>VSA233 (VSA233Q) /CSM/VS/VSA2-B/VSA233Q.Seq.d/
XXXXXXXXXXACTTATGGTGAATTACCAGAAACCGCTAGAATTAATGAAACTGATGCATT
TGATGATGTTGAAGATATTCCATTCGAATTCGTTGCTGAAGATGATATCGATATTGATAC
TCTATAAACAAAGACATTATTTATATATAGAAATATTAAACAGTATTTAATGCTGTAGTA
TAATAGTAACAGAGCAAAATTATCCCCCCC

---LMVNYQKPLELMKLMHLMMLKIFHSNSLLKMISILILYKQRHYLYIEILNSI*ccsi
ivteqnypp

Frame A:
---LMVNYQKPLELMKLMHLMMLKIFHSNSLLKMISILILYKQRHYLYIEILNSI*ccsi
ivteqnypp


Frame B:
---lw*itrnr*n**n*ci**c*rysirirc*r*yry*ysinkdiiyi*ky*tvfnavv*
**qskiipp


Frame C:
---ygelpetarinetdafddvedipfefvaeddididtl*tktlfiyrnikqylml*yn
snraklsp

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA233 (VSA233Q) /CSM/VS/VSA2-B/VSA233Q.Seq.d/                        383   e-106
VSF521 (VSF521Q) /CSM/VS/VSF5-A/VSF521Q.Seq.d/                        375   e-103
VHD658 (VHD658Q) /CSM/VH/VHD6-C/VHD658Q.Seq.d/                        375   e-103
SSK711 (SSK711Q) /CSM/SS/SSK7-A/SSK711Q.Seq.d/                        375   e-103
SSF521 (SSF521Q) /CSM/SS/SSF5-A/SSF521Q.Seq.d/                        375   e-103
FC-AJ05 (FC-AJ05Q) /CSM/FC/FC-AJ/FC-AJ05Q.Seq.d/                      375   e-103
AHL228 (AHL228Q) /CSM/AH/AHL2-B/AHL228Q.Seq.d/                        347   4e-95
SSK248 (SSK248Q) /CSM/SS/SSK2-B/SSK248Q.Seq.d/                        323   6e-88
VSC777 (VSC777Q) /CSM/VS/VSC7-D/VSC777Q.Seq.d/                        297   3e-80
SSL769 (SSL769Q) /CSM/SS/SSL7-C/SSL769Q.Seq.d/                        281   2e-75

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AZ522056|AZ522056.1 201PbF05 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    52  0.003  1
BF294231|BF294231.1 001PbG02 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    52  0.003  1
BZ980141|BZ980141.1 PUDEV25TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa171E02, DNA sequence.    46  0.16  1
AC102384|AC102384.8 Mus musculus, clone RP24-446I4, complete sequence.    36  0.49  4
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          42  2.5  1
AC105560|AC105560.4 Rattus norvegicus clone CH230-229A2, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42  2.5  1
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    42  2.5  1
BX511148|BX511148.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-174N20.    42  2.5  1
AQ008255|AQ008255.1 CpG0474A CpIOWAgDNA1 Cryptosporidium parvum genomic, genomic survey sequence.    42  2.5  1
BH597292|BH597292.1 BOGLZ52TF BOGL Brassica oleracea genomic clone BOGLZ52, DNA sequence.    42  2.5  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382138_287(CR382138|pid:none) Debaryomyces hansenii strain CBS...    40   0.025
FN392320_791(FN392320|pid:none) Pichia pastoris GS115 chromosome...    39   0.043
AM910991_409(AM910991|pid:none) Plasmodium knowlesi strain H chr...    39   0.043
FM992689_967(FM992689|pid:none) Candida dubliniensis CD36 chromo...    38   0.12
BT049466_1(BT049466|pid:none) Salmo salar clone ssal-evd-532-334...    37   0.28
BT047385_1(BT047385|pid:none) Salmo salar clone ssal-evd-517-113...    37   0.28
BT050065_1(BT050065|pid:none) Salmo salar clone ssal-evd-558-268...    37   0.28
BT046728_1(BT046728|pid:none) Salmo salar clone ssal-evd-566-043...    37   0.28
BT046786_1(BT046786|pid:none) Salmo salar clone ssal-evf-567-357...    37   0.28
BT049173_1(BT049173|pid:none) Salmo salar clone ssal-eve-526-175...    37   0.28

 psg: 0.82  gvh: 0.45  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VSA233 is cyt

>VSA233Z.Seq
----------ACTTATGGTGAATTACCAGAAACCGCTAGAATTAATGAAACTGATGCATT
TGATGATGTTGAAGATATTCCATTCGAATTCGTTGCTGAAGATGATATCGATATTGATAC
TCTATAAACAAAGACATTATTTATATATAGAAATATTAAACAGTATTTAATGCTGTAGTA
TAATAGTAACAGAGCAAAATTATCCCCCCC