>VSA173 (VSA173Q) /CSM/VS/VSA1-D/VSA173Q.Seq.d/
ATTTACAAACAAGACTAAATGTACAAAGAACCAAGAAACGAGAGTGAATACGAAGCTGAA
CTCAAATACGCTCCAGTCGCTGTTGTTTATCTCACTGCTACCTGGTGTGGCCCATGTCGT
GCTATCGCCCCAGTTTTCACCAACATTTCAAATGCACCAGAAAACAGCAAAATCACTTTT
TTCAAAGTTGATGTTGATGCCCTTAAAAAATTACCAGTTTGTGAATCACTCCAAGGTGTC
CCAACTTTCATTGCTTACAGAAATGGTGAAGAACAAGAAAGATTCTCTGGTGCCAATAAA
GTAGCCCTTGAAAATATGGTCAAAAAACTCTTATAAATAAATAATCTATAGAATTTGT

iykqd*MYKEPRNESEYEAELKYAPVAVVYLTATWCGPCRAIAPVFTNISNAPENSKITF
FKVDVDALKKLPVCESLQGVPTFIAYRNGEEQERFSGANKVALENMVKKLL*innl*nl

Frame A:
iykqd*MYKEPRNESEYEAELKYAPVAVVYLTATWCGPCRAIAPVFTNISNAPENSKITF
FKVDVDALKKLPVCESLQGVPTFIAYRNGEEQERFSGANKVALENMVKKLL*innl*nl


Frame B:
ftnktkctknqetrvntklnsntlqsllfisllpgvahvvlspqfsptfqmhqktakslf
sklmlmplknyqfvnhskvsqlslltemvknkkdslvpik*plkiwsknsyk*iiyric


Frame C:
lqtrlnvqrtkkre*irs*tqirssrcclshcylvwpmscyrpsfhqhfkctrkqqnhff
qs*c*cp*kitsl*itprcpnfhclqkw*rtrkilwcq*ssp*kygqktlink*sief

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA173 (VSA173Q) /CSM/VS/VSA1-D/VSA173Q.Seq.d/                        710   0.0
VSJ526 (VSJ526Q) /CSM/VS/VSJ5-B/VSJ526Q.Seq.d/                        678   0.0
VSA165 (VSA165Q) /CSM/VS/VSA1-C/VSA165Q.Seq.d/                        678   0.0
VFG868 (VFG868Q) /CSM/VF/VFG8-C/VFG868Q.Seq.d/                        678   0.0
VSJ701 (VSJ701Q) /CSM/VS/VSJ7-A/VSJ701Q.Seq.d/                        666   0.0
VSG588 (VSG588Q) /CSM/VS/VSG5-D/VSG588Q.Seq.d/                        666   0.0
VSF416 (VSF416Q) /CSM/VS/VSF4-A/VSF416Q.Seq.d/                        662   0.0
VSF262 (VSF262Q) /CSM/VS/VSF2-C/VSF262Q.Seq.d/                        662   0.0
VSB571 (VSB571Q) /CSM/VS/VSB5-C/VSB571Q.Seq.d/                        662   0.0
VSC387 (VSC387Q) /CSM/VS/VSC3-D/VSC387Q.Seq.d/                        654   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BQ507669|BQ507669.2 EST615084 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGR77 3' end, mRNA sequence.    32  0.069  3
BG598337|BG598337.1 EST497015 cSTS Solanum tuberosum cDNA clone cSTS20D12 5' sequence, mRNA sequence.    32  0.070  3
BQ507668|BQ507668.1 EST615083 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGR77 5' end, mRNA sequence.    32  0.074  3
BX470070|BX470070.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-194B21.    46  0.29  1
AL929053|AL929053.5 Zebrafish DNA sequence from clone DKEY-21N12 in linkage group 20.    44  1.1  1
BF068694|BF068694.1 st31f07.y1 Gm-c1067 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1067-661 5' similar to SW:THII_TOBAC Q07090 THIOREDOXIN H-TYPE 2 ;, mRNA sequence.    44  1.1  1
CF404628|CF404628.1 CSECS066F03_PREu0032 CabSau Berry Preveraison Stage 32 (PREu0032) Vitis vinifera cDNA clone CSECS066F03 3', mRNA sequence.    44  1.1  1
CA811270|CA811270.1 CA22LI06IIR-F4 Cabernet Sauvignon Leaf - CA22LI Vitis vinifera cDNA clone CA22LI06IIR-F4 3', mRNA sequence.    44  1.1  1
AF091746|AF091746.1 Homo sapiens exonuclease I (EXOI) gene, exon 6.    44  1.1  1
CF100313|CF100313.1 rv41g12.y1 Heterodera schachtii J2 pAMP1 v1 Heterodera schachtii cDNA 5', mRNA sequence.    44  1.1  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT057724_1(BT057724|pid:none) Salmo salar clone ssal-evf-539-015...    85   9e-16
BT073335_1(BT073335|pid:none) Oncorhynchus mykiss clone omyk-evn...    85   9e-16
BT056618_1(BT056618|pid:none) Salmo salar clone ssal-evf-553-337...    83   3e-15
BT056690_1(BT056690|pid:none) Salmo salar clone ssal-eve-542-050...    82   5e-15
BC049031_1(BC049031|pid:none) Danio rerio zgc:56493, mRNA (cDNA ...    82   6e-15
AY036906_1(AY036906|pid:none) Vitis labrusca Hsp70 interacting p...    82   8e-15
BT075547_1(BT075547|pid:none) Osmerus mordax clone omor-eva-004-...    79   4e-14
BT009704_1(BT009704|pid:none) Arabidopsis thaliana At3g17880 gen...    78   1e-13
CR954217_167(CR954217|pid:none) Ostreococcus tauri strain OTTH05...    78   1e-13
AB019230_10(AB019230|pid:none) Arabidopsis thaliana genomic DNA,...    78   1e-13

 psg: 0.75  gvh: 0.67  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VSA173 is mit

>VSA173E.Seq
ATTTACAAACAAGACTAAATGTACAAAGAACCAAGAAACGAGAGTGAATACGAAGCTGAA
CTCAAATACGCTCCAGTCGCTGTTGTTTATCTCACTGCTACCTGGTGTGGCCCATGTCGT
GCTATCGCCCCAGTTTTCACCAACATTTCAAATGCACCAGAAAACAGCAAAATCACTTTT
TTCAAAGTTGATGTTGATGCCCTTAAAAAATTACCAGTTTGTGAATCACTCCAAGGTGTC
CCAACTTTCATTGCTTACAGAAATGGTGAAGAACAAGAAAGATTCTCTGGTGCCAATAAA
GTAGCCCTTGAAAATATGGTCAAAAAACTCTTATAAATAAATAATCTATAGAATTTGT