VSA185
Library VS
(Link to library)
Clone ID VSA185
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16263-1
Original site URL
Representative seq. ID VSA185Z
(Link to Original site)
Representative DNA sequence
>VSA185 (VSA185Q) /CSM/VS/VSA1-D/VSA185Q.Seq.d/
XXXXXXXXXXATCAATAGTTTTGGTGCAACTGAACTCTCAAAGGATGATCGTGAAAAACT
TTACCCATCCTTAGGTCTTTTATACCCAGAAGGTACTAGCAAACTTGGTAAAGCTGAAGA
CGTTGATCAAGTTAGAGGTATCCTCGAAGTTTACTCTACCTATCGTAATTTCTTCTCTGA
TGGTGTCAACAACGAGAAATCATTGGAAGACTCATTCTTTGAACATGAAGTTCACTTAAA
TCGTATGGCTTTTGAAGATCAATATGGTTATGGTGTCTTTTACGCTTACATTAAATTAAG
AGAACAAGAAATTAGAAATATAGTTTGGATTGCTGAATGTATTAGTCAAAATATGAAACA
AAAAATGAATCAATACATTCCAATCTTTTAAAAAAATAACTATATCTAATTATTAAAAAA
AAATAAAAAACAAAATAAAAAAAAAATAAAATAAAATAAAACAATAATAAAAAAAAAAAA
AATAAAAAAAAATCAAAGTAATCAAATAAATAAAAATAAAAATAAAAATAATTTAATAAA
TAAA
sequence update 2000. 2.29
Translated Amino Acid sequence
---NSFGATELSKDDREKLYPSLGLLYPEGTSKLGKAEDVDQVRGILEVYSTYRNFFSDG
VNNEKSLEDSFFEHEVHLNRMAFEDQYGYGVFYAYIKLREQEIRNIVWIAECISQNMKQK
MNQYIPIF*knnyi*llkknkkqnkkkik*nktiikkkkikknqsnqinknknknnlink


Translated Amino Acid sequence (All Frames)
Frame A:
---sivlvqlnsqrmivknfthp*vfytqkvlanlvklktliklevsskftlpivisslm
vsttrnhwkthslnmkft*ivwllkinmvmvsftltln*enkklei*fgllnvlvki*nk
k*intfqsfkkitisny*kkiknkikkk*nkikq**kkkk*kkikvik*ikikikii**i


Frame B:
---q*fwcn*tlkg*s*ktlpilrsfiprry*qtw*s*rr*ss*ryprsllyls*fll*w
cqqreiigrlil*t*sslksygf*rsiwlwcllrlh*ikrtrn*kysldc*my*skyetk
nesihsnllkk*lyliikkk*ktk*kknkik*nnnkkkknkkksk*snk*k*k*k*fnk*


Frame C:
---NSFGATELSKDDREKLYPSLGLLYPEGTSKLGKAEDVDQVRGILEVYSTYRNFFSDG
VNNEKSLEDSFFEHEVHLNRMAFEDQYGYGVFYAYIKLREQEIRNIVWIAECISQNMKQK
MNQYIPIF*knnyi*llkknkkqnkkkik*nktiikkkkikknqsnqinknknknnlink


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSE491 (VSE491Q) /CSM/VS/VSE4-D/VSE491Q.Seq.d/ 759 0.0
VSA730 (VSA730Q) /CSM/VS/VSA7-B/VSA730Q.Seq.d/ 759 0.0
VSA185 (VSA185Q) /CSM/VS/VSA1-D/VSA185Q.Seq.d/ 759 0.0
SSM519 (SSM519Q) /CSM/SS/SSM5-A/SSM519Q.Seq.d/ 759 0.0
SSK753 (SSK753Q) /CSM/SS/SSK7-C/SSK753Q.Seq.d/ 759 0.0
SSK721 (SSK721Q) /CSM/SS/SSK7-A/SSK721Q.Seq.d/ 759 0.0
SSK423 (SSK423Q) /CSM/SS/SSK4-A/SSK423Q.Seq.d/ 759 0.0
SSI366 (SSI366Q) /CSM/SS/SSI3-C/SSI366Q.Seq.d/ 759 0.0
SSI279 (SSI279Q) /CSM/SS/SSI2-D/SSI279Q.Seq.d/ 759 0.0
SSH558 (SSH558Q) /CSM/SS/SSH5-C/SSH558Q.Seq.d/ 759 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 751 0.0 2
U13150|U13150.1 Dictyostelium discoideum vacuolar ATPase subunit DVA41 mRNA, complete cds. 735 0.0 2
BE029219|BE029219.1 kp26d05.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:VATX_BOVIN P12953 VACUOLAR ATP SYNTHASE SUBUNIT AC39 ;, mRNA sequence. 76 4e-14 2
BU768904|BU768904.1 SJEBZB10 SJE Schistosoma japonicum cDNA, mRNA sequence. 54 0.002 1
AI067329|AI067329.1 EST209007 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNAS63 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence. 54 0.002 1
AI067936|AI067936.1 EST209624 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCG92 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence. 54 0.002 1
AI067953|AI067953.1 EST209642 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCH20 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence. 54 0.002 1
BU776849|BU776849.1 SJEDDD08 SJE Schistosoma japonicum cDNA, mRNA sequence. 54 0.002 1
AI067312|AI067312.1 EST208990 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNAS44 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence. 54 0.002 1
BU715793|BU715793.1 SJM2ABF05 SJM Schistosoma japonicum cDNA, mRNA sequence. 48 0.11 1
dna update 2003. 8.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A55016(A55016) lysosomal membrane protein DVA41 - slime mold (Di... 259 4e-68
(P54641) RecName: Full=V-type proton ATPase subunit d; ... 259 4e-68
(Q5ZHL0) RecName: Full=V-type proton ATPase subunit d 2; ... 159 6e-38
BT081086_1(BT081086|pid:none) Caligus clemensi clone ccle-evs-51... 153 3e-36
BC125665_1(BC125665|pid:none) Xenopus tropicalis ATPase, H+ tran... 152 7e-36
BC042233_1(BC042233|pid:none) Xenopus laevis ATPase, H+ transpor... 151 9e-36
BT077935_1(BT077935|pid:none) Lepeophtheirus salmonis Pacific fo... 151 9e-36
AY648766_1(AY648766|pid:none) Danio rerio v-ATPase AC39 subunit ... 151 1e-35
(P51863) RecName: Full=V-type proton ATPase subunit d 1; ... 150 2e-35
(P61420) RecName: Full=V-type proton ATPase subunit d 1; ... 150 2e-35
protein update 2009. 7.22
PSORT

psg: 0.75 gvh: 0.33 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial

>> prediction for VSA185 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSA185Z
3' end seq.
>VSA185Z.Seq
----------ATCAATAGTTTTGGTGCAACTGAACTCTCAAAGGATGATCGTGAAAAACT
TTACCCATCCTTAGGTCTTTTATACCCAGAAGGTACTAGCAAACTTGGTAAAGCTGAAGA
CGTTGATCAAGTTAGAGGTATCCTCGAAGTTTACTCTACCTATCGTAATTTCTTCTCTGA
TGGTGTCAACAACGAGAAATCATTGGAAGACTCATTCTTTGAACATGAAGTTCACTTAAA
TCGTATGGCTTTTGAAGATCAATATGGTTATGGTGTCTTTTACGCTTACATTAAATTAAG
AGAACAAGAAATTAGAAATATAGTTTGGATTGCTGAATGTATTAGTCAAAATATGAAACA
AAAAATGAATCAATACATTCCAATCTTTTAAAAAAATAACTATATCTAATTATTAAAAAA
AAATAAAAAACAAAATAAAAAAAAAATAAAATAAAATAAAACAATAATAAAAAAAAAAAA
AATAAAAAAAAATCAAAGTAATCAAATAAATAAAAATAAAAATAAAAATAATTTAATAAA
TAAA
Length of 3' end seq. 534
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -