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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSA138
Library VS
(Link to library)
Clone ID VSA138
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15185-1
Original site URL
Representative seq. ID VSA138E
(Link to Original site)
Representative DNA sequence 
>VSA138 (VSA138Q) /CSM/VS/VSA1-B/VSA138Q.Seq.d/
AAAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTA
AGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGT
GGTAAAGATGCCGTCAGACGTGCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAA
GTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACT
ATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAAAATAAATCAG
GACCAATATACACTGGTTTTAAAAAATAAAAA
sequence update 2000. 1.24
Translated Amino Acid sequence 
KRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRASVGIWKCNGCRK
VLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytlvlknk
Translated Amino Acid sequence (All Frames) 
Frame A:
KRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRASVGIWKCNGCRK
VLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytlvlknk


Frame B:
keqrkselsvntvpdmvll*esklkrwkspntvptpvhsvvkmpsdvhplvsgnvtvavk
f*lvvlglcqlplvplldqlsdvses*itkpfiyeik*irtnihwf*kik


Frame C:
knkesrscr*iryqiwcffkkas*kdgnhptrylhlfilw*rcrqtcirwylem*rlp*s
fswwcldyvncrwchc*inyqtsqrvk*lnhlymk*nksgpiytgfkk*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA138 (VSA138Q) /CSM/VS/VSA1-B/VSA138Q.Seq.d/                        634   0.0
VSI473 (VSI473Q) /CSM/VS/VSI4-D/VSI473Q.Seq.d/                        626   e-179
VSI440 (VSI440Q) /CSM/VS/VSI4-B/VSI440Q.Seq.d/                        626   e-179
VSI243 (VSI243Q) /CSM/VS/VSI2-B/VSI243Q.Seq.d/                        626   e-179
VSH888 (VSH888Q) /CSM/VS/VSH8-D/VSH888Q.Seq.d/                        626   e-179
VSH330 (VSH330Q) /CSM/VS/VSH3-B/VSH330Q.Seq.d/                        626   e-179
VSG249 (VSG249Q) /CSM/VS/VSG2-C/VSG249Q.Seq.d/                        626   e-179
VSF596 (VSF596Q) /CSM/VS/VSF5-D/VSF596Q.Seq.d/                        626   e-179
VSF225 (VSF225Q) /CSM/VS/VSF2-B/VSF225Q.Seq.d/                        626   e-179
VSE566 (VSE566Q) /CSM/VS/VSE5-C/VSE566Q.Seq.d/                        626   e-179
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL116011|AL116011.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  3e-15  2
AL116009|AL116009.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  3e-15  2
AL115603|AL115603.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  3e-15  2
AL112083|AL112083.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  3e-15  2
AL112069|AL112069.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  3e-15  2
AL111042|AL111042.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  4e-15  2
AL114982|AL114982.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    80  9e-14  2
AL110769|AL110769.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  2e-13  2
BI742435|BI742435.1 kt50h12.y4 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:R37A_OSTOS O61598 60S RIBOSOMAL PROTEIN L37A. ;contains element MER8 repetitive element ;, mRNA sequence.    42  1e-11  4
BI323490|BI323490.1 kt71h07.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:R37A_OSTOS O61598 60S RIBOSOMAL PROTEIN L37A. ;, mRNA sequence.    42  1e-11  4
dna update 2003. 9.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UG4) RecName: Full=60S ribosomal protein L37a;  &JE0321(JE03...   179   2e-44
(O61462) RecName: Full=60S ribosomal protein L37a;  &AF040712_1(...   145   6e-34
A63921_1(A63921|pid:none) Sequence 46 from Patent WO9723633.  &C...   144   1e-33
EZ000381_1(EZ000381|pid:none) TSA: Culex tarsalis Ctar-19 60S ri...   143   2e-33
EU125030_1(EU125030|pid:none) Eurythoe complanata ribosomal prot...   143   2e-33
(O61598) RecName: Full=60S ribosomal protein L37a;  &AF052737_1(...   142   3e-33
(Q9VMU4) RecName: Full=60S ribosomal protein L37a;  &AE014134_91...   142   4e-33
EU116912_1(EU116912|pid:none) Barentsia elongata putative riboso...   141   6e-33
AF363029_1(AF363029|pid:none) Branchiostoma belcheri 60S ribosom...   141   6e-33
AY349162_1(AY349162|pid:none) Toxoplasma gondii N1 mRNA, complet...   141   8e-33
protein update 2009. 7.22
PSORT 

 psg: 0.67  gvh: 0.37  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VSA138 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSA138E
Full length Seq. 
>VSA138E.Seq
AAAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTA
AGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGT
GGTAAAGATGCCGTCAGACGTGCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAA
GTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACT
ATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAAAATAAATCAG
GACCAATATACACTGGTTTTAAAAAATAAAAA
Length of full length seq. 332