>VSA209 (VSA209Q) /CSM/VS/VSA2-A/VSA209Q.Seq.d/
XXXXXXXXXXACTGGTGATGACAAATGGGAAGATTATCCACAAGATGATAATGTTGAAGG
TAATGAAGCAAACTTAAAAGTTGGTGAAGCCATTAAAAACATTGGTAATGATTATTTTAA
ACAAGGTAAATCATTAGAAGCCATAGCCAAATACAATAAAGCATTAAGATATTTAGATTG
TTGTAGTAATATCGATGGTTTAAAGAATGTTCAAACCATTTGTTATAATAATATGTCACA
ATGTTATTTAAAGGAAAAAAAGGTTCCAATGCTTTGGTGGCTGCAAAAAAAGCATTAGAA
TTATCACCAAATGATATTAAAGCACTCTTTAGAAAAGCTAAAGCTTTATCTTTAATGGAG
GAATATGATGAAGCTATCAAAGATTTCCAAAAAATCATTGAAACCGATTCCGAGAATAAA
GATGCAAAACTTGAATTAGAAAGAATTAAAATTACAAAAAGCAAAAGATCTTAAAAGTGC
CAAAGCTTATTCAAAACTTTTTTCTGATGATGATTAGAAAATTTTCTAAAAAAAACACAA
TAAAAAAACAAATA

---GDDKWEDYPQDDNVEGNEANLKVGEAIKNIGNDYFKQGKSLEAIAKYNKALRYLDCC
SNIDGLKNVQTICYNNMSQCYLKEKKVPMLWWLQKKH*nyhqmilkhsleklklyl*wrn
mmklskiskkslkpiprikmqnln*kelklqkakdlksakaysklfsddd*kif*kkhnk
ktn

Frame A:
---lvmtngkiihkmimlkvmkqt*klvkplktlvmiilnkvnh*kp*pntikh*di*iv
vvismv*rmfkpfviiichnvi*rkkrfqcfggckksiriitk*y*stl*ks*sfifngg
i**syqrfpknh*nrfre*rckt*irkn*nykkqkilkvpkliqnfflmmirkfskknti
kkqi


Frame B:
---w**qmgrlstr**c*r**sklksw*sh*khw**lf*tr*iirshsqiq*sikifrll
**yrwfkecsnhll**yvtmlfkgkkgsnalvaakkalelspndikalfrkakalslmee
ydeaikdfqkiietdsenkdaklelerikitkskrs*kcqslfktff***lenflkktq*
knk


Frame C:
---GDDKWEDYPQDDNVEGNEANLKVGEAIKNIGNDYFKQGKSLEAIAKYNKALRYLDCC
SNIDGLKNVQTICYNNMSQCYLKEKKVPMLWWLQKKH*nyhqmilkhsleklklyl*wrn
mmklskiskkslkpiprikmqnln*kelklqkakdlksakaysklfsddd*kif*kkhnk
ktn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA209 (VSA209Q) /CSM/VS/VSA2-A/VSA209Q.Seq.d/                        942   0.0
VFD272 (VFD272Q) /CSM/VF/VFD2-C/VFD272Q.Seq.d/                        680   0.0
CHA143 (CHA143Q) /CSM/CH/CHA1-B/CHA143Q.Seq.d/                        652   0.0
VFF758 (VFF758Q) /CSM/VF/VFF7-C/VFF758Q.Seq.d/                        622   e-177
VFC858 (VFC858Q) /CSM/VF/VFC8-C/VFC858Q.Seq.d/                        613   e-174
SLK849 (SLK849Q) /CSM/SL/SLK8-C/SLK849Q.Seq.d/                        408   e-113
VFK629 (VFK629Q) /CSM/VF/VFK6-B/VFK629Q.Seq.d/                        180   1e-44
AFO662 (AFO662Q) /CSM/AF/AFO6-C/AFO662Q.Seq.d/                        137   2e-31
VHP805 (VHP805Q) /CSM/VH/VHP8-A/VHP805Q.Seq.d/                         40   0.035
VFI264 (VFI264Q) /CSM/VF/VFI2-C/VFI264Q.Seq.d/                         38   0.14

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014092|AE014092.1 Buchnera aphidicola str. Sg (Schizaphis graminum) section 17 of 57 of the complete genome.    36  0.14  3
AC006341|AC006341.2 Arabidopsis thaliana chromosome 1 BAC F3O9 sequence, complete sequence.    38  0.26  4
AC026169|AC026169.2 Homo sapiens chromosome 3 clone RP11-156H1 map 3p, WORKING DRAFT SEQUENCE, 19 unordered pieces.    46  0.27  2
AC026198|AC026198.2 Homo sapiens chromosome 3 clone RP11-499N6 map 3p, WORKING DRAFT SEQUENCE, 23 unordered pieces.    46  0.46  1
AC026175|AC026175.4 Homo sapiens chromosome 3 clone RP11-181F22 map 3p, WORKING DRAFT SEQUENCE, 16 unordered pieces.    46  0.46  1
AC007174|AC007174.4 Homo sapiens clone RP11-93A1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    46  0.46  1
AC018812|AC018812.5 Homo sapiens chromosome 3 clone RP11-161D20 map 3p, complete sequence.    46  0.65  3
AC020752|AC020752.3 Homo sapiens chromosome 3p clone RP11-30M15, WORKING DRAFT SEQUENCE, 8 unordered pieces.    46  0.76  3
AC022002|AC022002.5 Homo sapiens chromosome 3 clone RP11-198P17 map 3p, complete sequence.    46  0.78  3
AC120626|AC120626.5 Rattus norvegicus clone CH230-98E20, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.    34  0.82  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC061335_1(BC061335|pid:none) Xenopus tropicalis peptidylprolyl ...    61   3e-14
BC071388_1(BC071388|pid:none) Danio rerio peptidylprolyl isomera...    60   2e-13
BT073249_1(BT073249|pid:none) Oncorhynchus mykiss clone omyk-evn...    53   8e-12
(Q6DGG0) RecName: Full=40 kDa peptidyl-prolyl cis-trans isomeras...    50   8e-12
BT073082_1(BT073082|pid:none) Oncorhynchus mykiss clone omyk-evn...    52   1e-11
BT043603_1(BT043603|pid:none) Salmo salar clone HM4_3222 peptidy...    51   2e-11
BT037856_1(BT037856|pid:none) Zea mays full-length cDNA clone ZM...    53   3e-11
L11668_1(L11668|pid:none) Cow cyclophilin-40 mRNA, partial cds.        49   4e-11
BT061922_1(BT061922|pid:none) Zea mays full-length cDNA clone ZM...    54   7e-11
AK063937_1(AK063937|pid:none) Oryza sativa Japonica Group cDNA c...    54   9e-11

 psg: 0.75  gvh: 0.18  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 48.0 %: nuclear
	  4.0 %: mitochondrial

>> prediction for VSA209 is cyt

>VSA209Z.Seq
----------ACTGGTGATGACAAATGGGAAGATTATCCACAAGATGATAATGTTGAAGG
TAATGAAGCAAACTTAAAAGTTGGTGAAGCCATTAAAAACATTGGTAATGATTATTTTAA
ACAAGGTAAATCATTAGAAGCCATAGCCAAATACAATAAAGCATTAAGATATTTAGATTG
TTGTAGTAATATCGATGGTTTAAAGAATGTTCAAACCATTTGTTATAATAATATGTCACA
ATGTTATTTAAAGGAAAAAAAGGTTCCAATGCTTTGGTGGCTGCAAAAAAAGCATTAGAA
TTATCACCAAATGATATTAAAGCACTCTTTAGAAAAGCTAAAGCTTTATCTTTAATGGAG
GAATATGATGAAGCTATCAAAGATTTCCAAAAAATCATTGAAACCGATTCCGAGAATAAA
GATGCAAAACTTGAATTAGAAAGAATTAAAATTACAAAAAGCAAAAGATCTTAAAAGTGC
CAAAGCTTATTCAAAACTTTTTTCTGATGATGATTAGAAAATTTTCTAAAAAAAACACAA
TAAAAAAACAAATA