VSA228
Library VS
(Link to library)
Clone ID VSA228
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06228-1
Original site URL
Representative seq. ID VSA228Z
(Link to Original site)
Representative DNA sequence
>VSA228 (VSA228Q) /CSM/VS/VSA2-B/VSA228Q.Seq.d/
XXXXXXXXXXAAAAGCTAAACCATTAGCTGATAGCAAACTTACTCTTACCATTTTGGATC
TTATTCAACAATCAAACAATTTAGGCCAATTAAAGAAAGGTGCTAACGAATGTACCAAAG
CCGTTTCACGTAGTACTGCTGAATTTGTTGTTTTAGCCGCTGATGCTGAACCATTAGAAA
TTTTATTACACATTCCATTATTATGTGAAGATAAGAATATTCCATACGTTTTCGTTTCAA
GCAAATCCGAACTCGGTAGAGCTTGTGATGTTTCAAGACCAGTTGTTGCTTGTGCTGTTA
CTGTCGATGATAAGAGTCAATTGAAATCTCAAATCACTAACGTTAAAGATTCATTAGACA
GATTATGGATCGTTTAAATTCGATTCATTTCATGTATTTTTTTTATAATACAAATGTGTA
CATATATACATCAAAATTATCTAAATTTTAATTTTTTTTTTTTTTTAAAAAAAAAAAAAA
AAAAAAAAATAGATAATAATTTTTTTGTATTATTTAAATAATATCAGCTAAAATTAGTTT
ATTTCAACCACCCTTTTTTTTGAAATGGATTTTTTTAAAATAAAATTAAACTTTAA
sequence update 2000. 2.14
Translated Amino Acid sequence
---KAKPLADSKLTLTILDLIQQSNNLGQLKKGANECTKAVSRSTAEFVVLAADAEPLEI
LLHIPLLCEDKNIPYVFVSSKSELGRACDVSRPVVACAVTVDDKSQLKSQITNVKDSLDR
LWIV*irfisciffiiqmctyihqnylnfnfffflkkkkkkkidnnffvlfk*yqlklvy
fnhpff*ngff*nkikl*


Translated Amino Acid sequence (All Frames)
Frame A:
---KAKPLADSKLTLTILDLIQQSNNLGQLKKGANECTKAVSRSTAEFVVLAADAEPLEI
LLHIPLLCEDKNIPYVFVSSKSELGRACDVSRPVVACAVTVDDKSQLKSQITNVKDSLDR
LWIV*irfisciffiiqmctyihqnylnfnfffflkkkkkkkidnnffvlfk*yqlklvy
fnhpff*ngff*nkikl*


Frame B:
---klnh*lianlllpfwilfnnqti*an*rkvltnvpkpfhvvllnllf*plmlnh*kf
yytfhyyvkirifhtfsfqanpnsvelvmfqdqlllvlllsmirvn*nlksltlkih*td
ygsfkfdsfhvffl*ykcvhiyikii*iliffff*kkkkkkk*iiiflyylnnis*n*fi
sttlffemdffkiklnf


Frame C:
---s*tis**qtysyhfgsystikqfrpikerc*rmyqsrft*yc*iccfsr*c*tirnf
ithsiim*r*eysirfrfkqirtr*sl*cfktscclccycr**esieisnh*r*rfirqi
mdrlnsihfmyffyntnvyiytsklskf*fffffkkkkkkknr**ffcii*iisakislf
qppfflkwiflk*n*tl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSA228 (VSA228Q) /CSM/VS/VSA2-B/VSA228Q.Seq.d/ 827 0.0
VSJ453 (VSJ453Q) /CSM/VS/VSJ4-C/VSJ453Q.Seq.d/ 813 0.0
VSC366 (VSC366Q) /CSM/VS/VSC3-C/VSC366Q.Seq.d/ 785 0.0
VSD167 (VSD167Q) /CSM/VS/VSD1-C/VSD167Q.Seq.d/ 224 1e-57
VSK270 (VSK270Q) /CSM/VS/VSK2-C/VSK270Q.Seq.d/ 94 3e-18
VSF441 (VSF441Q) /CSM/VS/VSF4-B/VSF441Q.Seq.d/ 34 2.3
VFN593 (VFN593Q) /CSM/VF/VFN5-D/VFN593Q.Seq.d/ 34 2.3
VFA337 (VFA337Q) /CSM/VF/VFA3-B/VFA337Q.Seq.d/ 34 2.3
SSM377 (SSM377Q) /CSM/SS/SSM3-D/SSM377Q.Seq.d/ 34 2.3
SSH877 (SSH877Q) /CSM/SS/SSH8-D/SSH877Q.Seq.d/ 34 2.3

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL402293|AL402293.1 T3 end of clone AT0AA001A10 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii. 62 9e-16 3
AL402477|AL402477.1 T3 end of clone AT0AA002C09 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii. 66 1e-12 2
AL404331|AL404331.1 T3 end of clone AT0AA014F06 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii. 66 1e-12 2
AL402785|AL402785.1 T3 end of clone AT0AA004F05 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii. 66 2e-12 2
AL404713|AL404713.1 T3 end of clone XAT0AA002A02 of library XAT0AA from strain CBS 4311 of Saccharomyces servazzii. 66 2e-12 2
CB890904|CB890904.1 taa55f09.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:NHPX_HUMAN P55769 NHP2/RS6 FAMILY PROTEIN YEL026W HOMOLOG ;, mRNA sequence. 68 8e-10 2
AL428603|AL428603.1 clone BA0AB026G04 of library BA0AB from strain CLIB 210 of Kluyveromyces lactis. 48 2e-09 3
AL426239|AL426239.1 clone BA0AB011F04 of library BA0AB from strain CLIB 210 of Kluyveromyces lactis. 48 2e-09 3
BZ295931|BZ295931.1 CG1763.f11 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG1763, DNA sequence. 44 4e-09 3
AL396162|AL396162.1 T7 end of clone AR0AA028F01 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 44 4e-08 3
dna update 2003. 8.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54ST0) RecName: Full=NHP2-like protein 1 homolog; 206 5e-52
AF361618_1(AF361618|pid:none) Arabidopsis thaliana AT4g12600/T1P... 140 2e-32
BT081700_1(BT081700|pid:none) Rana catesbeiana clone rcat-evr-53... 140 2e-32
CP001323_928(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 139 6e-32
AY086674_1(AY086674|pid:none) Arabidopsis thaliana clone 2673 mR... 139 6e-32
EF082562_1(EF082562|pid:none) Picea sitchensis clone WS0297_E17 ... 139 6e-32
AY087261_1(AY087261|pid:none) Arabidopsis thaliana clone 33381 m... 138 1e-31
Z83840_6(Z83840|pid:none) Human DNA sequence from clone CTA-216E... 136 4e-31
(P55769) RecName: Full=NHP2-like protein 1; AltName: Full=High m... 136 4e-31
AB170841_1(AB170841|pid:none) Macaca fascicularis brain cDNA clo... 136 4e-31
protein update 2009. 7.22
PSORT

psg: 0.83 gvh: 0.52 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VSA228 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSA228Z
3' end seq.
>VSA228Z.Seq
----------AAAAGCTAAACCATTAGCTGATAGCAAACTTACTCTTACCATTTTGGATC
TTATTCAACAATCAAACAATTTAGGCCAATTAAAGAAAGGTGCTAACGAATGTACCAAAG
CCGTTTCACGTAGTACTGCTGAATTTGTTGTTTTAGCCGCTGATGCTGAACCATTAGAAA
TTTTATTACACATTCCATTATTATGTGAAGATAAGAATATTCCATACGTTTTCGTTTCAA
GCAAATCCGAACTCGGTAGAGCTTGTGATGTTTCAAGACCAGTTGTTGCTTGTGCTGTTA
CTGTCGATGATAAGAGTCAATTGAAATCTCAAATCACTAACGTTAAAGATTCATTAGACA
GATTATGGATCGTTTAAATTCGATTCATTTCATGTATTTTTTTTATAATACAAATGTGTA
CATATATACATCAAAATTATCTAAATTTTAATTTTTTTTTTTTTTTAAAAAAAAAAAAAA
AAAAAAAAATAGATAATAATTTTTTTGTATTATTTAAATAATATCAGCTAAAATTAGTTT
ATTTCAACCACCCTTTTTTTTGAAATGGATTTTTTTAAAATAAAATTAAACTTTAA
Length of 3' end seq. 586
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -