>VSA155 (VSA155Q) /CSM/VS/VSA1-C/VSA155Q.Seq.d/
XXXXXXXXXXTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAAT
TCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATT
ATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATT
CAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATC
AAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATC
CAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTG
GTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGA
ATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAA
ATCAATAAAGCTTCTCATATATAGTACACATTAATATTTTTATTTTTGAA

---RLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDS
DKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGG
MSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*sfsyivhinifife

Frame A:
---RLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDS
DKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGG
MSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*sfsyivhinifife


Frame B:
---vfqkkklkkwllmqrnsnnkmnnkkivlnqrinwkimhsllkiqlkmkklqpkfqiq
inqllnlklkvysng*nqikpqkrmnmkir*kp*kqlsiqs*vnsikkevchkvvvcqvv
cqmihqrvqttk*tn*idgifqrktslsnrflkk**vskinkashi*ytliflfl


Frame C:
---sfkrrn*kngc*creiqttr*ttkrsc*ike*igklcihc*kfn*r*kscsqnfrfr
*iny*i*n*kctqmvriksnrrkg*i*r*deslrsscqsnhe*tlsrrryatrwwyarwy
vk*ftkefkqqsrrirlteffrgkhlyqidflknnklvksiklliysth*yfyf*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA155 (VSA155Q) /CSM/VS/VSA1-C/VSA155Q.Seq.d/                       1031   0.0
CHM137 (CHM137Q) /CSM/CH/CHM1-B/CHM137Q.Seq.d/                       1031   0.0
CHL456 (CHL456Q) /CSM/CH/CHL4-C/CHL456Q.Seq.d/                       1031   0.0
VHP266 (VHP266Q) /CSM/VH/VHP2-C/VHP266Q.Seq.d/                       1023   0.0
CHI235 (CHI235Q) /CSM/CH/CHI2-B/CHI235Q.Seq.d/                       1009   0.0
CHQ272 (CHQ272Q) /CSM/CH/CHQ2-C/CHQ272Q.Seq.d/                       1001   0.0
SSK478 (SSK478Q) /CSM/SS/SSK4-D/SSK478Q.Seq.d/                        999   0.0
SSJ888 (SSJ888Q) /CSM/SS/SSJ8-D/SSJ888Q.Seq.d/                        999   0.0
SSE694 (SSE694Q) /CSM/SS/SSE6-D/SSE694Q.Seq.d/                        999   0.0
SLI245 (SLI245Q) /CSM/SL/SLI2-B/SLI245Q.Seq.d/                        999   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).   999  0.0  1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.   995  0.0  1
AU281126|AU281126.1 Molgula tectiformis mRNA, clone:MT17A2E07T, 3' end.    56  4e-06  2
AJ310880|AJ310880.1 Cryptosporidium baileyi partial hsp70 gene for heat shock protein  70.    44  6e-06  2
AF221539|AF221539.1 Cryptosporidium baileyi heat shock protein 70 (HSP70) gene, partial cds.    44  6e-06  2
AU282860|AU282860.1 Molgula tectiformis mRNA, clone:MT06B2C04T, 3' end.    56  6e-06  2
AX536934|AX536934.1 Sequence 535 from Patent WO02064766.          50  0.001  2
A58313|A58313.1 Sequence 1 from Patent WO9636707.                 50  0.001  2
Z30210|Z30210.1 C.albicans (ATCC 20955) cahsp70 mRNA for heat shock protein 70.    50  0.001  2
BM162567|BM162567.1 EST565090 PyBS Plasmodium yoelii yoelii cDNA clone PYCKU24 5' end, mRNA sequence.    36  0.002  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   201   7e-51
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   201   7e-51
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3;           125   7e-28
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s...   122   4e-27
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803...   120   2e-26
(P24629) RecName: Full=Heat shock cognate 70 kDa protein 1;  &FB...   120   2e-26
AY253326_1(AY253326|pid:none) Nicotiana tabacum heat shock prote...   119   6e-26
(P22953) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   118   1e-25
AC147536_23(AC147536|pid:none) Medicago truncatula clone mth2-9l...   118   1e-25
AY830127_1(AY830127|pid:none) Medicago sativa heat shock protein...   118   1e-25

 psg: 0.62  gvh: 0.08  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for VSA155 is nuc

>VSA155Z.Seq
----------TCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAAT
TCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATT
ATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATT
CAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATC
AAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATC
CAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTG
GTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGA
ATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAA
ATCAATAAAGCTTCTCATATATAGTACACATTAATATTTTTATTTTTGAA