VHQ281 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHQ281
Library	VH (Link to library)
Clone ID	VHQ281 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15680-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHQ2-D/VHQ281Q.Seq.d/
Representative seq. ID	VHQ281P (Link to Original site)
Representative DNA sequence	>VHQ281 (VHQ281Q) /CSM/VH/VHQ2-D/VHQ281Q.Seq.d/ AATTAATNATAGTCAACAAAATGTGTAAATATAATGATCATAAATATTTAGTAGAAAAGG TAGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAAATATGATTTACATTTAAAAC CAAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCATCACAGTTCAAGTAAAACAAC CAACAAAAACCATAACTATACATTCAATTGAAATTGAAATTCAATCAGCTTCAATAAAAT CATCATCATCATCTCAATCATCAAAATCAATTACATTTTATGAACCAGAAGAAGTTGTCA TCTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTGTTTATCATTGGTATTTACTG GTTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAGTATACTGTTAAAGGTGAAG ATCGTTATTTAGCAACAACTCAATTCGAAGCCACCGATGCTCGTCGTTCTTTTCCATGTT TTGATGAACCAGCTCATAAAGCAGTTTTCAATATCACTTTAACTGTCTCTGAATGTCATA CCGCTATTTCAAATATGGAAGAAAAATCAATTACTCCAAATAATGATGGTACTAAAACTT ATATATTCGAACAAACTCCAATTATGAGTACATATTTAGTTGCTTATATTGNTGGTGATT TAGXXXXXXXXXXTGTTAAGAAATAAAGTAAACTCTTATTTGGGTATTTTGGGTGACAAA GAGATTGTGGCCGGGGCTAGAAAGAGATTTGAGCAATTCAAAGTCGACCAATCTTCTTTA CCTTCCGATATCCGTTCAAGTGTTTTAGTCACTGTTGTAAAGAATGGTTCCGAAGCTGAA CAACAAGAAATTATCAATAGATACCTCGCTTCCAATGATATTGCAGAGAAATCAAGTTTA TTGTCAGTTGTTTGCAAATCACCATCCAGTGCATTGGTATTGAAGGCTTTGGAATTCTCT GTCTCAAAAGATGTTAGAACTTGTGAATCCTATATGCTTTGGAGAGTCGGAAATGAGTTT AAACCAGTAGTTTGGAAATATTTCACTGAAAACTTTAAATCAATCAATGAAACCTTTAAT CAAAATGTTTTATTCGCTTATATGATCTCTTTTGCTTTGTCCTCAAAAATGACTGATCAA CAATTACAACAAGTTGAAGATTTCTTCAAACAAAATCCAGTTGCAATTGCTGATCGTTCA ATTAAACAAGATTTAGAACAAATTAGAAATAATACAAAATGGTTTAATTCATTTAATAAA GATTTATTAAATTGGATTAAAAAATAAATAATCTAATTTAATAAAGATTTATAAATTTGG ATTTTTATAAAAAATAAAATTTATTTAATTTTTATTATTTTTTTATTAAGTTTTATAAAT AATAAAATAAATTTTCAAATTAATAA
sequence update	2002.10.25
Translated Amino Acid sequence	LXIVNKMCKYNDHKYLVEKVDRLVLPENVVPIKYDLHLKPNLKEFTFKGEETITVQVKQP TKTITIHSIEIEIQSASIKSSSSSQSSKSITFYEPEEVVIFEFENELSVGEYCLSLVFTG LLNDKLKGFYRSKYTVKGEDRYLATTQFEATDARRSFPCFDEPAHKAVFNITLTVSECHT AISNMEEKSITPNNDGTKTYIFEQTPIMSTYLVAYIXGDL--- ---LRNKVNSYLGILGDKEIVAGARKRFEQFKVDQSSLPSDIRSSVLVTVVKNGSEAEQQ EIINRYLASNDIAEKSSLLSVVCKSPSSALVLKALEFSVSKDVRTCESYMLWRVGNEFKP VVWKYFTENFKSINETFNQNVLFAYMISFALSSKMTDQQLQQVEDFFKQNPVAIADRSIK QDLEQIRNNTKWFNSFNKDLLNWIKKiifnkdl*iwifiknkiylifiifllsfinnk infqin
Translated Amino Acid sequence (All Frames)	Frame A: nxstkcvnimiini*kridwyyqkmlyqlnmiyinqiknlllkvkrpsqfknn qqkplyiqlklkfnqlqnhhhhlnhqnqlhfmnqkklsslnlkmnyqlvnivyhwyll vymtnkvsivqsillkvkiviqqlnskppmlvvlfhvlmnqlikqfsisllslnvi plfqiwkknqllqimmvlkliysnklqlvhillilxvi--- ---ceiktliwvfwvtkrlwpglerdlsnskstnllylpisvqvfsllrmvpklnn kklsidtslpmilqrnqvycqlfanhhpvhwyrlwnslsqkmlelvnpicfgesemsln qfgnislktlnqsmkplikmfyslislllcpqklinnynklkissnkiqlqllivql nkinkleiiqnglihlikiyiglknksnlikiykfgflkikfifllffyvlii kifkli Frame B: inxsqqnvisifsrkgrigitrkcctniftfktkfkriyfrrdhhsssktt nknhnytfnnnsisfnkiiiiisiikinyiltrrschlikiiswilfiigiyw fikqikrflsfkvycrrslfsnnsirshrcssffsmftssssfqyhfnclmsy ryfkygrkinyskwynlyirtnsnyeyifsclyxwf--- ---vkkskllfgyfgqrdcgrgkeiaiqsrpifftfrypfkcfshcckewfrstt rnyqiprfqycreikfivsclqitiqcigiegfgilclkrcnlilyalesrkvt ssleifhklinqnlskcfirlydlfcfvlkndstittsrflqtksscncsfn trfrtnkykmvfirfikldkinnli*rfinldfykknlfnfyyffikfyk nkfsn Frame C: LXIVNKMCKYNDHKYLVEKVDRLVLPENVVPIKYDLHLKPNLKEFTFKGEETITVQVKQP TKTITIHSIEIEIQSASIKSSSSSQSSKSITFYEPEEVVIFEFENELSVGEYCLSLVFTG LLNDKLKGFYRSKYTVKGEDRYLATTQFEATDARRSFPCFDEPAHKAVFNITLTVSECHT AISNMEEKSITPNNDGTKTYIFEQTPIMSTYLVAYIXGDL--- ---LRNKVNSYLGILGDKEIVAGARKRFEQFKVDQSSLPSDIRSSVLVTVVKNGSEAEQQ EIINRYLASNDIAEKSSLLSVVCKSPSSALVLKALEFSVSKDVRTCESYMLWRVGNEFKP VVWKYFTENFKSINETFNQNVLFAYMISFALSSKMTDQQLQQVEDFFKQNPVAIADRSIK QDLEQIRNNTKWFNSFNKDLLNWIKKiifnkdl*iwifiknkiylifiifllsfinnk infqin
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHQ281 (VHQ281Q) /CSM/VH/VHQ2-D/VHQ281Q.Seq.d/ 1871 0.0 VHP819 (VHP819Q) /CSM/VH/VHP8-A/VHP819Q.Seq.d/ 1124 0.0 VHP741 (VHP741Q) /CSM/VH/VHP7-B/VHP741Q.Seq.d/ 1124 0.0 VHO863 (VHO863Q) /CSM/VH/VHO8-C/VHO863Q.Seq.d/ 1124 0.0 VHO805 (VHO805Q) /CSM/VH/VHO8-A/VHO805Q.Seq.d/ 1124 0.0 VHN658 (VHN658Q) /CSM/VH/VHN6-C/VHN658Q.Seq.d/ 1124 0.0 VHJ865 (VHJ865Q) /CSM/VH/VHJ8-C/VHJ865Q.Seq.d/ 1124 0.0 VHJ837 (VHJ837Q) /CSM/VH/VHJ8-B/VHJ837Q.Seq.d/ 1124 0.0 VHJ771 (VHJ771Q) /CSM/VH/VHJ7-C/VHJ771Q.Seq.d/ 1124 0.0 VHJ465 (VHJ465Q) /CSM/VH/VHJ4-C/VHJ465Q.Seq.d/ 1124 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446753) Dictyostelium discoideum cDNA clone:ddv63a22, 3' ... 1096 0.0 1 (BJ446284) Dictyostelium discoideum cDNA clone:ddv62b11, 3' ... 1080 0.0 1 (BJ446229) Dictyostelium discoideum cDNA clone:ddv62f06, 3' ... 1080 0.0 1 (BJ446113) Dictyostelium discoideum cDNA clone:ddv61o14, 3' ... 1080 0.0 1 (BJ445800) Dictyostelium discoideum cDNA clone:ddv60n16, 3' ... 1080 0.0 1 (BJ445630) Dictyostelium discoideum cDNA clone:ddv60j02, 3' ... 1080 0.0 1 (BJ445125) Dictyostelium discoideum cDNA clone:ddv58c16, 3' ... 1080 0.0 1 (BJ444821) Dictyostelium discoideum cDNA clone:ddv57e18, 3' ... 1080 0.0 1 (BJ442692) Dictyostelium discoideum cDNA clone:ddv50n17, 3' ... 1080 0.0 1 (BJ442634) Dictyostelium discoideum cDNA clone:ddv50b18, 3' ... 1080 0.0 1
dna update	2008.12.25
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AY631393_1(AY631393\|pid:none) Dictyostelium discoideum puromycin... 369 e-100 AF350242_1(AF350242\|pid:none) Pichia angusta aminopeptidase gene... 160 1e-37 AE014296_282(AE014296\|pid:none) Drosophila melanogaster chromoso... 159 2e-37 AE014296_281(AE014296\|pid:none) Drosophila melanogaster chromoso... 159 2e-37 AF327435_1(AF327435\|pid:none) Drosophila melanogaster puromycin-... 158 5e-37 FM992688_411(FM992688\|pid:none) Candida dubliniensis CD36 chromo... 154 6e-36 (P55786) RecName: Full=Puromycin-sensitive aminopeptidase; ... 150 1e-34 BC098978_1(BC098978\|pid:none) Xenopus laevis hypothetical protei... 148 4e-34 A65888_1(A65888\|pid:none) Sequence 1 from Patent WO9738114. &Y0... 148 5e-34 AJ851657_1(AJ851657\|pid:none) Gallus gallus mRNA for hypothetica... 148 5e-34
protein update	2009. 7.22
PSORT	psg: 0.53 gvh: 0.26 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: cytoplasmic 24.0 %: nuclear 8.0 %: cytoskeletal 8.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for VHQ281 is cyt
5' end seq. ID	VHQ281F
5' end seq.	>VHQ281F.Seq AATTAATNATAGTCAACAAAATGTGTAAATATAATGATCATAAATATTTAGTAGAAAAGG TAGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAAATATGATTTACATTTAAAAC CAAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCATCACAGTTCAAGTAAAACAAC CAACAAAAACCATAACTATACATTCAATTGAAATTGAAATTCAATCAGCTTCAATAAAAT CATCATCATCATCTCAATCATCAAAATCAATTACATTTTATGAACCAGAAGAAGTTGTCA TCTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTGTTTATCATTGGTATTTACTG GTTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAGTATACTGTTAAAGGTGAAG ATCGTTATTTAGCAACAACTCAATTCGAAGCCACCGATGCTCGTCGTTCTTTTCCATGTT TTGATGAACCAGCTCATAAAGCAGTTTTCAATATCACTTTAACTGTCTCTGAATGTCATA CCGCTATTTCAAATATGGAAGAAAAATCAATTACTCCAAATAATGATGGTACTAAAACTT ATATATTCGAACAAACTCCAATTATGAGTACATATTTAGTTGCTTATATTGNTGGTGATT TAGNNNNNNNNNN
Length of 5' end seq.	673
3' end seq. ID	VHQ281Z
3' end seq.	>VHQ281Z.Seq NNNNNNNNNNTGTTAAGAAATAAAGTAAACTCTTATTTGGGTATTTTGGGTGACAAAGAG ATTGTGGCCGGGGCTAGAAAGAGATTTGAGCAATTCAAAGTCGACCAATCTTCTTTACCT TCCGATATCCGTTCAAGTGTTTTAGTCACTGTTGTAAAGAATGGTTCCGAAGCTGAACAA CAAGAAATTATCAATAGATACCTCGCTTCCAATGATATTGCAGAGAAATCAAGTTTATTG TCAGTTGTTTGCAAATCACCATCCAGTGCATTGGTATTGAAGGCTTTGGAATTCTCTGTC TCAAAAGATGTTAGAACTTGTGAATCCTATATGCTTTGGAGAGTCGGAAATGAGTTTAAA CCAGTAGTTTGGAAATATTTCACTGAAAACTTTAAATCAATCAATGAAACCTTTAATCAA AATGTTTTATTCGCTTATATGATCTCTTTTGCTTTGTCCTCAAAAATGACTGATCAACAA TTACAACAAGTTGAAGATTTCTTCAAACAAAATCCAGTTGCAATTGCTGATCGTTCAATT AAACAAGATTTAGAACAAATTAGAAATAATACAAAATGGTTTAATTCATTTAATAAAGAT TTATTAAATTGGATTAAAAAATAAATAATCTAATTTAATAAAGATTTATAAATTTGGATT TTTATAAAAAATAAAATTTATTTAATTTTTATTATTTTTTTATTAAGTTTTATAAATAAT AAAATAAATTTTCAAATTAATAA
Length of 3' end seq.	743
Connected seq. ID	VHQ281P
Connected seq.	>VHQ281P.Seq AATTAATNATAGTCAACAAAATGTGTAAATATAATGATCATAAATATTTAGTAGAAAAGG TAGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAAATATGATTTACATTTAAAAC CAAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCATCACAGTTCAAGTAAAACAAC CAACAAAAACCATAACTATACATTCAATTGAAATTGAAATTCAATCAGCTTCAATAAAAT CATCATCATCATCTCAATCATCAAAATCAATTACATTTTATGAACCAGAAGAAGTTGTCA TCTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTGTTTATCATTGGTATTTACTG GTTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAGTATACTGTTAAAGGTGAAG ATCGTTATTTAGCAACAACTCAATTCGAAGCCACCGATGCTCGTCGTTCTTTTCCATGTT TTGATGAACCAGCTCATAAAGCAGTTTTCAATATCACTTTAACTGTCTCTGAATGTCATA CCGCTATTTCAAATATGGAAGAAAAATCAATTACTCCAAATAATGATGGTACTAAAACTT ATATATTCGAACAAACTCCAATTATGAGTACATATTTAGTTGCTTATATTGNTGGTGATT TAG----------TGTTAAGAAATAAAGTAAACTCTTATTTGGGTATTTTGGGTGACAAA GAGATTGTGGCCGGGGCTAGAAAGAGATTTGAGCAATTCAAAGTCGACCAATCTTCTTTA CCTTCCGATATCCGTTCAAGTGTTTTAGTCACTGTTGTAAAGAATGGTTCCGAAGCTGAA CAACAAGAAATTATCAATAGATACCTCGCTTCCAATGATATTGCAGAGAAATCAAGTTTA TTGTCAGTTGTTTGCAAATCACCATCCAGTGCATTGGTATTGAAGGCTTTGGAATTCTCT GTCTCAAAAGATGTTAGAACTTGTGAATCCTATATGCTTTGGAGAGTCGGAAATGAGTTT AAACCAGTAGTTTGGAAATATTTCACTGAAAACTTTAAATCAATCAATGAAACCTTTAAT CAAAATGTTTTATTCGCTTATATGATCTCTTTTGCTTTGTCCTCAAAAATGACTGATCAA CAATTACAACAAGTTGAAGATTTCTTCAAACAAAATCCAGTTGCAATTGCTGATCGTTCA ATTAAACAAGATTTAGAACAAATTAGAAATAATACAAAATGGTTTAATTCATTTAATAAA GATTTATTAAATTGGATTAAAAAATAAATAATCTAATTTAATAAAGATTTATAAATTTGG ATTTTTATAAAAAATAAAATTTATTTAATTTTTATTATTTTTTTATTAAGTTTTATAAAT AATAAAATAAATTTTCAAATTAATAA
Length of connected seq.	1396
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas