VSA296
Library VS
(Link to library)
Clone ID VSA296
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06235-1
Original site URL
Representative seq. ID VSA296Z
(Link to Original site)
Representative DNA sequence
>VSA296 (VSA296Q) /CSM/VS/VSA2-D/VSA296Q.Seq.d/
XXXXXXXXXXATTCAAAAAGTATTAAAGTTGATACATTTGTATGTGCAGCAGGTGGTTGG
TCAGGTGGTAATGCATCAAGTGATGAATTTTTAAAATCAGTTAAAGGAATGATCGATATG
AATTTATATTCAGCATTTGCATCAGCACATATTGGAGCTAAACTTTTAAATCAAGGTGGT
TTATTCGTTTTAACAGGTGCATCAGCAGCATTGAATAGAACATCAGGTATGATTGCCTAT
GGTGCAACCAAAGCAGCAACTCATCACATTATTAAAGATTTAGCAAGTGAAAATGGTGGT
CTCCCAGCCGGTTCAACTTCATTAGGTATCTTACCAGTTACATTAGATACTCCAACCAAT
CGTAAATACATGTCTGATGCTAACTTTGATGATTGGACACCACTCTCTGAAGTCGCTGAA
AAATTATTTGAATGGTCAACAAACTCTGATTCAAGACCAACCAATGGTTCTTTAGTTAAA
TTTGAAACTAAAAGTAAAGTTACCACTTGGACAAATTTGTAAAAAAAAAAATAAAAAAAT
AAAAAATAATAATAATAATAATAGATTAAAA
sequence update 2000. 2.14
Translated Amino Acid sequence
---SKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGL
FVLTGASAALNRTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTNR
KYMSDANFDDWTPLSEVAEKLFEWSTNSDSRPTNGSLVKFETKSKVTTWTNL*kkk*knk
k******ik


Translated Amino Acid sequence (All Frames)
Frame A:
---fkky*s*yicmcsrwlvrw*cik**ifkis*rndryefifsicistyws*tfksrwf
irfnrcissie*nirydclwcnqssnsshy*rfsk*kwwspsrfnfiryltsyirysnqs
*ihv*c*l**ldttl*sr*kii*mvnkl*fktnqwffs*i*n*k*syhldkfvkkkikk*
kiiiiiid*


Frame B:
---SKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGL
FVLTGASAALNRTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTNR
KYMSDANFDDWTPLSEVAEKLFEWSTNSDSRPTNGSLVKFETKSKVTTWTNL*kkk*knk
k******ik


Frame C:
---qkvlklihlyvqqvvgqvvmhqvmnf*nqlke*si*iyiqhlhqhilelnf*ikvvy
sf*qvhqqh*iehqv*lpmvqpkqqlitllki*qvkmvvsqpvqlh*vsyqlh*ilqpiv
ntclmltlmighhslkslknylngqqtliqdqpmvl*lnlklkvklplgqickkknkkik
nnnnnnrlk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSA296 (VSA296Q) /CSM/VS/VSA2-D/VSA296Q.Seq.d/ 1011 0.0
VSB583 (VSB583Q) /CSM/VS/VSB5-D/VSB583Q.Seq.d/ 1003 0.0
VSJ419 (VSJ419Q) /CSM/VS/VSJ4-A/VSJ419Q.Seq.d/ 965 0.0
VSC260 (VSC260Q) /CSM/VS/VSC2-C/VSC260Q.Seq.d/ 678 0.0
VSI594 (VSI594Q) /CSM/VS/VSI5-D/VSI594Q.Seq.d/ 38 0.14
VSG875 (VSG875Q) /CSM/VS/VSG8-D/VSG875Q.Seq.d/ 36 0.56
VHN634 (VHN634Q) /CSM/VH/VHN6-B/VHN634Q.Seq.d/ 36 0.56
VFO892 (VFO892Q) /CSM/VF/VFO8-D/VFO892Q.Seq.d/ 36 0.56
VFO806 (VFO806Q) /CSM/VF/VFO8-A/VFO806Q.Seq.d/ 36 0.56
VFO675 (VFO675Q) /CSM/VF/VFO6-D/VFO675Q.Seq.d/ 36 0.56

own update 2003. 1. 8
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 995 0.0 1
AF312033|AF312033.1 Mus musculus acetylcholinesterase (Ache) and D5Ertd655e genes, complete cds; ASR2 (Asr2) gene, complete cds, alternatively spliced; TRIP6 (Trip6), CIP1 (Cip1), EPHB4 (Ephb4), ZAN (Zan), EPO (Epo), RPP20 (Rpp20), PERQ1 (Perq1), GNB2 (Gnb2), and BAF53B (Baf53b) genes, complete cds; and TFR2 (Tfr2) gene, partial cds. 50 0.48 2
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 38 1.5 2
AE003619|AE003619.3 Drosophila melanogaster chromosome 2L section 28 of 83 of the complete sequence. 38 1.7 3
BF778240|BF778240.1 NXSI_082_B02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA clone NXSI_082_B02 5', mRNA sequence. 38 1.7 2
BX000667|BX000667.1 Pinus pinaster clone PPNW10 similar to Putative translation factor. 38 1.8 2
BI202711|BI202711.1 NXPV_097_C04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_097_C04 5', mRNA sequence. 38 2.0 2
CC304157|CC304157.1 CH261-9O24_RM1.2 CH261 Gallus gallus genomic clone CH261-9O24, DNA sequence. 36 2.2 2
BE643728|BE643728.1 NXCI_043_H12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda cDNA clone NXCI_043_H12 5', mRNA sequence. 38 2.4 2
BG319073|BG319073.1 NXPV_023_D07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_023_D07 5', mRNA sequence. 38 2.4 2
dna update 2003. 8.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86A17) RecName: Full=Dihydropteridine reductase; EC=1... 310 2e-83
AF177163_1(AF177163|pid:none) Physarum polycephalum dihydropteri... 161 1e-38
AK340090_1(AK340090|pid:none) Acyrthosiphon pisum ACYPI006909 mR... 147 2e-34
BC115316_1(BC115316|pid:none) Danio rerio quinoid dihydropteridi... 136 5e-31
T24395(T24395) dihydropteridine reductase (EC 1.6.99.7) - Caenor... 133 3e-30
BC094271_1(BC094271|pid:none) Xenopus laevis hypothetical protei... 131 1e-29
AJ720032_1(AJ720032|pid:none) Gallus gallus mRNA for hypothetica... 129 6e-29
AE014296_1693(AE014296|pid:none) Drosophila melanogaster chromos... 126 5e-28
(P11348) RecName: Full=Dihydropteridine reductase; EC=1... 125 6e-28
BC088878_1(BC088878|pid:none) Xenopus tropicalis quinoid dihydro... 125 6e-28
protein update 2009. 7.27
PSORT

psg: 0.91 gvh: 0.63 alm: 0.40 top: 0.33 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: extracellular, including cell wall
28.0 %: nuclear
24.0 %: cytoplasmic
8.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VSA296 is exc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSA296Z
3' end seq.
>VSA296Z.Seq
----------ATTCAAAAAGTATTAAAGTTGATACATTTGTATGTGCAGCAGGTGGTTGG
TCAGGTGGTAATGCATCAAGTGATGAATTTTTAAAATCAGTTAAAGGAATGATCGATATG
AATTTATATTCAGCATTTGCATCAGCACATATTGGAGCTAAACTTTTAAATCAAGGTGGT
TTATTCGTTTTAACAGGTGCATCAGCAGCATTGAATAGAACATCAGGTATGATTGCCTAT
GGTGCAACCAAAGCAGCAACTCATCACATTATTAAAGATTTAGCAAGTGAAAATGGTGGT
CTCCCAGCCGGTTCAACTTCATTAGGTATCTTACCAGTTACATTAGATACTCCAACCAAT
CGTAAATACATGTCTGATGCTAACTTTGATGATTGGACACCACTCTCTGAAGTCGCTGAA
AAATTATTTGAATGGTCAACAAACTCTGATTCAAGACCAACCAATGGTTCTTTAGTTAAA
TTTGAAACTAAAAGTAAAGTTACCACTTGGACAAATTTGTAAAAAAAAAAATAAAAAAAT
AAAAAATAATAATAATAATAATAGATTAAAA
Length of 3' end seq. 561
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -