VSA165
Library VS
(Link to library)
Clone ID VSA165
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03807-1
Original site URL
Representative seq. ID VSA165E
(Link to Original site)
Representative DNA sequence
>VSA165 (VSA165Q) /CSM/VS/VSA1-C/VSA165Q.Seq.d/
ATTTACAAACAAGACAAAATGTACAAAGAACCAAAAAACGAGAGTGAATACGAAGCTGAA
CTCAAAAACGCTCCAGTCGCTGTTGTTTATCTCACTGCTACCTGGTGTGGCCCATGTCGT
GCTATCGCCCCAGTTTTCACCAACATTTCAAATGCACCAGAAAACAGCAAAATCACTTTT
TTCAAAGTTGATGTTGATGCCCTTAAAAAATTACCAGTTTGTGAATCACTCCAAGGTGTC
CCAACTTTCATTGCTTACAGAAATGGTGAAGAACAAGAAAGATTCTCTGGTGCCAATAAA
GTAGCCTTTGAAAATATGGTCAAAAAACTCTTATAAATAAATAATCTATAGAATTTGT
sequence update 2000. 2.29
Translated Amino Acid sequence
IYKQDKMYKEPKNESEYEAELKNAPVAVVYLTATWCGPCRAIAPVFTNISNAPENSKITF
FKVDVDALKKLPVCESLQGVPTFIAYRNGEEQERFSGANKVAFENMVKKLL*innl*nl


Translated Amino Acid sequence (All Frames)
Frame A:
IYKQDKMYKEPKNESEYEAELKNAPVAVVYLTATWCGPCRAIAPVFTNISNAPENSKITF
FKVDVDALKKLPVCESLQGVPTFIAYRNGEEQERFSGANKVAFENMVKKLL*innl*nl


Frame B:
ftnktkctknqktrvntklnsktlqsllfisllpgvahvvlspqfsptfqmhqktakslf
sklmlmplknyqfvnhskvsqlslltemvknkkdslvpik*plkiwsknsyk*iiyric


Frame C:
lqtrqnvqrtkkre*irs*tqkrssrcclshcylvwpmscyrpsfhqhfkctrkqqnhff
qs*c*cp*kitsl*itprcpnfhclqkw*rtrkilwcq*ssl*kygqktlink*sief


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSA165 (VSA165Q) /CSM/VS/VSA1-C/VSA165Q.Seq.d/ 710 0.0
VSJ526 (VSJ526Q) /CSM/VS/VSJ5-B/VSJ526Q.Seq.d/ 694 0.0
VFG868 (VFG868Q) /CSM/VF/VFG8-C/VFG868Q.Seq.d/ 694 0.0
VSJ701 (VSJ701Q) /CSM/VS/VSJ7-A/VSJ701Q.Seq.d/ 682 0.0
VSG588 (VSG588Q) /CSM/VS/VSG5-D/VSG588Q.Seq.d/ 682 0.0
VSF416 (VSF416Q) /CSM/VS/VSF4-A/VSF416Q.Seq.d/ 678 0.0
VSA173 (VSA173Q) /CSM/VS/VSA1-D/VSA173Q.Seq.d/ 678 0.0
VSF262 (VSF262Q) /CSM/VS/VSF2-C/VSF262Q.Seq.d/ 676 0.0
VSB571 (VSB571Q) /CSM/VS/VSB5-C/VSB571Q.Seq.d/ 670 0.0
VSC387 (VSC387Q) /CSM/VS/VSC3-D/VSC387Q.Seq.d/ 662 0.0

own update 2001.11.21
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BQ507669|BQ507669.2 EST615084 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGR77 3' end, mRNA sequence. 32 0.069 3
BG598337|BG598337.1 EST497015 cSTS Solanum tuberosum cDNA clone cSTS20D12 5' sequence, mRNA sequence. 32 0.070 3
BQ507668|BQ507668.1 EST615083 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGR77 5' end, mRNA sequence. 32 0.074 3
BX470070|BX470070.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-194B21. 46 0.29 1
CC972321|CC972321.1 ZUAFP34TV ZM_3.0_4.0_KB Zea mays genomic clone ZMMBPa0053E20, genomic survey sequence. 46 0.29 1
AC139850|AC139850.1 Homo sapiens BAC clone RP13-25D5 from 2, complete sequence. 38 0.34 5
CF404628|CF404628.1 CSECS066F03_PREu0032 CabSau Berry Preveraison Stage 32 (PREu0032) Vitis vinifera cDNA clone CSECS066F03 3', mRNA sequence. 44 1.1 1
CA811270|CA811270.1 CA22LI06IIR-F4 Cabernet Sauvignon Leaf - CA22LI Vitis vinifera cDNA clone CA22LI06IIR-F4 3', mRNA sequence. 44 1.1 1
AL929053|AL929053.5 Zebrafish DNA sequence from clone DKEY-21N12 in linkage group 20. 44 1.1 1
AF091746|AF091746.1 Homo sapiens exonuclease I (EXOI) gene, exon 6. 44 1.1 1
dna update 2003. 9.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BT057724_1(BT057724|pid:none) Salmo salar clone ssal-evf-539-015... 83 3e-15
BT073335_1(BT073335|pid:none) Oncorhynchus mykiss clone omyk-evn... 83 3e-15
BT056618_1(BT056618|pid:none) Salmo salar clone ssal-evf-553-337... 81 1e-14
AY036906_1(AY036906|pid:none) Vitis labrusca Hsp70 interacting p... 81 1e-14
BT056690_1(BT056690|pid:none) Salmo salar clone ssal-eve-542-050... 81 1e-14
BC049031_1(BC049031|pid:none) Danio rerio zgc:56493, mRNA (cDNA ... 80 2e-14
BT075547_1(BT075547|pid:none) Osmerus mordax clone omor-eva-004-... 79 7e-14
CR954217_167(CR954217|pid:none) Ostreococcus tauri strain OTTH05... 77 1e-13
BT082484_1(BT082484|pid:none) Anoplopoma fimbria clone afim-evh-... 77 2e-13
(Q9DGI3) RecName: Full=Thioredoxin; Short=Trx; &AF2936... 77 2e-13
protein update 2009. 7.22
PSORT

psg: 0.36 gvh: 0.67 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall

>> prediction for VSA165 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSA165E
Full length Seq.
>VSA165E.Seq
ATTTACAAACAAGACAAAATGTACAAAGAACCAAAAAACGAGAGTGAATACGAAGCTGAA
CTCAAAAACGCTCCAGTCGCTGTTGTTTATCTCACTGCTACCTGGTGTGGCCCATGTCGT
GCTATCGCCCCAGTTTTCACCAACATTTCAAATGCACCAGAAAACAGCAAAATCACTTTT
TTCAAAGTTGATGTTGATGCCCTTAAAAAATTACCAGTTTGTGAATCACTCCAAGGTGTC
CCAACTTTCATTGCTTACAGAAATGGTGAAGAACAAGAAAGATTCTCTGGTGCCAATAAA
GTAGCCTTTGAAAATATGGTCAAAAAACTCTTATAAATAAATAATCTATAGAATTTGT
Length of full length seq. 358