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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA126
Library AH
(Link to library)
Clone ID AHA126
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13994-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AHA126 (AHA126Q) /CSM/AH/AHA1-B/AHA126Q.Seq.d/
GAAAAATTATTCAAAAATCCAACAATTATTGTTTATACAAAAATAAAACTTTAGCAATAA
CAATAATAACATATACATATACAAATAAAATAAAATGAGTGACAATTTAAAATCATACCA
AGATAATCATATTGAAAATGAAGATGAAGAAATTTATGAAAGATCAAATGGAAAAGGAAA
GGAATTAGTTGATTTTGGAAAGAAGAGAGAACCATTAATCCATAACCATGAAGTTTTAAA
TACAATGCAATCATCAGTAAAGACATTATTAAGTAGTTTAGGTGAAGATCCGGATAGAGA
AGGTTTATTAAAGACACCATTAAGAATGTCAAAGGCTTTATTATTTTTTACACAAGGTTA
TGAGCAATCTGTTGATGAAGTTATTGGTGAAGCAATTTTTAATGAAAATCATCATGAAAT
GGTTGTTGTCAGAGATATTGATATATTTTCATTATGTGAACATCATATGGTGCCATTCCA
TGGTAAATGCCATATTGGTTATATTCCAGATCAAAAAGTTTTAGGTTTAAGTAAATTAGC
AAGAGTTGCTGAAATTTTTGCCAGAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
knyskiqqllfiqk*nfsnnnnniyiyk*NKMSDNLKSYQDNHIENEDEEIYERSNGKGK
ELVDFGKKREPLIHNHEVLNTMQSSVKTLLSSLGEDPDREGLLKTPLRMSKALLFFTQGY
EQSVDEVIGEAIFNENHHEMVVVRDIDIFSLCEHHMVPFHGKCHIGYIPDQKVLGLSKLA
RVAEIFA---
Translated Amino Acid sequence (All Frames) 
Frame A:
eklfknptiivytkikl*q*q**hihiqik*ne*qfkiipr*sy*k*r*rnl*kikwkrk
gis*fwkeertinp*p*sfkynaiiskdiik*fr*rsg*rrfikdtiknvkgfiifytrl
*aic**syw*snf**kss*ngccqry*yifim*tsygaipw*mpywlysrsksfrfk*is
ksc*nfcq---


Frame B:
knyskiqqllfiqk*nfsnnnnniyiyk*NKMSDNLKSYQDNHIENEDEEIYERSNGKGK
ELVDFGKKREPLIHNHEVLNTMQSSVKTLLSSLGEDPDREGLLKTPLRMSKALLFFTQGY
EQSVDEVIGEAIFNENHHEMVVVRDIDIFSLCEHHMVPFHGKCHIGYIPDQKVLGLSKLA
RVAEIFA---


Frame C:
kiiqksnnyclyknktlaitiitytytnkik*vti*nhtkiiilkmkmkkfmkdqmeker
n*lilerrenh*sitmkf*iqcnhq*rhy*vv*vkiriekvy*rhh*ecqrlyyflhkvm
snllmkllvkqflmkiimkwllseiliyfhyvniiwchsmvnailvifqikkf*v*vn*q
ellkflp---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHA126 (AHA126Q) /CSM/AH/AHA1-B/AHA126Q.Seq.d/                        930   0.0
VSI845 (VSI845Q) /CSM/VS/VSI8-B/VSI845Q.Seq.d/                        914   0.0
VSE818 (VSE818Q) /CSM/VS/VSE8-A/VSE818Q.Seq.d/                        896   0.0
SSD175 (SSD175Q) /CSM/SS/SSD1-D/SSD175Q.Seq.d/                        856   0.0
VSH188 (VSH188Q) /CSM/VS/VSH1-D/VSH188Q.Seq.d/                        854   0.0
VSJ860 (VSJ860Q) /CSM/VS/VSJ8-C/VSJ860Q.Seq.d/                        817   0.0
VSH712 (VSH712Q) /CSM/VS/VSH7-A/VSH712Q.Seq.d/                        694   0.0
VSC506 (VSC506Q) /CSM/VS/VSC5-A/VSC506Q.Seq.d/                        620   e-177
VSA692 (VSA692Q) /CSM/VS/VSA6-D/VSA692Q.Seq.d/                        567   e-161
VSF372 (VSF372Q) /CSM/VS/VSF3-C/VSF372Q.Seq.d/                        454   e-127
own update 2002.10.30
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Z49706|Z49706.1 D.discoideum mRNA for GTP cyclohydrolase I.       922   0.0    1
AX489467|AX489467.1 Sequence 6767 from Patent WO02053728.          60   3e-16  2
BE223930|BE223930.1 kp85g09.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:GCH1_OSTOS O61573 GTP CYCLOHYDROLASE I ;, mRNA sequence.    58   2e-08  2
BQ098020|BQ098020.1 ph12e03.y2 Ostertagia ostertagi L3 pAMP1 v1 Ostertagia ostertagi cDNA 5' similar to SW:GCH1_OSTOS O61573 GTP CYCLOHYDROLASE I ;, mRNA sequence.    64   2e-06  1
BQ099359|BQ099359.1 ph29e06.y2 Ostertagia ostertagi L3 pAMP1 v1 Ostertagia ostertagi cDNA 5' similar to SW:GCH1_OSTOS O61573 GTP CYCLOHYDROLASE I ;contains Alu repetitive element;, mRNA sequence.    64   2e-06  1
BQ098239|BQ098239.1 ph15f06.y2 Ostertagia ostertagi L3 pAMP1 v1 Ostertagia ostertagi cDNA 5' similar to SW:GCH1_OSTOS O61573 GTP CYCLOHYDROLASE I ;contains Alu repetitive element;, mRNA sequence.    64   2e-06  1
BQ098640|BQ098640.1 ph20c11.y2 Ostertagia ostertagi L3 pAMP1 v1 Ostertagia ostertagi cDNA 5' similar to SW:GCH1_OSTOS O61573 GTP CYCLOHYDROLASE I ;, mRNA sequence.    64   2e-06  1
BQ099569|BQ099569.1 ph32a09.y2 Ostertagia ostertagi L3 pAMP1 v1 Ostertagia ostertagi cDNA 5' similar to SW:GCH1_OSTOS O61573 GTP CYCLOHYDROLASE I ;, mRNA sequence.    64   2e-06  1
BQ099462|BQ099462.1 ph30g02.y2 Ostertagia ostertagi L3 pAMP1 v1 Ostertagia ostertagi cDNA 5' similar to SW:GCH1_OSTOS O61573 GTP CYCLOHYDROLASE I ;, mRNA sequence.    64   2e-06  1
BE581003|BE581003.1 kp84a09.y2 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to WP:F32G8.6 CE05795 PROBABLE GTP CYCLOHYDROLASE I ;, mRNA sequence.    62   9e-06  1
dna update 2004. 2.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q94465) RecName: Full=GTP cyclohydrolase 1;          EC=3.5.4.1...   320   2e-86
AF318067_1(AF318067|pid:none) Physarum polycephalum GTP cyclohyd...   178   8e-44
AF177164_1(AF177164|pid:none) Physarum polycephalum GTP cyclohyd...   178   8e-44
AM920436_1630(AM920436|pid:none) Penicillium chrysogenum Wiscons...   157   2e-37
CP000951_2403(CP000951|pid:none) Synechococcus sp. PCC 7002, com...   155   5e-37
CU633446_54(CU633446|pid:none) Podospora anserina genomic DNA ch...   155   7e-37
CR382127_328(CR382127|pid:none) Yarrowia lipolytica strain CLIB1...   155   7e-37
(A4SF37) RecName: Full=GTP cyclohydrolase 1;          EC=3.5.4.1...   152   8e-36
(P51599) RecName: Full=GTP cyclohydrolase 1;          EC=3.5.4.1...   152   8e-36
A49302(A49302) GTP cyclohydrolase I (EC 3.5.4.16), exon 1a-conta...   151   1e-35
protein update 2009. 4.26
PSORT 

 psg: 0.48  gvh: 0.24  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for AHA126 is nuc
5' end seq. ID AHA126F
5' end seq. 
>AHA126F.Seq
GAAAAATTATTCAAAAATCCAACAATTATTGTTTATACAAAAATAAAACTTTAGCAATAA
CAATAATAACATATACATATACAAATAAAATAAAATGAGTGACAATTTAAAATCATACCA
AGATAATCATATTGAAAATGAAGATGAAGAAATTTATGAAAGATCAAATGGAAAAGGAAA
GGAATTAGTTGATTTTGGAAAGAAGAGAGAACCATTAATCCATAACCATGAAGTTTTAAA
TACAATGCAATCATCAGTAAAGACATTATTAAGTAGTTTAGGTGAAGATCCGGATAGAGA
AGGTTTATTAAAGACACCATTAAGAATGTCAAAGGCTTTATTATTTTTTACACAAGGTTA
TGAGCAATCTGTTGATGAAGTTATTGGTGAAGCAATTTTTAATGAAAATCATCATGAAAT
GGTTGTTGTCAGAGATATTGATATATTTTCATTATGTGAACATCATATGGTGCCATTCCA
TGGTAAATGCCATATTGGTTATATTCCAGATCAAAAAGTTTTAGGTTTAAGTAAATTAGC
AAGAGTTGCTGAAATTTTTGCCAGANNNNNNNNNN
Length of 5' end seq. 575
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -