
*iikeysknwkemfnycln**lsiiiii*nnitlpiythnf*lnskikwsvivlgfnekk
kkkqknkktknyqk*iwfs*rysf*


Frame B:
GRVGGRVGNKMTYSFFVDMTCGGCSKAVNAILSKIDGVSNIQIDLENKKVSCESSKMGAD
ELLKNIQKTGKKCSIIA*isncq****fkii*hylyihtifn*ipr*ngvslflgsmkkk
kknkktkkqktiknksgslrdtrsn


Frame C:
dawadawaik*lipfsli*hvvvaqkl*mpsylklmvfqifkltlkikksvvkvqkweqm
ny*rifkklernvqlllklvivnnnnnlk*ynityiytqflikfqdkmechcswvq*kkk
kktkkqknkklskinlvlleilvli

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA317 (VSA317Q) /CSM/VS/VSA3-A/VSA317Q.Seq.d/                        492   e-138
VSF556 (VSF556Q) /CSM/VS/VSF5-C/VSF556Q.Seq.d/                        444   e-124
VSD234 (VSD234Q) /CSM/VS/VSD2-B/VSD234Q.Seq.d/                        444   e-124
VSD211 (VSD211Q) /CSM/VS/VSD2-A/VSD211Q.Seq.d/                        444   e-124
VSC847 (VSC847Q) /CSM/VS/VSC8-B/VSC847Q.Seq.d/                        444   e-124
AHJ807 (AHJ807Q) /CSM/AH/AHJ8-A/AHJ807Q.Seq.d/                        424   e-118
AHH803 (AHH803Q) /CSM/AH/AHH8-A/AHH803Q.Seq.d/                        418   e-116
VSK203 (VSK203Q) /CSM/VS/VSK2-A/VSK203Q.Seq.d/                        396   e-109
SSE292 (SSE292Q) /CSM/SS/SSE2-D/SSE292Q.Seq.d/                         50   3e-05
SLD104 (SLD104Q) /CSM/SL/SLD1-A/SLD104Q.Seq.d/                         50   3e-05

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CB258398|CB258398.1 29-E012733-014-002-I16-T7R MPIZ-ADIS-014 Arabidopsis thaliana cDNA clone MPIZp771I162Q 5-PRIME, mRNA sequence.    60  2e-05  1
AL832949|AL832949.1 Homo sapiens mRNA; cDNA DKFZp666K2210 (from clone DKFZp666K2210).    52  3e-05  2
BG918029|BG918029.1 602818977F1 NCI_CGAP_Mam6 Mus musculus cDNA clone IMAGE:4947955 5', mRNA sequence.    56  3e-05  2
BM615669|BM615669.1 17000687147375 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449732747 5', mRNA sequence.    58  9e-05  1
BI692758|BI692758.1 603343237F1 NCI_CGAP_Mam2 Mus musculus cDNA clone IMAGE:5371089 5', mRNA sequence.    58  9e-05  1
BM263710|BM263710.1 ig29e09.y1 HR85 islet Homo sapiens cDNA 5', mRNA sequence.    58  9e-05  1
BM453948|BM453948.1 AGENCOURT_6402705 NIH_MGC_72 Homo sapiens cDNA clone IMAGE:5529027 5', mRNA sequence.    56  1e-04  2
BM609776|BM609776.1 17000687107051 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449692879 5', mRNA sequence.    50  2e-04  2
CA952663|CA952663.1 iq11e01.y1 HR85 islet Homo sapiens cDNA clone IMAGE:6226248 5' similar to SW:ZN22_HUMAN P17026 ZINC FINGER PROTEIN 22 ;, mRNA sequence.    52  2e-04  2
BM495267|BM495267.1 IpCGBr2_2_C12_21 Ictalurus punctatus Brain1 microsatellite enriched Ictalurus punctatus cDNA clone IpCGBr2_2_C12_21_21Aug00_098 5', mRNA sequence.    50  2e-04  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54PZ2) RecName: Full=Copper transport protein ATOX1 homolog;        135   3e-31
BC166972_1(BC166972|pid:none) Xenopus tropicalis ATX1 antioxidan...    63   4e-09
BT046295_1(BT046295|pid:none) Salmo salar clone ssal-evd-572-072...    62   5e-09
BT079279_1(BT079279|pid:none) Esox lucius clone eluc-evq-535-179...    62   5e-09
(Q9WUC4) RecName: Full=Copper transport protein ATOX1; AltName: ...    60   2e-08
CR456901_1(CR456901|pid:none) Homo sapiens full open reading fra...    60   2e-08
(O00244) RecName: Full=Copper transport protein ATOX1; AltName: ...    60   2e-08
(Q9TT99) RecName: Full=Copper transport protein ATOX1; AltName: ...    60   3e-08
AY674224_1(AY674224|pid:none) Ixodes pacificus clone IP_7_60_92_...    59   4e-08
(O08997) RecName: Full=Copper transport protein ATOX1; AltName: ...    58   9e-08

 psg: 0.81  gvh: 0.42  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VSA317 is nuc

>VSA317E.Seq
CGGACGCGTGGGCGGACGCGTGGGCAATAAAATGACTTATTCCTTTTTCGTTGATATGAC
ATGTGGTGGTTGCTCAAAAGCTGTAAATGCCATCTTATCTAAAATTGATGGTGTTTCAAA
TATTCAAATTGACCTTGAAAATAAAAAAGTCAGTTGTGAAAGTTCAAAAATGGGAGCAGA
TGAATTATTAAAGAATATTCAAAAAACTGGAAAGAAATGTTCAATTATTGCTTAAATTAG
TAATTGTCAATAATAATAATAATTTAAAATAATATAACATTACCTATATATACACACAAT
TTTTAATTAAATTCCAAGATAAAATGGAGTGTCATTGTTCTTGGGTTCAATGAAAAAAAA
AAAAAAAAACAAAAAAACAAAAAAACAAAAAACTATCAAAAATAAATCTGGTTCTCTTAG
AGATACTCGTTCTAATT