>VSA304 (VSA304Q) /CSM/VS/VSA3-A/VSA304Q.Seq.d/
XXXXXXXXXXAAATAATAATAATAATATTAGATCATTAAAAAAAAAAAAAAAAAAAAAAA
ATAGTTTCTTACGTTTAAAAAAAATTTTTTTTTTTATATATATATTTTTTTTTTTTTCTC
AAAAAATAAAATGATCACCAATAATAATAATACTTTAACAAAAAAAAAAAAAATAAAAAA
TAAAAAATAAAATGTAATA

---****y*iikkkkkkkk*FLTFKKNFFFYIYIFFFFSKNKMITNNNNTLTKKKKIKNK
K*nvi

Frame A:
---nnnnnirslkkkkkkknsflrlkkifffiyiffffsqkik*spiiiil*qkkkk*ki
knkm*


Frame B:
---iiiiildh*kkkkkkkivsyv*kkffflyiyfffflkk*ndhq***yfnkkkknkk*
kikcn


Frame C:
---****y*iikkkkkkkk*FLTFKKNFFFYIYIFFFFSKNKMITNNNNTLTKKKKIKNK
K*nvi

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA304 (VSA304Q) /CSM/VS/VSA3-A/VSA304Q.Seq.d/                         84   9e-16
VSI742 (VSI742Q) /CSM/VS/VSI7-B/VSI742Q.Seq.d/                         52   3e-06
VSH604 (VSH604Q) /CSM/VS/VSH6-A/VSH604Q.Seq.d/                         52   3e-06
VSF726 (VSF726Q) /CSM/VS/VSF7-B/VSF726Q.Seq.d/                         52   3e-06
VSF720 (VSF720Q) /CSM/VS/VSF7-A/VSF720Q.Seq.d/                         52   3e-06
VSF577 (VSF577Q) /CSM/VS/VSF5-D/VSF577Q.Seq.d/                         52   3e-06
VSF547 (VSF547Q) /CSM/VS/VSF5-B/VSF547Q.Seq.d/                         52   3e-06
VSF458 (VSF458Q) /CSM/VS/VSF4-C/VSF458Q.Seq.d/                         52   3e-06
VSE378 (VSE378Q) /CSM/VS/VSE3-D/VSE378Q.Seq.d/                         52   3e-06
VSD408 (VSD408Q) /CSM/VS/VSD4-A/VSD408Q.Seq.d/                         52   3e-06

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***.    84  8e-26  3
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    84  4e-25  3
BI814886|BI814886.1 PfESToaa07f05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    40  7e-04  2
BQ633598|BQ633598.1 PfESToab44b04.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    40  7e-04  2
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    42  7e-04  2
V00696|V00696.1 Yeast (S. cerevisiae) mitochondrial gene for cytochrome B extending  from map position 71.3 to 80.2. (Strain D273-10B.).    38  0.002  2
BH126692|BH126692.1 BARC-Satt522 Size-selected soybean genomic Glycine max genomic, DNA sequence.    40  0.002  2
L36899|L36899.1 Saccharomyces cerevisiae mitochondrion origin of replication (ori6) and oli1 gene, complete cds.    38  0.002  2
BQ596231|BQ596231.1 PfESToab31a06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:ARP_PLAFA P04931 ASPARAGINE-RICH PROTEIN ;, mRNA sequence.    40  0.002  2
AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    40  0.003  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 11,932,653

 psg: 0.97  gvh: 0.22  alm: 0.41  top: 0.60  tms: 0.00  mit: 0.45  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for VSA304 is nuc

>VSA304Z.Seq
----------AAATAATAATAATAATATTAGATCATTAAAAAAAAAAAAAAAAAAAAAAA
ATAGTTTCTTACGTTTAAAAAAAATTTTTTTTTTTATATATATATTTTTTTTTTTTTCTC
AAAAAATAAAATGATCACCAATAATAATAATACTTTAACAAAAAAAAAAAAAATAAAAAA
TAAAAAATAAAATGTAATA