VHQ354
Library VH
(Link to library)
Clone ID VHQ354
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10875-1|Contig-U11341-1
Original site URL
Representative seq. ID VHQ354P
(Link to Original site)
Representative DNA sequence
>VHQ354 (VHQ354Q) /CSM/VH/VHQ3-C/VHQ354Q.Seq.d/
GATGAAACAACACAAATCGTTATGAATAATGGTATACCATTTATATATAATCCAAATGCA
CGTAAAATATTTGGAGTACCATTGACTCAGGTACCATGTAGAGCGGGTTCAAATGTACCA
ATAATCATCGAAAAACTCATTGATCATATAGAGAGAACATCATTGAATTCCGAGGGTTTA
TTTCGTATACCCGGTGTGGATTTAACAATCAATCAATATATAAAACTATTCGATAATGGT
GAAGATGTTGATGTCTCTCCCATAGAACCCTATACAGCTGCAGGTCTATTGAAAAGATTC
TTTAGAGATTTACCTGTATTCGTACCACAATCAATCAATAAACGTGTGGTATCATTATTC
ATTGATGAAGAAGGCAAAAAGAAACCTGTCGATATGGAAATACTTAGCAATTTACGTGTA
TTGGTGCATCAATTACCAACTGTACATTTTGAAGTAATGCAAGAATTAACAAATCTCTTA
GGTAAACTTATGAGTAGATCCGATCAAAATAAAATGACAATTTCAAATATTGCCATTTGT
TTAGTACCAACCCTAAATTGTGTACCTGCAATCGTTACCTATTCAATTCAAATGCACGAT
TTCTTTTATAATGAAGTTTTTCCACAACATCATCTTTAXXXXXXXXXXAATAGATATAAA
CCAGTTGATCTTACACAATCATCTTCAAACTTTCGTTATTCACGTGAAATTTATGATGAT
GATTATTATTCAAATAATAATTTAATGATGTTTGGTAATGAGCAACCAAATCAAACACCA
ATTTCTGTATCATCTTCATCTGCATTCACACGTCAAAGATCTCAAAGTTGCTTTGAACCA
GAGAATCTTGTATTGCTACAACAACAATATCAACAATATCAACAACAACAACAACAACAA
CAACAAATTCCATTCCAAGCAAATCCACAAATATAGTAATGCTGTTATTGAACAAAAATT
GGATCAAATTAGAGATACCATTAATAATTTACATAGAGATAACCGAGTCTCTAGAGATTA
TACTCATTATCTTAGAGAGGTTGAAGACTTAAGATCATCACTTCAAAAAGAAACCGTTGT
CTCAAATGAATTCATCAAAAATATTGAATTGGAAGATAAATTACGTAGAGAGGAAGAAAA
GAATCAAAGATTAATTGAAGAGATTCATTTACTTGAAACCTATTTCATCTTAAAAGAAAA
ATCAAAAGCAAAACGTTTATCAACCACTAAAGATCTTTTAACTAGATCAAGATCACCAAC
TTTACCAAGTTCTATTAATATGTCAACCTCATCTTTAGGTAGTTCTTCAAGTTCTGCTTA
TAACAATAATAATAATAATAATAATGTACCAAAATAATTAATTTTTAAAAAATTAAATAA
ATTAAAAAATTAATAAATATAAAT
sequence update 2002.10.25
Translated Amino Acid sequence
DETTQIVMNNGIPFIYNPNARKIFGVPLTQVPCRAGSNVPIIIEKLIDHIERTSLNSEGL
FRIPGVDLTINQYIKLFDNGEDVDVSPIEPYTAAGLLKRFFRDLPVFVPQSINKRVVSLF
IDEEGKKKPVDMEILSNLRVLVHQLPTVHFEVMQELTNLLGKLMSRSDQNKMTISNIAIC
LVPTLNCVPAIVTYSIQMHDFFYNEVFPQHHL---

---NRYKPVDLTQSSSNFRYSREIYDDDYYSNNNLMMFGNEQPNQTPISVSSSSAFTRQR
SQSCFEPENLVLLQQQYQQYQQQQQQQQQIPFQANPQI**ccy*tkigsn*ryh**ft*r
*psl*rlysls*rg*rlkiitskrnrclk*ihqky*igr*it*rgrkeskin*rdsft*n
lfhlkrkiksktfinh*rsfn*ikitnftkfy*yvnlifr*ffkfcl*q******ctkii
nf*kik*ikklinin


Translated Amino Acid sequence (All Frames)
Frame A:
DETTQIVMNNGIPFIYNPNARKIFGVPLTQVPCRAGSNVPIIIEKLIDHIERTSLNSEGL
FRIPGVDLTINQYIKLFDNGEDVDVSPIEPYTAAGLLKRFFRDLPVFVPQSINKRVVSLF
IDEEGKKKPVDMEILSNLRVLVHQLPTVHFEVMQELTNLLGKLMSRSDQNKMTISNIAIC
LVPTLNCVPAIVTYSIQMHDFFYNEVFPQHHL---

---NRYKPVDLTQSSSNFRYSREIYDDDYYSNNNLMMFGNEQPNQTPISVSSSSAFTRQR
SQSCFEPENLVLLQQQYQQYQQQQQQQQQIPFQANPQI**ccy*tkigsn*ryh**ft*r
*psl*rlysls*rg*rlkiitskrnrclk*ihqky*igr*it*rgrkeskin*rdsft*n
lfhlkrkiksktfinh*rsfn*ikitnftkfy*yvnlifr*ffkfcl*q******ctkii
nf*kik*ikklinin

Frame B:
mkqhksl*imvyhlyiiqmhvkyleyh*lryhvervqmyq*ssknslii*rehh*iprvy
fvypvwi*qsini*nysimvkmlmslp*npiqlqvy*kdsleiylysyhnqsinvwyhys
lmkkakrnlsiwkylaiyvywcinyqlyilk*ckn*qis*vnl*vdpikik*qfqilpfv
*yqp*ivylqslpiqfkctisfimkffhniif---

---idinqlilhnhlqtfvihvkfmmmiiiqiii**clvmsnqikhqflyhlhlhshvkd
lkvalnqrilycynnninninnnnnnnnkfhskqihkysnavieqkldqirdtinnlhrd
nrvsrdythylrevedlrsslqketvvsnefiknieledklrreeeknqrlieeihllet
yfilkekskakrlsttkdlltrsrsptlpssinmstsslgsssssaynnnnnnnnvpk*l
ifkklnklkn**i*

Frame C:
*nntnrye*wytiyi*skct*niwstidsgtm*sgfkctnnhrkth*syreniiefrgfi
sytrcgfnnqsiyktir*w*rc*clshrtlyscrsiekil*rftcirttinq*tcgiiih
**rrqketcrygnt*qftcigasitnctf*snarinkslr*tye*irsk*ndnfkychlf
stnpklctcnrylfnsnarfll**sfsttssl---

---*i*ts*sytiifklslft*nl***llfk**fndvw**atksntnfciificihtski
skll*tresciatttististtttttttnsipskstnivmlllnknwikleipliiyiei
tesleiiliilerlkt*dhhfkkkplsqmnsskilnwkinyverkkrikd*lkrfiylkp
iss*kknqkqnvyqplkif*ldqdhqlyqvllicqphl*vvlqvllitiiiiiimyqnn*
flkn*in*kinkyk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ354 (VHQ354Q) /CSM/VH/VHQ3-C/VHQ354Q.Seq.d/ 1639 0.0
AFF818 (AFF818Q) /CSM/AF/AFF8-A/AFF818Q.Seq.d/ 1257 0.0
AHI871 (AHI871Q) /CSM/AH/AHI8-C/AHI871Q.Seq.d/ 1215 0.0
VSH518 (VSH518Q) /CSM/VS/VSH5-A/VSH518Q.Seq.d/ 1065 0.0
AHQ488 (AHQ488Q) /CSM/AH/AHQ4-D/AHQ488Q.Seq.d/ 1047 0.0
AHC377 (AHC377Q) /CSM/AH/AHC3-D/AHC377Q.Seq.d/ 1031 0.0
CHR835 (CHR835Q) /CSM/CH/CHR8-B/CHR835Q.Seq.d/ 971 0.0
SHK664 (SHK664Q) /CSM/SH/SHK6-C/SHK664Q.Seq.d/ 819 0.0
AHF171 (AHF171Q) /CSM/AH/AHF1-C/AHF171Q.Seq.d/ 819 0.0
VSH614 (VSH614Q) /CSM/VS/VSH6-A/VSH614Q.Seq.d/ 803 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AF474341) Dictyostelium discoideum ABC transporter ABCC.9 (... 1265 0.0 1
(BJ427801) Dictyostelium discoideum cDNA clone:ddv63l13, 5' ... 1265 0.0 1
(BJ323743) Dictyostelium discoideum cDNA clone:dda12d06, 5' ... 1257 0.0 1
(BJ335034) Dictyostelium discoideum cDNA clone:dda48n18, 5' ... 1215 0.0 1
(BJ339055) Dictyostelium discoideum cDNA clone:dda63p22, 5' ... 1047 0.0 1
(BJ331553) Dictyostelium discoideum cDNA clone:dda35j19, 5' ... 1031 0.0 1
(AU267564) Dictyostelium discoideum vegetative cDNA clone:VS... 1023 0.0 1
(BJ446726) Dictyostelium discoideum cDNA clone:ddv63l13, 3' ... 819 0.0 2
(BJ408400) Dictyostelium discoideum cDNA clone:dds45o16, 3' ... 819 0.0 2
(BJ357570) Dictyostelium discoideum cDNA clone:dda63p22, 3' ... 819 0.0 2
dna update 2008.12.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF081586_1(AF081586|pid:none) Dictyostelium discoideum developme... 156 7e-48
AP007167_104(AP007167|pid:none) Aspergillus oryzae RIB40 genomic... 96 2e-18
AM270251_33(AM270251|pid:none) Aspergillus niger contig An11c034... 89 4e-16
(Q15311) RecName: Full=RalA-binding protein 1; Short=Ra... 88 7e-16
BC145320_1(BC145320|pid:none) Mus musculus ralA binding protein ... 87 1e-15
(Q9PT60) RecName: Full=RalA-binding protein 1-A; Short=... 86 3e-15
BC070617_1(BC070617|pid:none) Xenopus laevis hypothetical protei... 86 3e-15
AJ252165_1(AJ252165|pid:none) Xenopus laevis partial mRNA for Ra... 86 3e-15
AF029913_1(AF029913|pid:none) Cochliobolus heterostrophus GTPase... 85 7e-15
AF027687_1(AF027687|pid:none) Cochliobolus heterostrophus GTPase... 85 7e-15
protein update 2009. 7.22
PSORT

psg: 0.75 gvh: 0.45 alm: 0.29 top: 0.37 tms: 0.07 mit: 0.20 mip: 0.00
nuc: 0.10 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.06 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
24.0 %: endoplasmic reticulum
20.0 %: nuclear
16.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for VHQ354 is cyt

5' end seq. ID VHQ354F
5' end seq.
>VHQ354F.Seq
GATGAAACAACACAAATCGTTATGAATAATGGTATACCATTTATATATAATCCAAATGCA
CGTAAAATATTTGGAGTACCATTGACTCAGGTACCATGTAGAGCGGGTTCAAATGTACCA
ATAATCATCGAAAAACTCATTGATCATATAGAGAGAACATCATTGAATTCCGAGGGTTTA
TTTCGTATACCCGGTGTGGATTTAACAATCAATCAATATATAAAACTATTCGATAATGGT
GAAGATGTTGATGTCTCTCCCATAGAACCCTATACAGCTGCAGGTCTATTGAAAAGATTC
TTTAGAGATTTACCTGTATTCGTACCACAATCAATCAATAAACGTGTGGTATCATTATTC
ATTGATGAAGAAGGCAAAAAGAAACCTGTCGATATGGAAATACTTAGCAATTTACGTGTA
TTGGTGCATCAATTACCAACTGTACATTTTGAAGTAATGCAAGAATTAACAAATCTCTTA
GGTAAACTTATGAGTAGATCCGATCAAAATAAAATGACAATTTCAAATATTGCCATTTGT
TTAGTACCAACCCTAAATTGTGTACCTGCAATCGTTACCTATTCAATTCAAATGCACGAT
TTCTTTTATAATGAAGTTTTTCCACAACATCATCTTTANNNNNNNNNN
Length of 5' end seq. 648
3' end seq. ID VHQ354Z
3' end seq.
>VHQ354Z.Seq
NNNNNNNNNNAATAGATATAAACCAGTTGATCTTACACAATCATCTTCAAACTTTCGTTA
TTCACGTGAAATTTATGATGATGATTATTATTCAAATAATAATTTAATGATGTTTGGTAA
TGAGCAACCAAATCAAACACCAATTTCTGTATCATCTTCATCTGCATTCACACGTCAAAG
ATCTCAAAGTTGCTTTGAACCAGAGAATCTTGTATTGCTACAACAACAATATCAACAATA
TCAACAACAACAACAACAACAACAACAAATTCCATTCCAAGCAAATCCACAAATATAGTA
ATGCTGTTATTGAACAAAAATTGGATCAAATTAGAGATACCATTAATAATTTACATAGAG
ATAACCGAGTCTCTAGAGATTATACTCATTATCTTAGAGAGGTTGAAGACTTAAGATCAT
CACTTCAAAAAGAAACCGTTGTCTCAAATGAATTCATCAAAAATATTGAATTGGAAGATA
AATTACGTAGAGAGGAAGAAAAGAATCAAAGATTAATTGAAGAGATTCATTTACTTGAAA
CCTATTTCATCTTAAAAGAAAAATCAAAAGCAAAACGTTTATCAACCACTAAAGATCTTT
TAACTAGATCAAGATCACCAACTTTACCAAGTTCTATTAATATGTCAACCTCATCTTTAG
GTAGTTCTTCAAGTTCTGCTTATAACAATAATAATAATAATAATAATGTACCAAAATAAT
TAATTTTTAAAAAATTAAATAAATTAAAAAATTAATAAATATAAAT
Length of 3' end seq. 766
Connected seq. ID VHQ354P
Connected seq.
>VHQ354P.Seq
GATGAAACAACACAAATCGTTATGAATAATGGTATACCATTTATATATAATCCAAATGCA
CGTAAAATATTTGGAGTACCATTGACTCAGGTACCATGTAGAGCGGGTTCAAATGTACCA
ATAATCATCGAAAAACTCATTGATCATATAGAGAGAACATCATTGAATTCCGAGGGTTTA
TTTCGTATACCCGGTGTGGATTTAACAATCAATCAATATATAAAACTATTCGATAATGGT
GAAGATGTTGATGTCTCTCCCATAGAACCCTATACAGCTGCAGGTCTATTGAAAAGATTC
TTTAGAGATTTACCTGTATTCGTACCACAATCAATCAATAAACGTGTGGTATCATTATTC
ATTGATGAAGAAGGCAAAAAGAAACCTGTCGATATGGAAATACTTAGCAATTTACGTGTA
TTGGTGCATCAATTACCAACTGTACATTTTGAAGTAATGCAAGAATTAACAAATCTCTTA
GGTAAACTTATGAGTAGATCCGATCAAAATAAAATGACAATTTCAAATATTGCCATTTGT
TTAGTACCAACCCTAAATTGTGTACCTGCAATCGTTACCTATTCAATTCAAATGCACGAT
TTCTTTTATAATGAAGTTTTTCCACAACATCATCTTTA----------AATAGATATAAA
CCAGTTGATCTTACACAATCATCTTCAAACTTTCGTTATTCACGTGAAATTTATGATGAT
GATTATTATTCAAATAATAATTTAATGATGTTTGGTAATGAGCAACCAAATCAAACACCA
ATTTCTGTATCATCTTCATCTGCATTCACACGTCAAAGATCTCAAAGTTGCTTTGAACCA
GAGAATCTTGTATTGCTACAACAACAATATCAACAATATCAACAACAACAACAACAACAA
CAACAAATTCCATTCCAAGCAAATCCACAAATATAGTAATGCTGTTATTGAACAAAAATT
GGATCAAATTAGAGATACCATTAATAATTTACATAGAGATAACCGAGTCTCTAGAGATTA
TACTCATTATCTTAGAGAGGTTGAAGACTTAAGATCATCACTTCAAAAAGAAACCGTTGT
CTCAAATGAATTCATCAAAAATATTGAATTGGAAGATAAATTACGTAGAGAGGAAGAAAA
GAATCAAAGATTAATTGAAGAGATTCATTTACTTGAAACCTATTTCATCTTAAAAGAAAA
ATCAAAAGCAAAACGTTTATCAACCACTAAAGATCTTTTAACTAGATCAAGATCACCAAC
TTTACCAAGTTCTATTAATATGTCAACCTCATCTTTAGGTAGTTCTTCAAGTTCTGCTTA
TAACAATAATAATAATAATAATAATGTACCAAAATAATTAATTTTTAAAAAATTAAATAA
ATTAAAAAATTAATAAATATAAAT
Length of connected seq. 1394
Full length Seq ID -
Full length Seq. -
Length of full length seq. -