>VSA312 (VSA312Q) /CSM/VS/VSA3-A/VSA312Q.Seq.d/
CCCACGCGTCCGCCAAAAGCCGCTGGAGGTAAATCCAAACAAATTCAAGCATCCAAAGCT
GCCGCCAAAGGTAGTTCCGGTGGTGCCGGTAGAAAGAAATGGTCTAAAGGTAGATCAAGA
GAAAAGTTAAACAATGCTATTCTCTTCGATAAAGAAACCTACGCCAAACTCTTAAAAGAA
ATGCCAACTGCTAAAGTTATCACTACCGCTGTTGTTTCTGAAAGAATGAAGTGCAATGGT
TCATTAGCCCGTAGAGCCATCAAAGAATTATTATCAAAAGGTCTCATCAAACAAATCATC
AAAGGTCACGGTAACGGTGTTTACACTAAAGCTCAATAAATTGATAGATAAATAGATAAT
AAAAAAACATTTAAAAAAAAATCGAAAAAAAAAAAAAAAAAAAAAAA

PTRPPKAAGGKSKQIQASKAAAKGSSGGAGRKKWSKGRSREKLNNAILFDKETYAKLLKE
MPTAKVITTAVVSERMKCNGSLARRAIKELLSKGLIKQIIKGHGNGVYTKAQ*idr*idn
kktfkkkskkkkkkk

Frame A:
PTRPPKAAGGKSKQIQASKAAAKGSSGGAGRKKWSKGRSREKLNNAILFDKETYAKLLKE
MPTAKVITTAVVSERMKCNGSLARRAIKELLSKGLIKQIIKGHGNGVYTKAQ*idr*idn
kktfkkkskkkkkkk


Frame B:
prvrqkplevnpnkfkhpklppkvvpvvpvernglkvdqeks*tmlfssikkptpns*kk
cqllklslpllflke*samvh*pvepsknyyqkvssnksskvtvtvftlklnklidk*ii
kkhlkknrkkkkkkk


Frame C:
hasaksrwr*iqtnssiqscrqr*frwcr*kemv*r*ikrkvkqcyslr*rnlrqtlkrn
anc*syhyrccf*knevqwfisp*shqriiikrshqtnhqrsr*rclh*ssin**inr**
kni*kkiekkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA312 (VSA312Q) /CSM/VS/VSA3-A/VSA312Q.Seq.d/                        714   0.0
VSJ271 (VSJ271Q) /CSM/VS/VSJ2-C/VSJ271Q.Seq.d/                        690   0.0
VSI253 (VSI253Q) /CSM/VS/VSI2-C/VSI253Q.Seq.d/                        690   0.0
VSI171 (VSI171Q) /CSM/VS/VSI1-C/VSI171Q.Seq.d/                        690   0.0
VSG883 (VSG883Q) /CSM/VS/VSG8-D/VSG883Q.Seq.d/                        690   0.0
VSF804 (VSF804Q) /CSM/VS/VSF8-A/VSF804Q.Seq.d/                        690   0.0
VSD102 (VSD102Q) /CSM/VS/VSD1-A/VSD102Q.Seq.d/                        690   0.0
VSB201 (VSB201Q) /CSM/VS/VSB2-A/VSB201Q.Seq.d/                        690   0.0
VSA890 (VSA890Q) /CSM/VS/VSA8-D/VSA890Q.Seq.d/                        690   0.0
VSA128 (VSA128Q) /CSM/VS/VSA1-B/VSA128Q.Seq.d/                        690   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X69484|X69484.1 D.discoideum gene for ribosomal protein S31.     690  0.0  1
AL981827|AL981827.1 Danio rerio genomic clone DKEY-35H20, genomic survey sequence.    46  0.33  1
AW941124|AW941124.1 GM01233.3prime GM Drosophila Ovary Drosophila melanogaster cDNA clone GM01233 3, mRNA sequence.    40  0.49  2
CD479673|CD479673.1 eca01-18ms1-b06 Eca01 Eschscholzia californica cDNA clone eca01-18ms1-b06 5', mRNA sequence.    40  0.57  2
BM594030|BM594030.1 17000687444142 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449728440 5', mRNA sequence.    44  1.3  1
AZ704780|AZ704780.1 RPCI-23-238F22.TJ RPCI-23 Mus musculus genomic clone RPCI-23-238F22 , DNA sequence.    44  1.3  1
BM625877|BM625877.1 17000687493805 A.Gam.ad.cDNA1 Anopheles gambiae cDNA clone 19600449656051 5', mRNA sequence.    44  1.3  1
AC132966|AC132966.4 Rattus norvegicus clone CH230-210B24, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  1.3  1
BM606698|BM606698.1 17000687084185 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449696728 5', mRNA sequence.    44  1.3  1
AC120558|AC120558.4 Mus musculus clone RP24-494K12, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.    44  1.3  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF085675_1(EF085675|pid:none) Picea sitchensis clone WS02736_B19...    93   3e-18
AY769340_1(AY769340|pid:none) Bombyx mori ribosomal protein S25 ...    93   3e-18
EF207956_1(EF207956|pid:none) Heliconius melpomene ribosomal pro...    93   3e-18
DQ673409_1(DQ673409|pid:none) Diaphorina citri putative ribosoma...    92   4e-18
FM212939_1(FM212939|pid:none) Nilaparvata lugens mRNA for riboso...    90   2e-17
(P48588) RecName: Full=40S ribosomal protein S25;  &AE014297_129...    89   6e-17
AY232037_1(AY232037|pid:none) Drosophila yakuba clone yak-ad_RpS...    89   6e-17
AY231651_1(AY231651|pid:none) Drosophila yakuba clone yak-em_RpS...    89   6e-17
EZ000348_1(EZ000348|pid:none) TSA: Culex tarsalis Ctar-112 40S r...    86   3e-16
U03289_1(U03289|pid:none) Drosophila melanogaster Sevelin riboso...    86   3e-16

 psg: 0.55  gvh: 0.33  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.07
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial

>> prediction for VSA312 is nuc

>VSA312E.Seq
CCCACGCGTCCGCCAAAAGCCGCTGGAGGTAAATCCAAACAAATTCAAGCATCCAAAGCT
GCCGCCAAAGGTAGTTCCGGTGGTGCCGGTAGAAAGAAATGGTCTAAAGGTAGATCAAGA
GAAAAGTTAAACAATGCTATTCTCTTCGATAAAGAAACCTACGCCAAACTCTTAAAAGAA
ATGCCAACTGCTAAAGTTATCACTACCGCTGTTGTTTCTGAAAGAATGAAGTGCAATGGT
TCATTAGCCCGTAGAGCCATCAAAGAATTATTATCAAAAGGTCTCATCAAACAAATCATC
AAAGGTCACGGTAACGGTGTTTACACTAAAGCTCAATAAATTGATAGATAAATAGATAAT
AAAAAAACATTTAAAAAAAAATCGAAAAAAAAAAAAAAAAAAAAAAA