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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHQ389
Library VH
(Link to library)
Clone ID VHQ389
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15036-1
Original site URL
Representative seq. ID VHQ389P
(Link to Original site)
Representative DNA sequence 
>VHQ389 (VHQ389Q) /CSM/VH/VHQ3-D/VHQ389Q.Seq.d/
CTCAAACTAGACATATTGCAACTTTATCATTTGAAGCTTTAGAAAGAGCTTGGCAATCAC
TTGATGTAACTTTAGTTGATTTTAAAGTTGAATTTGGTATTACATCACAAGGTGAATTAA
TTTTAGCAGATGTTATTGATAATGATTCATGGAGAATTTGGCCAAAAGGTGATAAAACAT
TAATGAAAGATAAACAAGTTTATCGTAATCTTCCATCTGCACTCAATACACCAGGTGCAA
CACCAACAACACAATCTGGTCCATTACTTAATACTTTATTCAGATCAACAATTAAAAATG
ATTGAAGATAATTATGCTTGGGTTGCAACTTCCACTGAAAAATTAGTTGAATTCACTGCT
GCAAATTTAAATAATAATAATAATAATAATAATAATAATAGTAATAATAATAATAATAAT
ACAAGTTCTACATCAAGATCAAATAGTTTACCAAATGTACCATCAATAACTACAACACCA
ACTCTTCACCATCATCATCATCATCATCAACAACAACAAAGTGGTGTTGGTAATAATAAT
AATGTTAATTCAGGATTTCAAGTTCAATTAAATCAACCATTAGTTGGAATTATTATGGGT
XXXXXXXXXXTNTTAAATCAAATACTATGGGTTATGATGGTAAAGGTCAAGTTAAATTAA
CCGATCAAGTCGATNTTGAACAAGCTTGGAAAAAGGTTACCTNTGAAACTTGTGCAACCA
AAGCAATACTTGAACAATATATAGAGCTTGAATCAGAAGCATCAGTTATTGTAGCACGTG
CTTTAGATGGAACAGAGTTAACCTTCCCATTGGTTACCAATAAACATCGTAATCATATTT
TACGTCAAACCATTGCACCAGCTCAATTGCCAGAATATATTCATAAACAAGCCAATGAAA
TTGGTTTAAAGATTGCTCGTTCCAATGGTTTGGTTGGTATTATTGCCGTCGAATTATTTG
TAGTGAAAAACAATGAAACAGGTCAATACTCTTTAATGGTAAATGAATTGGCACCAAGAC
CACACAATAGTGGTCATTGGACCATCGAAGGTTGTGTAACCTNTCAATTTGAACAATTGA
TTCGTTGTGTTTGTGGTTTGCCTTTGGGTTCAGTCGATTTCACTAAACGTATAAGTGAAG
CTGAATTTATTCAACAACAAATTCCACCAATTGTAATGACAAATCTTTTAGGTCAAGAAG
TTAACGGTTGGGAAAAAATACTTCAAACTAAAGGTTCACATCTTCATATCTATGCTAAAG
GTGATGCAAAAGAAGGTCGTAAAATGGGTCATGTTACTCAACAATAAAAAAAAAATTAAA
AAAAATAAAAATAAAATTTAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
lkldilqlyhlkl*kelgnhlm*l*lilklnlvlhhkvn*f*qmllimihgefgqkvikh
**KINKFIVIFHLHSIHQVQHQQHNLVHYLILYSDQQLKMIEDNYAWVATSTEKLVEFTA
ANLNNNNNNNNNNSNNNNNNTSSTSRSNSLPNVPSITTTPTLHHHHHHHQQQQSGVGNNN
NVNSGFQVQLNQPLVGIIMG---

---XKSNTMGYDGKGQVKLTDQVDXEQAWKKVTXETCATKAILEQYIELESEASVIVARA
LDGTELTFPLVTNKHRNHILRQTIAPAQLPEYIHKQANEIGLKIARSNGLVGIIAVELFV
VKNNETGQYSLMVNELAPRPHNSGHWTIEGCVTXQFEQLIRCVCGLPLGSVDFTKRISEA
EFIQQQIPPIVMTNLLGQEVNGWEKILQTKGSHLHIYAKGDAKEGRKMGHVTQQ*kkn*k
k*k*nlk
Translated Amino Acid sequence (All Frames) 
Frame A:
lkldilqlyhlkl*kelgnhlm*l*lilklnlvlhhkvn*f*qmllimihgefgqkvikh
**KINKFIVIFHLHSIHQVQHQQHNLVHYLILYSDQQLKMIEDNYAWVATSTEKLVEFTA
ANLNNNNNNNNNNSNNNNNNTSSTSRSNSLPNVPSITTTPTLHHHHHHHQQQQSGVGNNN
NVNSGFQVQLNQPLVGIIMG---

---x*ikyygl*w*rss*inrssrx*tslekgyl*nlcnqsnt*tiyra*irsisycstc
frwnrvnlpigyq*ts*syftsnhctssiariys*tsq*nwfkdcsfqwfgwyycrriic
sekq*nrsilfngk*igtkttq*wsldhrrlcnlsi*tidslclwfafgfsrfh*tyk*s
*iysttnstncndksfrsrs*rlgkntsn*rftssylc*r*ckrrs*ngscystikkklk
kikikfk

Frame B:
sn*tycnfii*sfrkslait*cnfs*f*s*iwyyitr*infsrcy***fmenlakr**ni
ner*tsls*ssictqytrcntnntiwsit*yfiqinn*k*lkiimlglqlplkn*lnsll
qi*iiiiiiiiiiviiiiiiqvlhqdqivyqmyhq*lqhqlftiiiiiinnnkvvlviii
mliqdfkfn*inh*lellw---

---XKSNTMGYDGKGQVKLTDQVDXEQAWKKVTXETCATKAILEQYIELESEASVIVARA
LDGTELTFPLVTNKHRNHILRQTIAPAQLPEYIHKQANEIGLKIARSNGLVGIIAVELFV
VKNNETGQYSLMVNELAPRPHNSGHWTIEGCVTXQFEQLIRCVCGLPLGSVDFTKRISEA
EFIQQQIPPIVMTNLLGQEVNGWEKILQTKGSHLHIYAKGDAKEGRKMGHVTQQ*kkn*k
k*k*nlk

Frame C:
qtrhiatlsfealerawqsldvtlvdfkvefgitsqgeliladvidndswriwpkgdktl
mkdkqvyrnlpsalntpgatpttqsgpllntlfrstiknd*r*lclgcnfh*kis*ihcc
kfk****************ykfyikik*ftkctinnyntnsspsssssstttkwcw****
c*frisssikstiswnyyg---

---lnqilwvmmvkvkln*piksxlnklgkrlpxklvqpkqylnni*slnqkhqll*hvl
*meqs*pshwlpiniviifyvkplhqlncqnifinkpmklv*rllvpmvwlvllpsnyl*
*ktmkqvntl*w*mnwhqdhtivvigpskvv*pxnlnn*fvvfvvclwvqsislnv*vkl
nlfnnkfhql**qif*vkkltvgkkyfklkvhifismlkvmqkkvvkwvmllnnkkkikk
nknki*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ389 (VHQ389Q) /CSM/VH/VHQ3-D/VHQ389Q.Seq.d/                       1495   0.0
VHN643 (VHN643Q) /CSM/VH/VHN6-B/VHN643Q.Seq.d/                       1348   0.0
VHB561 (VHB561Q) /CSM/VH/VHB5-C/VHB561Q.Seq.d/                       1348   0.0
SSK605 (SSK605Q) /CSM/SS/SSK6-A/SSK605Q.Seq.d/                       1324   0.0
SFB103 (SFB103Q) /CSM/SF/SFB1-A/SFB103Q.Seq.d/                       1298   0.0
VHH651 (VHH651Q) /CSM/VH/VHH6-C/VHH651Q.Seq.d/                       1253   0.0
SFL170 (SFL170Q) /CSM/SF/SFL1-C/SFL170Q.Seq.d/                       1247   0.0
SFE842 (SFE842Q) /CSM/SF/SFE8-B/SFE842Q.Seq.d/                       1243   0.0
VFO656 (VFO656Q) /CSM/VF/VFO6-C/VFO656Q.Seq.d/                       1160   0.0
CHS229 (CHS229Q) /CSM/CH/CHS2-B/CHS229Q.Seq.d/                       1100   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446759) Dictyostelium discoideum cDNA clone:ddv63b23, 3' ...  1356   0.0    1
(BJ445055) Dictyostelium discoideum cDNA clone:ddv58e12, 3' ...  1348   0.0    1
(BJ437546) Dictyostelium discoideum cDNA clone:ddv34i15, 3' ...  1348   0.0    1
(BJ441382) Dictyostelium discoideum cDNA clone:ddv46e14, 3' ...  1253   0.0    1
(BJ397937) Dictyostelium discoideum cDNA clone:dds10d12, 3' ...  1239   0.0    1
(BJ436290) Dictyostelium discoideum cDNA clone:ddv30o14, 3' ...  1160   0.0    1
(BJ398905) Dictyostelium discoideum cDNA clone:dds3e01, 3' e...  1130   0.0    1
(BJ409205) Dictyostelium discoideum cDNA clone:dds39n23, 3' ...  1065   0.0    1
(BJ386469) Dictyostelium discoideum cDNA clone:ddc58i08, 3' ...  1015   0.0    2
(BJ401548) Dictyostelium discoideum cDNA clone:dds23k17, 3' ...   688   0.0    2
dna update 2008.12.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050060_1(AM050060|pid:none) Azospirillum brasilense partial pu...   196   2e-48
CP000699_3106(CP000699|pid:none) Sphingomonas wittichii RW1, com...   181   5e-44
CU234118_1139(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl...   179   2e-43
CP000943_2544(CP000943|pid:none) Methylobacterium sp. 4-46, comp...   179   3e-43
AP009384_2414(AP009384|pid:none) Azorhizobium caulinodans ORS 57...   177   6e-43
CP000774_2062(CP000774|pid:none) Parvibaculum lavamentivorans DS...   177   6e-43
CP000319_1161(CP000319|pid:none) Nitrobacter hamburgensis X14, c...   174   5e-42
AL009126_674(AL009126|pid:none) Bacillus subtilis subsp. subtili...   174   9e-42
BX572606_164(BX572606|pid:none) Rhodopseudomonas palustris CGA00...   174   9e-42
CP000463_4055(CP000463|pid:none) Rhodopseudomonas palustris BisA...   171   4e-41
protein update 2009. 7.22
PSORT 

 psg: 0.89  gvh: 0.48  alm: 0.35  top: 0.50  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHQ389 is cyt
5' end seq. ID VHQ389F
5' end seq. 
>VHQ389F.Seq
CTCAAACTAGACATATTGCAACTTTATCATTTGAAGCTTTAGAAAGAGCTTGGCAATCAC
TTGATGTAACTTTAGTTGATTTTAAAGTTGAATTTGGTATTACATCACAAGGTGAATTAA
TTTTAGCAGATGTTATTGATAATGATTCATGGAGAATTTGGCCAAAAGGTGATAAAACAT
TAATGAAAGATAAACAAGTTTATCGTAATCTTCCATCTGCACTCAATACACCAGGTGCAA
CACCAACAACACAATCTGGTCCATTACTTAATACTTTATTCAGATCAACAATTAAAAATG
ATTGAAGATAATTATGCTTGGGTTGCAACTTCCACTGAAAAATTAGTTGAATTCACTGCT
GCAAATTTAAATAATAATAATAATAATAATAATAATAATAGTAATAATAATAATAATAAT
ACAAGTTCTACATCAAGATCAAATAGTTTACCAAATGTACCATCAATAACTACAACACCA
ACTCTTCACCATCATCATCATCATCATCAACAACAACAAAGTGGTGTTGGTAATAATAAT
AATGTTAATTCAGGATTTCAAGTTCAATTAAATCAACCATTAGTTGGAATTATTATGGGT
NNNNNNNNNN
Length of 5' end seq. 610
3' end seq. ID VHQ389Z
3' end seq. 
>VHQ389Z.Seq
NNNNNNNNNNTNTTAAATCAAATACTATGGGTTATGATGGTAAAGGTCAAGTTAAATTAA
CCGATCAAGTCGATNTTGAACAAGCTTGGAAAAAGGTTACCTNTGAAACTTGTGCAACCA
AAGCAATACTTGAACAATATATAGAGCTTGAATCAGAAGCATCAGTTATTGTAGCACGTG
CTTTAGATGGAACAGAGTTAACCTTCCCATTGGTTACCAATAAACATCGTAATCATATTT
TACGTCAAACCATTGCACCAGCTCAATTGCCAGAATATATTCATAAACAAGCCAATGAAA
TTGGTTTAAAGATTGCTCGTTCCAATGGTTTGGTTGGTATTATTGCCGTCGAATTATTTG
TAGTGAAAAACAATGAAACAGGTCAATACTCTTTAATGGTAAATGAATTGGCACCAAGAC
CACACAATAGTGGTCATTGGACCATCGAAGGTTGTGTAACCTNTCAATTTGAACAATTGA
TTCGTTGTGTTTGTGGTTTGCCTTTGGGTTCAGTCGATTTCACTAAACGTATAAGTGAAG
CTGAATTTATTCAACAACAAATTCCACCAATTGTAATGACAAATCTTTTAGGTCAAGAAG
TTAACGGTTGGGAAAAAATACTTCAAACTAAAGGTTCACATCTTCATATCTATGCTAAAG
GTGATGCAAAAGAAGGTCGTAAAATGGGTCATGTTACTCAACAATAAAAAAAAAATTAAA
AAAAATAAAAATAAAATTTAAAA
Length of 3' end seq. 743
Connected seq. ID VHQ389P
Connected seq. 
>VHQ389P.Seq
CTCAAACTAGACATATTGCAACTTTATCATTTGAAGCTTTAGAAAGAGCTTGGCAATCAC
TTGATGTAACTTTAGTTGATTTTAAAGTTGAATTTGGTATTACATCACAAGGTGAATTAA
TTTTAGCAGATGTTATTGATAATGATTCATGGAGAATTTGGCCAAAAGGTGATAAAACAT
TAATGAAAGATAAACAAGTTTATCGTAATCTTCCATCTGCACTCAATACACCAGGTGCAA
CACCAACAACACAATCTGGTCCATTACTTAATACTTTATTCAGATCAACAATTAAAAATG
ATTGAAGATAATTATGCTTGGGTTGCAACTTCCACTGAAAAATTAGTTGAATTCACTGCT
GCAAATTTAAATAATAATAATAATAATAATAATAATAATAGTAATAATAATAATAATAAT
ACAAGTTCTACATCAAGATCAAATAGTTTACCAAATGTACCATCAATAACTACAACACCA
ACTCTTCACCATCATCATCATCATCATCAACAACAACAAAGTGGTGTTGGTAATAATAAT
AATGTTAATTCAGGATTTCAAGTTCAATTAAATCAACCATTAGTTGGAATTATTATGGGT
----------TNTTAAATCAAATACTATGGGTTATGATGGTAAAGGTCAAGTTAAATTAA
CCGATCAAGTCGATNTTGAACAAGCTTGGAAAAAGGTTACCTNTGAAACTTGTGCAACCA
AAGCAATACTTGAACAATATATAGAGCTTGAATCAGAAGCATCAGTTATTGTAGCACGTG
CTTTAGATGGAACAGAGTTAACCTTCCCATTGGTTACCAATAAACATCGTAATCATATTT
TACGTCAAACCATTGCACCAGCTCAATTGCCAGAATATATTCATAAACAAGCCAATGAAA
TTGGTTTAAAGATTGCTCGTTCCAATGGTTTGGTTGGTATTATTGCCGTCGAATTATTTG
TAGTGAAAAACAATGAAACAGGTCAATACTCTTTAATGGTAAATGAATTGGCACCAAGAC
CACACAATAGTGGTCATTGGACCATCGAAGGTTGTGTAACCTNTCAATTTGAACAATTGA
TTCGTTGTGTTTGTGGTTTGCCTTTGGGTTCAGTCGATTTCACTAAACGTATAAGTGAAG
CTGAATTTATTCAACAACAAATTCCACCAATTGTAATGACAAATCTTTTAGGTCAAGAAG
TTAACGGTTGGGAAAAAATACTTCAAACTAAAGGTTCACATCTTCATATCTATGCTAAAG
GTGATGCAAAAGAAGGTCGTAAAATGGGTCATGTTACTCAACAATAAAAAAAAAATTAAA
AAAAATAAAAATAAAATTTAAAA
Length of connected seq. 1333
Full length Seq ID -
Full length Seq. -
Length of full length seq. -