VSA260
Library VS
(Link to library)
Clone ID VSA260
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15480-1
Original site URL
Representative seq. ID VSA260E
(Link to Original site)
Representative DNA sequence
>VSA260 (VSA260Q) /CSM/VS/VSA2-C/VSA260Q.Seq.d/
ACTTGATAAATAAAACAATGGGTGTTGAAATCACAATTATTAAAGAAGGTAAAGGTAATA
TTCCACCAGTTGGTTCAAATGTAACTGTACATTATGTAGGTACTTTAACTAATGGTACCG
TTTTTGATTCATCAAGCAAGAGAGGCCAACCATTTAATTTTAAACTTGGTGCTGGTCAAG
TCATCAAAGGTTGGGATGAAGGTGTTGCTAAAATGAAAGTTGGTGAAACCTCCAAATTAA
CCATTAGCCCAGATTTTGGATATGGTGCTAGAGGTGCTGGTGGTGTTATTCCACCAAATG
CAACACTTGTCTTTGAAGTAGAATTAATCACATTTAAATAAAGAGATGAAGAATTATTCA
AATAAATTTAAGGGAATTTTAATATTGGTTAACAAATATATTTTCTCGATTATGATTTTT
TAAATCAAAAAAA
sequence update 2000. 2.29
Translated Amino Acid sequence
LINKTMGVEITIIKEGKGNIPPVGSNVTVHYVGTLTNGTVFDSSSKRGQPFNFKLGAGQV
IKGWDEGVAKMKVGETSKLTISPDFGYGARGAGGVIPPNATLVFEVELITFK*rdeelfk
*i*gnfnig*qiyfldydflnqk


Translated Amino Acid sequence (All Frames)
Frame A:
t**ikqwvlksqllkkvkvifhqlvqm*lyim*vl*lmvpflihqareanhlilnlvlvk
sskvgmkvllk*klvkppn*plaqildmvlevlvvlfhqmqhlslk*n*shlnkemknys
nkfkgililvnkyifsimif*ikk


Frame B:
ldk*nngc*nhny*rr*r*ystswfkcnctlcryfn*wyrf*fikqerpti*f*twcwss
hqrlg*rcc*nesw*nlqinh*prfwiwc*rcwwcystkcntcl*srinhi*ikr*riiq
inlref*ywltnifsrl*ffkskk


Frame C:
LINKTMGVEITIIKEGKGNIPPVGSNVTVHYVGTLTNGTVFDSSSKRGQPFNFKLGAGQV
IKGWDEGVAKMKVGETSKLTISPDFGYGARGAGGVIPPNATLVFEVELITFK*rdeelfk
*i*gnfnig*qiyfldydflnqk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSA260 (VSA260Q) /CSM/VS/VSA2-C/VSA260Q.Seq.d/ 844 0.0
VFE394 (VFE394Q) /CSM/VF/VFE3-D/VFE394Q.Seq.d/ 829 0.0
VSF517 (VSF517Q) /CSM/VS/VSF5-A/VSF517Q.Seq.d/ 807 0.0
VSF243 (VSF243Q) /CSM/VS/VSF2-B/VSF243Q.Seq.d/ 805 0.0
VSJ835 (VSJ835Q) /CSM/VS/VSJ8-B/VSJ835Q.Seq.d/ 801 0.0
VSG667 (VSG667Q) /CSM/VS/VSG6-C/VSG667Q.Seq.d/ 785 0.0
VSD731 (VSD731Q) /CSM/VS/VSD7-B/VSD731Q.Seq.d/ 777 0.0
FC-BS02 (FC-BS02Q) /CSM/FC/FC-BS/FC-BS02Q.Seq.d/ 775 0.0
VHD376 (VHD376Q) /CSM/VH/VHD3-D/VHD376Q.Seq.d/ 765 0.0
VSE335 (VSE335Q) /CSM/VS/VSE3-B/VSE335Q.Seq.d/ 367 e-101

own update 2003. 1. 8
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 250 0.0 10
CB909775|CB909775.1 USDA-FP_101518 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-21_G11 5', mRNA sequence. 54 3e-09 3
CD451091|CD451091.1 USDA-FP_103145 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-42_B01 5', mRNA sequence. 54 3e-09 3
AW773430|AW773430.1 rp08d05.y1 Kloek Brook Zeldia punctata SL1 Zeldia punctata cDNA 5' similar to WP:Y18D10A.19C CE21417 ;, mRNA sequence. 64 4e-09 2
CD450786|CD450786.1 USDA-FP_102764 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-38_B02 5', mRNA sequence. 54 6e-09 3
CD451804|CD451804.1 USDA-FP_104110 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-51_A11 5', mRNA sequence. 54 6e-09 3
CB814948|CB814948.1 USDA-FP_100421 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-06_E11 5', mRNA sequence. 54 7e-09 3
BP186674|BP186674.1 Dugesia japonica cDNA, clone: 01257_HH, expressed in the head. 38 3e-08 4
CB909815|CB909815.1 USDA-FP_101558 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-22_C10 5', mRNA sequence. 54 2e-07 2
CB832731|CB832731.1 USDA-FP_100526 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-07_G04 5', mRNA sequence. 54 3e-07 2
dna update 2003. 9.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000806_3024(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 145 4e-34
AJ634777_1(AJ634777|pid:none) Suberites ficus mRNA for putative ... 141 8e-33
DQ443423_1(DQ443423|pid:none) Bombyx mori FK506-binding protein ... 138 5e-32
AK340022_1(AK340022|pid:none) Acyrthosiphon pisum ACYPI009532 mR... 137 9e-32
CP000828_1721(CP000828|pid:none) Acaryochloris marina MBIC11017,... 137 1e-31
AP009552_5437(AP009552|pid:none) Microcystis aeruginosa NIES-843... 137 2e-31
AM746676_3800(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 136 2e-31
AJ278329_1(AJ278329|pid:none) Suberites domuncula mRNA for putat... 136 3e-31
CP000113_6680(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 135 4e-31
CP001328_611(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 134 8e-31
protein update 2009. 7.22
PSORT

psg: 0.61 gvh: 0.41 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
24.0 %: nuclear
20.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for VSA260 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSA260E
Full length Seq.
>VSA260E.Seq
ACTTGATAAATAAAACAATGGGTGTTGAAATCACAATTATTAAAGAAGGTAAAGGTAATA
TTCCACCAGTTGGTTCAAATGTAACTGTACATTATGTAGGTACTTTAACTAATGGTACCG
TTTTTGATTCATCAAGCAAGAGAGGCCAACCATTTAATTTTAAACTTGGTGCTGGTCAAG
TCATCAAAGGTTGGGATGAAGGTGTTGCTAAAATGAAAGTTGGTGAAACCTCCAAATTAA
CCATTAGCCCAGATTTTGGATATGGTGCTAGAGGTGCTGGTGGTGTTATTCCACCAAATG
CAACACTTGTCTTTGAAGTAGAATTAATCACATTTAAATAAAGAGATGAAGAATTATTCA
AATAAATTTAAGGGAATTTTAATATTGGTTAACAAATATATTTTCTCGATTATGATTTTT
TAAATCAAAAAAA
Length of full length seq. 433