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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA119
Library AH
(Link to library)
Clone ID AHA119
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11503-1
Original site URL
Representative seq. ID AHA119E
(Link to Original site)
Representative DNA sequence 
>AHA119 (AHA119Q) /CSM/AH/AHA1-A/AHA119Q.Seq.d/
ATCAAAAAAAACAGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATT
TTTCAATTTTGTTTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCC
CAAATTCAACGATTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGAT
GTGGTTTTAATAACGAGCCGATATGCACATCACTCAAAGATGCTGTTAGCAGAGCATTTT
TATTAATATCAAATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAAATGTAACAT
CAGAACAAATTACATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCA
ATAATGAAAATAATAATTATACAATAATCGATGGATCAAGCTCAACCCAACCATTTNTGA
CATATGAACCAGAAGAAGAAAATAACCAAACTCAATCATGTTCAAGATGGCTCTTCTTTC
AATATATGAATTTCACAAGTTGGGATTGGAAATAATTCAGATGTGAATTTATCAAAAAAA
AGCACTAAATTAAATAACATTTATTGTGGTTGTGAAGAATGTAAATATTTTCTTATATAT
GGTTCTCAATTTATTCCCATCGTTAACCACACTTGCATTGATCCGACACTGACACCGACA
CCAACAACCTCAACAACATCTACTACATTTGCTTCCACAACATCAACCACAACTACTTCA
ACAACATCAAACGCATCAGCTGGAACAACATCAACTACTTCAGCTGCAACAACACCAACC
ACATCAGCTTTAACAACATCAACTACAACTACAACATCAACTACAACAACTATAACTACC
TCAACTACATTACCATCAACATCAACAACAACAAGTCCAATTGATAGTAAGACTAGGAAT
ATTATCATTGTTACAGTTATTTTGGGCTTGATCTATAGCATGTGGTAGACTATGGACGTC
AATTGAAGATTATGCGGATAGGTTAACTCAACTTCANATCTCATATCGTTTTTACACTGT
ATTATTACAAGAAA
sequence update 2002.10.26
Translated Amino Acid sequence 
qkkqfsl*iy*YMIRKSNNFSILFAIFLKIVFVVSAPLCPNSTILLNYNILTVYNSSEGC
GFNNEPICTSLKDAVSRAFLLISNNSRVCIGIIGNINVTSEQITLGNYCGALWITSENIN
NENNNYTIIDGSSSTQPFXTYEPEEENNQTQSCSRWLFFQYMNFTSWDWK*frcefikkk
h*ik*hllwl*rm*ifsyiwfsiyshr*phlh*sdtdtdtnnlnniyyicfhninhnyfn
nikriswnninyfscnntnhisfnninynyninynnynylnyitininnnksn***d*ey
yhcysyfgldl*hvvdygrqlkimrig*lnfxshivftlyyykk
Translated Amino Acid sequence (All Frames) 
Frame A:
ikknsflckfini*lenqiifqfclqyf*klflwfqrryaqiqrfy*itts*rfiihqkd
vvlitsryahhskmllaehfy*yqiivvfvlvslvi*m*hqnklhwviivvpcgslqkis
imkiiiiq*smdqaqpnhx*hmnqkkkitklnhvqdgssfni*isqvgignnsdvnlskk
stklnniycgceeckyfliygsqfipivnhtcidptltptpttsttsttfasttstttts
ttsnasagttsttsaattpttsalttstttttsttttittsttlpststttspidsktrn
iiivtvilgliysmw*tmdvn*rlcg*vnstsxlisflhciitr


Frame B:
skktvffvnlliyd*kik*ffnfvcnifkncfcgfsaampkfndfiklqhpngl*firrm
wf**radmhitqrcc*qsifinik**sclywyhw*ykcnirtnyig*llwclvdhfrkyq
**k**lynnrwiklnptixdi*trrrk*pnsimfkmallsiyefhklgleiiqm*iyqkk
aln*itfivvvknvniflymvlnlfpslttlalirh*hrhqqpqqhllhllpqhqpqllq
qhqthqleqhqllqlqqhqphql*qhqlqlqhqlqql*lpqlhyhqhqqqqvqlivrlgi
lsllqlfwa*siacgrlwtsiedyadrltqlxisyrfytvllqe


Frame C:
qkkqfsl*iy*YMIRKSNNFSILFAIFLKIVFVVSAPLCPNSTILLNYNILTVYNSSEGC
GFNNEPICTSLKDAVSRAFLLISNNSRVCIGIIGNINVTSEQITLGNYCGALWITSENIN
NENNNYTIIDGSSSTQPFXTYEPEEENNQTQSCSRWLFFQYMNFTSWDWK*frcefikkk
h*ik*hllwl*rm*ifsyiwfsiyshr*phlh*sdtdtdtnnlnniyyicfhninhnyfn
nikriswnninyfscnntnhisfnninynyninynnynylnyitininnnksn***d*ey
yhcysyfgldl*hvvdygrqlkimrig*lnfxshivftlyyykk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE495 (VHE495Q) /CSM/VH/VHE4-D/VHE495Q.Seq.d/                       1253   0.0
SHD533 (SHD533Q) /CSM/SH/SHD5-B/SHD533Q.Seq.d/                       1253   0.0
AHK839 (AHK839Q) /CSM/AH/AHK8-B/AHK839Q.Seq.d/                       1253   0.0
AHF753 (AHF753Q) /CSM/AH/AHF7-C/AHF753Q.Seq.d/                       1253   0.0
AHA119 (AHA119Q) /CSM/AH/AHA1-A/AHA119Q.Seq.d/                       1253   0.0
SHC657 (SHC657Q) /CSM/SH/SHC6-C/SHC657Q.Seq.d/                       1247   0.0
AHK570 (AHK570Q) /CSM/AH/AHK5-C/AHK570Q.Seq.d/                       1247   0.0
AHG336 (AHG336Q) /CSM/AH/AHG3-B/AHG336Q.Seq.d/                       1247   0.0
AHC551 (AHC551Q) /CSM/AH/AHC5-C/AHC551Q.Seq.d/                       1247   0.0
AHC489 (AHC489Q) /CSM/AH/AHC4-D/AHC489Q.Seq.d/                       1247   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           38   1e-08  23
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   1e-08  19
AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    36   3e-07  7
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   1e-06  19
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   1e-06  16
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    36   3e-06  10
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    36   1e-05  14
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    36   1e-05  14
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   6e-05  16
CR376736|CR376736.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-86G11.    54   6e-05  7
dna update 2004. 3.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF020283_1(AF020283|pid:none) Dictyostelium discoideum DG2044 ge...    56   2e-06
CP000766_763(CP000766|pid:none) Rickettsia rickettsii str. Iowa,...    37   1.5
AE006914_723(AE006914|pid:none) Rickettsia conorii str. Malish 7...    35   5.5
CP001227_577(CP001227|pid:none) Rickettsia peacockii str. Rustic...    35   5.5
protein update 2009. 6.29
PSORT 

 psg: 0.99  gvh: 0.48  alm: 0.21  top: 0.27  tms: 0.07  mit: 0.47  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.45  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: mitochondrial
	 20.0 %: Golgi
	 12.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for AHA119 is mit
5' end seq. ID AHA119F
5' end seq. 
>AHA119F.Seq
ATCAAAAAAAACAGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATT
TTTCAATTTTGTTTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCC
CAAATTCAACGATTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGAT
GTGGTTTTAATAACGAGCCGATATGCACATCACTCAAAGATGCTGTTAGCAGAGCATTTT
TATTAATATCAAATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAAATGTAACAT
CAGAACAAATTACATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCA
ATAATGAAAATAATAATTATACAATAATCGATGGATCAAGCTCAACCCANCCNNNNNNNN
NN
Length of 5' end seq. 422
3' end seq. ID AHA119Z
3' end seq. 
>AHA119Z.Seq
NNNNNNNNNNGATCACTTCAGAAAATATCAATAATGAAAATAATAATTATNCAATAATCG
AGGATCAAGCTCAACCCAACCATTTNTGACATATGAACCAGAAGAAGAAAATAACCAAAC
TCAATCATGTTCAAGATGGCTCTTCTTTCAATATATGAATTTCACAAGTTGGGATTGGAA
ATAATTCAGATGTGAATTTATCAAAAAAAAGCACTAAATTAAATAACATTTATTGTGGTT
GTGAAGAATGTAAATATTTTCTTATATATGGTTCTCAATTTATTCCCATCGTTAACCACA
CTTGCATTGATCCGACACTGACACCGACACCAACAACCTCAACAACATCTACTACATTTG
CTTCCACAACATCAACCACAACTACTTCAACAACATCAAACGCATCAGCTGGAACAACAT
CAACTACTTCAGCTGCAACAACACCAACCACATCAGCTTTAACAACATCAACTACAACTA
CAACATCAACTACAACAACTATAACTACCTCAACTACATTACCATCAACATCAACAACAA
CAAGTCCAATTGATAGTAAGACTAGGAATATTATCATTGTTACAGTTATTTTGGGCTTGA
TCTATAGCATGTGGTAGACTATGGACGTCAATTGAAGATTATGCGGATAGGTTAACTCAA
CTTCANATCTCATATCGTTTTTACACTGTATTATTACAAGAAA
Length of 3' end seq. 703
Connected seq. ID AHA119P
Connected seq. 
>AHA119P.Seq
ATCAAAAAAAACAGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATT
TTTCAATTTTGTTTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCC
CAAATTCAACGATTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGAT
GTGGTTTTAATAACGAGCCGATATGCACATCACTCAAAGATGCTGTTAGCAGAGCATTTT
TATTAATATCAAATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAAATGTAACAT
CAGAACAAATTACATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCA
ATAATGAAAATAATAATTATACAATAATCGATGGATCAAGCTCAACCCANCC--------
--GATCACTTCAGAAAATATCAATAATGAAAATAATAATTATNCAATAATCGAGGATCAA
GCTCAACCCAACCATTTNTGACATATGAACCAGAAGAAGAAAATAACCAAACTCAATCAT
GTTCAAGATGGCTCTTCTTTCAATATATGAATTTCACAAGTTGGGATTGGAAATAATTCA
GATGTGAATTTATCAAAAAAAAGCACTAAATTAAATAACATTTATTGTGGTTGTGAAGAA
TGTAAATATTTTCTTATATATGGTTCTCAATTTATTCCCATCGTTAACCACACTTGCATT
GATCCGACACTGACACCGACACCAACAACCTCAACAACATCTACTACATTTGCTTCCACA
ACATCAACCACAACTACTTCAACAACATCAAACGCATCAGCTGGAACAACATCAACTACT
TCAGCTGCAACAACACCAACCACATCAGCTTTAACAACATCAACTACAACTACAACATCA
ACTACAACAACTATAACTACCTCAACTACATTACCATCAACATCAACAACAACAAGTCCA
ATTGATAGTAAGACTAGGAATATTATCATTGTTACAGTTATTTTGGGCTTGATCTATAGC
ATGTGGTAGACTATGGACGTCAATTGAAGATTATGCGGATAGGTTAACTCAACTTCANAT
CTCATATCGTTTTTACACTGTATTATTACAAGAAA
Length of connected seq. 1105
Full length Seq ID AHA119E
Full length Seq. 
>AHA119E.Seq
ATCAAAAAAAACAGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATT
TTTCAATTTTGTTTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCC
CAAATTCAACGATTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGAT
GTGGTTTTAATAACGAGCCGATATGCACATCACTCAAAGATGCTGTTAGCAGAGCATTTT
TATTAATATCAAATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAAATGTAACAT
CAGAACAAATTACATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCA
ATAATGAAAATAATAATTATACAATAATCGATGGATCAAGCTCAACCCAACCATTTNTGA
CATATGAACCAGAAGAAGAAAATAACCAAACTCAATCATGTTCAAGATGGCTCTTCTTTC
AATATATGAATTTCACAAGTTGGGATTGGAAATAATTCAGATGTGAATTTATCAAAAAAA
AGCACTAAATTAAATAACATTTATTGTGGTTGTGAAGAATGTAAATATTTTCTTATATAT
GGTTCTCAATTTATTCCCATCGTTAACCACACTTGCATTGATCCGACACTGACACCGACA
CCAACAACCTCAACAACATCTACTACATTTGCTTCCACAACATCAACCACAACTACTTCA
ACAACATCAAACGCATCAGCTGGAACAACATCAACTACTTCAGCTGCAACAACACCAACC
ACATCAGCTTTAACAACATCAACTACAACTACAACATCAACTACAACAACTATAACTACC
TCAACTACATTACCATCAACATCAACAACAACAAGTCCAATTGATAGTAAGACTAGGAAT
ATTATCATTGTTACAGTTATTTTGGGCTTGATCTATAGCATGTGGTAGACTATGGACGTC
AATTGAAGATTATGCGGATAGGTTAACTCAACTTCANATCTCATATCGTTTTTACACTGT
ATTATTACAAGAAA
Length of full length seq. 1034