NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSA268
Library VS
(Link to library)
Clone ID VSA268
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16406-1
Original site URL
Representative seq. ID VSA268E
(Link to Original site)
Representative DNA sequence 
>VSA268 (VSA268Q) /CSM/VS/VSA2-C/VSA268Q.Seq.d/
CCCACGCGTCCGGCTTAAATGACAAATTTAAGGTTTAAGGGGAAAAGATAGGAGAAATAG
AAGAGAGTTGTAAGAGAAAAATGTTTATAACGGATCTCTATGCAAATAAGAAAAAGGACG
TACGAATGAACGAAAGGTTATAGGGAAAATATAAAAAAGAGTTAGCAATAGCAATTGAAG
ATCTATAAATATCCGAAGGGAGACC
sequence update 2000. 2.29
Translated Amino Acid sequence 
hasglndkfkv*GEKIGEIEESCKRKMFITDLYANKKKDVRMNERL*gkykkelaiaied
l*isegr
Translated Amino Acid sequence (All Frames) 
Frame A:
ptrpa*mtnlrfkgkr*ek*krvvrekcl*rismqirkrtye*tkgyrenikks*q*qlk
iykypkgd


Frame B:
prvrlk*qi*glrgkdrrnrrel*eknvyngslck*ekgrtnerkvigki*krvsnsn*r
sinirret


Frame C:
hasglndkfkv*GEKIGEIEESCKRKMFITDLYANKKKDVRMNERL*gkykkelaiaied
l*isegr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA268 (VSA268Q) /CSM/VS/VSA2-C/VSA268Q.Seq.d/                        406   e-113
VSG190 (VSG190Q) /CSM/VS/VSG1-D/VSG190Q.Seq.d/                        377   e-104
VSK340 (VSK340Q) /CSM/VS/VSK3-B/VSK340Q.Seq.d/                        375   e-103
VSB752 (VSB752Q) /CSM/VS/VSB7-C/VSB752Q.Seq.d/                        375   e-103
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/               375   e-103
VSD842 (VSD842Q) /CSM/VS/VSD8-B/VSD842Q.Seq.d/                        359   1e-98
SLG289 (SLG289Q) /CSM/SL/SLG2-D/SLG289Q.Seq.d/                        272   2e-72
SHC457 (SHC457Q) /CSM/SH/SHC4-C/SHC457Q.Seq.d/                        266   1e-70
SHH465 (SHH465Q) /CSM/SH/SHH4-C/SHH465Q.Seq.d/                        252   2e-66
VSF886 (VSF886Q) /CSM/VS/VSF8-D/VSF886Q.Seq.d/                        248   3e-65
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16466|D16466.1 Dictyostelium discoideum mitochondrial DNA.      375  e-100  1
AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence.   375  e-100  1
AJ512794|AJ512794.1 Dictyostelium discoideum mRNA for LIS1 protein.   147  6e-32  1
AJ512336|AJ512336.1 Dictyostelium discoideum mRNA for LIS1 protein.   147  6e-32  1
AQ678528|AQ678528.1 HS_2130_B2_G01_T7C CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=2130 Col=2 Row=N, genomic survey sequence.    48  0.040  1
BF335783|BF335783.1 RC4-CT0477-140800-011-b12 CT0477 Homo sapiens cDNA, mRNA sequence.    46  0.16  1
AC096916|AC096916.2 Homo sapiens chromosome 3 clone RP11-92I24, complete sequence.    36  0.17  4
AL138958|AL138958.18 Human DNA sequence from clone RP11-206I15 on chromosome 13.    48  0.48  2
AC128883|AC128883.2 Rattus norvegicus clone CH230-46L11, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44  0.62  1
AC095953|AC095953.6 Rattus norvegicus clone CH230-11A13, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44  0.62  1
dna update 2003. 9.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN357533_3(FN357533|pid:none) Schistosoma mansoni genome sequenc...    32   5.3
protein update 2009. 7.22
PSORT 

 psg: 0.75  gvh: 0.26  alm: 0.64  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.25  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VSA268 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSA268E
Full length Seq. 
>VSA268E.Seq
CCCACGCGTCCGGCTTAAATGACAAATTTAAGGTTTAAGGGGAAAAGATAGGAGAAATAG
AAGAGAGTTGTAAGAGAAAAATGTTTATAACGGATCTCTATGCAAATAAGAAAAAGGACG
TACGAATGAACGAAAGGTTATAGGGAAAATATAAAAAAGAGTTAGCAATAGCAATTGAAG
ATCTATAAATATCCGAAGGGAGACC
Length of full length seq. 205