>VSA137 (VSA137Q) /CSM/VS/VSA1-B/VSA137Q.Seq.d/
XXXXXXXXXXTTTACTATAATAATTATAATAATAATATATAACAAGAATATCAAATTTAT
TGTTATAATTAATTTTATTTTATTTTGTCAAATTTTCAATTTATTTTAAAAAGCAATTCA
CTTTTTTAGACCAACAATTACAAACAATCATTAATCAAGTCATTACGATGGCAGCCCTCA
TATTGAGAACCCTTTTAGATAACAACGTTTTTAGTAGTAGTGACTACATACATACGATAA
AAGACCCACTTTCAACTAGTATGGTCGAAGTTTCAGGAAATCCACAATCTTGTGGTGTTT
CAGAAGCATTTTCTTCACCATCATTGAAGAAAGCTGATGTTTCACTTACTTTTGGCTCCA
GTCAAGAAATCTCCTATGCCGCAATGTCGGCCCCATTAAATGCCGAGTTCGTAAGATTTG
CTATCAAGCACAAGTCGTATTCCTGATGAAATTGCCCCCACTGATGTCAACAAAACCGAA
CTGGATTTATCCACCAACAACTTTGGAGTACCATTGGCTGATGTTGTTCTTCCTTCTTCC
TCCTCAACAACATTATCACCATCAATCGTTTCAGAACAACAACAACAAACAACTCCAACA
ACAACTAAAAAAAAAAAATTTAAAAAAAAAAAAAA

---ll**l***yitrisnlll*LILFYFVKFSIYFKKQFTFLDQQLQTIINQVITMAALI
LRTLLDNNVFSSSDYIHTIKDPLSTSMVEVSGNPQSCGVSEAFSSPSLKKADVSLTFGSS
QEISYAAMSAPLNAEFVRFAIKHKSYS**ncph*cqqnrtgfihqqlwstig*ccssffl
lnniitinrfrttttnnsnnn*kkki*kkkk

Frame A:
---ll**l***yitrisnlll*LILFYFVKFSIYFKKQFTFLDQQLQTIINQVITMAALI
LRTLLDNNVFSSSDYIHTIKDPLSTSMVEVSGNPQSCGVSEAFSSPSLKKADVSLTFGSS
QEISYAAMSAPLNAEFVRFAIKHKSYS**ncph*cqqnrtgfihqqlwstig*ccssffl
lnniitinrfrttttnnsnnn*kkki*kkkk


Frame B:
---yynnynnni*qeyqiycyn*fyfilsnfqfilksnslf*tnnykqslikslrwqpsy
*epf*ittflvvvttyir*kthfqlvwskfqeihnlvvfqkhflhhh*rklmfhlllapv
kkspmpqcrph*mpss*dllsstsripdeiaptdvnkteldlstnnfgvpladvvlpsss
sttlspsivseqqqqttptttkkkkfkkkk


Frame C:
---tiiiiiiiynknikfiviinfilfcqifnlf*kaihffrptitnnh*sshydgsphi
enpfr*qrf****lhtydkrptfn*ygrsfrkstilwcfrsifftiiees*cftyfwlqs
rnllcrnvgpikcrvrkicyqaqvvflmklpplmstkpnwiyppttleyhwlmlffllpp
qqhyhhqsfqnnnnkqlqqqlkkknlkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA137 (VSA137Q) /CSM/VS/VSA1-B/VSA137Q.Seq.d/                        884   0.0
VFJ568 (VFJ568Q) /CSM/VF/VFJ5-C/VFJ568Q.Seq.d/                        884   0.0
SLH703 (SLH703Q) /CSM/SL/SLH7-A/SLH703Q.Seq.d/                        884   0.0
CHD574 (CHD574Q) /CSM/CH/CHD5-D/CHD574Q.Seq.d/                        884   0.0
CFJ617 (CFJ617Q) /CSM/CF/CFJ6-A/CFJ617Q.Seq.d/                        876   0.0
SLB421 (SLB421Q) /CSM/SL/SLB4-A/SLB421Q.Seq.d/                         38   0.16
CFF643 (CFF643Q) /CSM/CF/CFF6-B/CFF643Q.Seq.d/                         36   0.63
AFO130 (AFO130Q) /CSM/AF/AFO1-B/AFO130Q.Seq.d/                         36   0.63
VFI601 (VFI601Q) /CSM/VF/VFI6-A/VFI601Q.Seq.d/                         34   2.5
SSF308 (SSF308Q) /CSM/SS/SSF3-A/SSF308Q.Seq.d/                         34   2.5

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC144608|AC144608.8 Medicago truncatula clone mth2-23d2, WORKING DRAFT SEQUENCE.    34  1.6  3
BG893872|BG893872.1 kt16f07.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:YLA4_CAEEL Q05036 HYPOTHETICAL 86.9 KD PROTEIN C30C11.4 IN CHROMOSOME III. [1] ;, mRNA sequence.    44  2.1  1
BH576568|BH576568.1 BOHFR83TF BOHF Brassica oleracea genomic clone BOHFR83, DNA sequence.    44  2.1  1
CD526078|CD526078.1 kw30c06.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:YLA4_CAEEL Q05036 HYPOTHETICAL 86.9 KD PROTEIN C30C11.4 IN CHROMOSOME III. [1] ;, mRNA sequence.    44  2.1  1
CD526112|CD526112.1 kw30g04.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:YLA4_CAEEL Q05036 HYPOTHETICAL 86.9 KD PROTEIN C30C11.4 IN CHROMOSOME III. [1] ;, mRNA sequence.    44  2.1  1
AC128058|AC128058.3 Rattus norvegicus clone CH230-19O24, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44  2.1  1
BI916031|BI916031.1 603184459F1 NIH_MGC_121 Homo sapiens cDNA clone IMAGE:5248502 5', mRNA sequence.    44  2.1  1
BM171470|BM171470.1 EST573993 PyBS Plasmodium yoelii yoelii cDNA clone PYCQV13 5' end, mRNA sequence.    32  6.5  2
AC094357|AC094357.6 Rattus norvegicus clone CH230-3C14, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  6.8  2
BM165184|BM165184.1 EST567707 PyBS Plasmodium yoelii yoelii cDNA clone PYCMI58 5' end, mRNA sequence.    32  6.9  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54R69) RecName: Full=Uncharacterized protein DDB_G0283377;          154   2e-50
(P52687) RecName: Full=Sensor kinase citA;          EC=2.7.13.3;...    34   4.0
BX571965_2015(BX571965|pid:none) Burkholderia pseudomallei strai...    33   9.0
CP000124_1804(CP000124|pid:none) Burkholderia pseudomallei 1710b...    33   9.0
CP000572_1657(CP000572|pid:none) Burkholderia pseudomallei 1106a...    33   9.0

 psg: 0.64  gvh: 0.56  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: peroxisomal
	  4.0 %: cytoskeletal

>> prediction for VSA137 is nuc

>VSA137Z.Seq
----------TTTACTATAATAATTATAATAATAATATATAACAAGAATATCAAATTTAT
TGTTATAATTAATTTTATTTTATTTTGTCAAATTTTCAATTTATTTTAAAAAGCAATTCA
CTTTTTTAGACCAACAATTACAAACAATCATTAATCAAGTCATTACGATGGCAGCCCTCA
TATTGAGAACCCTTTTAGATAACAACGTTTTTAGTAGTAGTGACTACATACATACGATAA
AAGACCCACTTTCAACTAGTATGGTCGAAGTTTCAGGAAATCCACAATCTTGTGGTGTTT
CAGAAGCATTTTCTTCACCATCATTGAAGAAAGCTGATGTTTCACTTACTTTTGGCTCCA
GTCAAGAAATCTCCTATGCCGCAATGTCGGCCCCATTAAATGCCGAGTTCGTAAGATTTG
CTATCAAGCACAAGTCGTATTCCTGATGAAATTGCCCCCACTGATGTCAACAAAACCGAA
CTGGATTTATCCACCAACAACTTTGGAGTACCATTGGCTGATGTTGTTCTTCCTTCTTCC
TCCTCAACAACATTATCACCATCAATCGTTTCAGAACAACAACAACAAACAACTCCAACA
ACAACTAAAAAAAAAAAATTTAAAAAAAAAAAAAA