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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSA196
Library VS
(Link to library)
Clone ID VSA196
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12167-1
Original site URL
Representative seq. ID VSA196E
(Link to Original site)
Representative DNA sequence 
>VSA196 (VSA196Q) /CSM/VS/VSA1-D/VSA196Q.Seq.d/
ACACATAGCATATAAATTAACAACAATGGAAGGAGAACAATTACAAACTGCACCATACAA
CCCAAGATTCCCACAACAAAACCAAACTAAACATTGTTGGGCTAACTACGTTGATTACTA
TGGTTGTGTCAAACATTACAATGGTGACAACTCAAAATGTCAAACTTTTTTCAACTCAAT
GAACTCATTATGTCCAGCTGCCTGGATTTCAGAATGGGATGAACAAAAAGCCGCTGATCT
CTTCCCATCAGACAGAGTTTAAATATATAATATAAATAATTAATAGTAGTATCAATAATT
TATTCAAAAAAAAAGAAAAAAAAAAAAGAACATAATGATATAAAT
sequence update 2000. 2.29
Translated Amino Acid sequence 
HIAYKLTTMEGEQLQTAPYNPRFPQQNQTKHCWANYVDYYGCVKHYNGDNSKCQTFFNSM
NSLCPAAWISEWDEQKAADLFPSDRV*iyninn***yq*fiqkkrkkkknimi*
Translated Amino Acid sequence (All Frames) 
Frame A:
thsi*innngrrtitnctiqpkipttkpn*tllg*lr*llwlcqtlqw*qlkmsnffqln
elimsscldfrmg*tksr*slpirqslni*yk*livvsiiyskkkkkkkehndin


Frame B:
HIAYKLTTMEGEQLQTAPYNPRFPQQNQTKHCWANYVDYYGCVKHYNGDNSKCQTFFNSM
NSLCPAAWISEWDEQKAADLFPSDRV*iyninn***yq*fiqkkrkkkknimi*


Frame C:
t*hin*qqwkennyklhhttqdshnktklnivglttlitmvvsnitmvttqnvklfstq*
thyvqlpgfqngmnkkplisshqtefkyii*iinssinnlfkkkekkkrt**yk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH265 (VSH265Q) /CSM/VS/VSH2-C/VSH265Q.Seq.d/                        605   e-172
VSD559 (VSD559Q) /CSM/VS/VSD5-C/VSD559Q.Seq.d/                        605   e-172
VSA196 (VSA196Q) /CSM/VS/VSA1-D/VSA196Q.Seq.d/                        605   e-172
VHK558 (VHK558Q) /CSM/VH/VHK5-C/VHK558Q.Seq.d/                        605   e-172
VSI263 (VSI263Q) /CSM/VS/VSI2-C/VSI263Q.Seq.d/                        603   e-172
SSF773 (SSF773Q) /CSM/SS/SSF7-D/SSF773Q.Seq.d/                        589   e-167
VSH131 (VSH131Q) /CSM/VS/VSH1-B/VSH131Q.Seq.d/                        587   e-167
SSE738 (SSE738Q) /CSM/SS/SSE7-B/SSE738Q.Seq.d/                        583   e-166
VSJ228 (VSJ228Q) /CSM/VS/VSJ2-B/VSJ228Q.Seq.d/                        565   e-160
VSF762 (VSF762Q) /CSM/VS/VSF7-C/VSF762Q.Seq.d/                        565   e-160
own update 2003. 1. 8
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC122291|AC122291.4 Mus musculus chromosome 15 clone RP23-255N20, complete sequence.    42  0.009  2
AX537130|AX537130.1 Sequence 731 from Patent WO02064766.          44  0.014  2
AL404156|AL404156.1 T7 end of clone AT0AA013E12 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii.    40  0.044  2
AC102601|AC102601.7 Mus musculus, clone RP23-379D23, complete sequence.    54  0.048  5
AC118594|AC118594.3 Mus musculus clone RP24-479J20, WORKING DRAFT SEQUENCE, 7 unordered pieces.    54  0.074  3
AC117576|AC117576.3 Mus musculus clone RP23-34E15, WORKING DRAFT SEQUENCE, 14 unordered pieces.    50  0.075  4
BF298705|BF298705.1 020PbC11 Pb cDNA #20, Charles Yowell and Jane Carlton Plasmodium berghei cDNA 5', mRNA sequence.    44  0.13  2
BF294945|BF294945.1 010PbE09 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    44  0.14  2
BF294944|BF294944.1 010PbE08 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    44  0.14  2
AX537066|AX537066.1 Sequence 667 from Patent WO02064766.          44  0.15  3
dna update 2003. 9.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P95) RecName: Full=Probable cytochrome c oxidase subunit 6B;      178   6e-44
FN392322_439(FN392322|pid:none) Pichia pastoris GS115 chromosome...    91   1e-17
(Q01519) RecName: Full=Cytochrome c oxidase subunit 6B; AltName:...    89   5e-17
AM920427_744(AM920427|pid:none) Penicillium chrysogenum Wisconsi...    87   1e-16
AM269997_1(AM269997|pid:none) Aspergillus niger contig An02c0020...    87   2e-16
CR382131_683(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    86   4e-16
CR382126_746(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    86   4e-16
CP000497_298(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    84   2e-15
AE017346_138(AE017346|pid:none) Cryptococcus neoformans var. neo...    84   2e-15
(P14854) RecName: Full=Cytochrome c oxidase subunit 6B1; AltName...    82   6e-15
protein update 2009. 7.22
PSORT 

 psg: 0.65  gvh: 0.22  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VSA196 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSA196E
Full length Seq. 
>VSA196E.Seq
ACACATAGCATATAAATTAACAACAATGGAAGGAGAACAATTACAAACTGCACCATACAA
CCCAAGATTCCCACAACAAAACCAAACTAAACATTGTTGGGCTAACTACGTTGATTACTA
TGGTTGTGTCAAACATTACAATGGTGACAACTCAAAATGTCAAACTTTTTTCAACTCAAT
GAACTCATTATGTCCAGCTGCCTGGATTTCAGAATGGGATGAACAAAAAGCCGCTGATCT
CTTCCCATCAGACAGAGTTTAAATATATAATATAAATAATTAATAGTAGTATCAATAATT
TATTCAAAAAAAAAGAAAAAAAAAAAAGAACATAATGATATAAAT
Length of full length seq. 345