>VSA116 (VSA116Q) /CSM/VS/VSA1-A/VSA116Q.Seq.d/
CAAAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAATAAAAA
AGTAAACAAAAAATAAAATTAATTATTATTAAATAAATA

KKTKTKTKTKTKTKTKTNKKVNKK*n*lllnk

Frame A:
qknknknknknknknknk*kskqkikliiik*i


Frame B:
KKTKTKTKTKTKTKTKTNKKVNKK*n*lllnk


Frame C:
kkqkqkqkqkqkqkqkqikk*tknkinyy*in

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ631 (VSJ631Q) /CSM/VS/VSJ6-B/VSJ631Q.Seq.d/                         42   0.001
VSI531 (VSI531Q) /CSM/VS/VSI5-B/VSI531Q.Seq.d/                         42   0.001
VSI508 (VSI508Q) /CSM/VS/VSI5-A/VSI508Q.Seq.d/                         42   0.001
VSA116 (VSA116Q) /CSM/VS/VSA1-A/VSA116Q.Seq.d/                         42   0.001
CHR590 (CHR590Q) /CSM/CH/CHR5-D/CHR590Q.Seq.d/                         42   0.001
SLD158 (SLD158Q) /CSM/SL/SLD1-C/SLD158Q.Seq.d/                         40   0.005
SSM426 (SSM426Q) /CSM/SS/SSM4-B/SSM426Q.Seq.d/                         36   0.083
SSE692 (SSE692Q) /CSM/SS/SSE6-D/SSE692Q.Seq.d/                         36   0.083
VSE570 (VSE570Q) /CSM/VS/VSE5-C/VSE570Q.Seq.d/                         34   0.33
SSJ169 (SSJ169Q) /CSM/SS/SSJ1-C/SSJ169Q.Seq.d/                         34   0.33

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC025748|AC025748.3 Homo sapiens chromosome 12 clone RP11-743I10, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42  1.0  1
AC069489|AC069489.2 Homo sapiens chromosome 5 clone CTD-2016H11 map 5, WORKING DRAFT SEQUENCE, 27 unordered pieces.    42  1.0  1
AC074297|AC074297.3 Homo sapiens chromosome 12 clone RP11-731D10, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42  1.0  1
AP002016|AP002016.2 Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2016H11, WORKING DRAFT SEQUENCE, unordered pieces.    42  1.0  1
AC112169|AC112169.2 Homo sapiens chromosome 5 clone CTD-2016H11, complete sequence.    42  1.0  1
AC116955|AC116955.2 Dictyostelium discoideum chromosome 2 map 5455881-5481449 strain AX4, complete sequence.    42  1.0  1
AC015736|AC015736.2 Homo sapiens clone RP11-1D13, LOW-PASS SEQUENCE SAMPLING.    42  1.0  1
AC139251|AC139251.1 Homo sapiens chromosome 16 clone ICI-39HD10, WORKING DRAFT SEQUENCE, 172 unordered pieces.    42  1.0  1
CD256749|CD256749.1 AGENCOURT_14159523 NICHD_XGC_Brn1 Xenopus laevis cDNA clone IMAGE:6951793 5', mRNA sequence.    42  1.0  1
AC090108|AC090108.15 Homo sapiens 12q BAC RP11-395D5 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    42  1.0  1

 ***** No hits found ******

Lambda     K      H
   0.290   0.0936    0.205

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,794,705

 psg: 0.48  gvh: -0.11  alm: 0.93  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.00
 nuc: 0.49  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for VSA116 is nuc

>VSA116E.Seq
CAAAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAATAAAAA
AGTAAACAAAAAATAAAATTAATTATTATTAAATAAATA