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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHQ244
Library VH
(Link to library)
Clone ID VHQ244
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15722-1
Original site URL
Representative seq. ID VHQ244P
(Link to Original site)
Representative DNA sequence 
>VHQ244 (VHQ244Q) /CSM/VH/VHQ2-B/VHQ244Q.Seq.d/
GAAAAAATTTCAATTTAAAAAAAATAAAGGAAAAAACACACCAAAATTAAATAAGTAAGA
ATAAAAATGAAATATTTATTAGTATATTTACACATATTACTATTTTGTTTATTAAAGATC
AATAGCCAAAAGTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATCAAATTTGAT
GTCTTACAAACAAATGGTGGTATTGGTTTTCTATACTCATATTTAAGTGTTATTTTTACA
ACTTGTAATTATACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGATCATAT
CATTCAACTGTTCCACGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACATAGT
TATAGCAAAGACGGACTAATGATAACATATATATCACAGGATACAACAAATGATAATGAT
TGCAAAAGATATACAACAAATGTGATTTTTCAATGTAGACCAGATGGTGATGTATCCGAT
TCATTAGATGTTGGCATCGACAATATACTTATTGATTCATGTATTGTTGAATTCACACTC
TATTTACGTACAGTGTGTCAAACATGTCCAAACTGTTTAAAAACACATCAAACATCATGT
AATGTGAAAAGTGGTTGGTGTACTTGTGATGGTXXXXXXXXXXAATGTCCACTCCAATTG
TTCGACCNCCAAAATGGTACTTGGTAATAATAANACTGGGTAATTGTACATGCCAATAAT
GAACATTTTGGTAATGGTTGTGAATTNACTCGATGTCCACTCGATTGTTCGACCCCCAAA
TGGTACTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACATTTTGGGTAATT
CTTGTGAATTTACTCGATGTCCACTCGATTGTTCGACACCAAATGGTACTTGTGATAATA
ATACTGGTAATTGTACATGCCATAATGAACATTTTGGTAATGGTTGTGAATTCACTCAAT
GCCCACTCTATTGTTCAACACCAAATGGTACTTGTGATATTAATAGTGGTATTTGTACAT
GTGATAATGAACATATTGGTAATGGTTGCGAAATTAAATTTATTGAATGTAAACATAAAT
GTTCAACCAAACATGGAATATGTGATAATGATAGTGGTAATTGTAAATGTGATACTCAAA
CAAAAGGATTAACGTGTGAAGAATCAAGATTATTAATTGAATCATTAGACTCAATCAATT
CAAAAGGTGGTACAATAAATATAATTGGTTATTTTGGAAATACAACATCATTATTAACAA
TTAAAATTGGTGAATCACAATGTAAAAATATCAAAGTATTCAATGAAACAACATTAAAAT
GTGATATTGGTGAAGGTAAAGGTATTCATAATATTACAATCATTGATGATGACCTTTCGT
TCACAGCAATCAATAAGTTCCAATATCTCGATGAAAAAACAAAAATCTCAAAAATATCGA
GAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGTTGTTGCTGTTTCATTAATTGGTTCTA
TTGCTTTTTATTATCATCACAAAAATAAAAAGGTTAATCTTTTCTTCTAAAAACTAAAAT
AAAATTTAACCATTAGGTTTTT
sequence update 2002.10.25
Translated Amino Acid sequence 
ekisi*kk*rkkhtkik*VRIKMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNIKFD
VLQTNGGIGFLYSYLSVIFTTCNYTIPCGSNSNNVLCGSYHSTVPRKYLSLGFVNGSTHS
YSKDGLMITYISQDTTNDNDCKRYTTNVIFQCRPDGDVSDSLDVGIDNILIDSCIVEFTL
YLRTVCQTCPNCLKTHQTSCNVKSGWCTCDG---

---MSTPIVRPPKWYLVIIXLGNCTCQ**tfw*wl*ixsmstrlfdpqmvlviiilvivh
aimnilgnsceftrcpldcstpngtcdnntgnctchnehfgngceftqcplycstpngtc
dinsgictcdnehigngceikfieckhkcstkhgicdndsgnckcdtqtkgltceesrll
iesldsinskggtiniigyfgnttslltikigesqcknikvfnettlkcdigegkgihni
tiidddlsftainkfqyldektkiskisrgaiagivvgcvvavsligsiafyyhhknkkv
nlff*klk*nltirf
Translated Amino Acid sequence (All Frames) 
Frame A:
ekisi*kk*rkkhtkik*VRIKMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNIKFD
VLQTNGGIGFLYSYLSVIFTTCNYTIPCGSNSNNVLCGSYHSTVPRKYLSLGFVNGSTHS
YSKDGLMITYISQDTTNDNDCKRYTTNVIFQCRPDGDVSDSLDVGIDNILIDSCIVEFTL
YLRTVCQTCPNCLKTHQTSCNVKSGWCTCDG---

---nvhsncstxkmvlgnnxtg*lympimnilvmvvnxldvhsivrppngtcdnntgnct
chnehfg*fl*iysmstrlfdtkwyl***yw*lymp**tfw*wl*ihsmptllfntkwyl
*y**wylym***tyw*wlrn*iy*m*t*mfnqtwnm****w*l*m*ysnkrinv*rikii
n*iirlnqfkrwynkynwlfwkyniiinn*nw*itm*kyqsiq*nnikm*yw*r*rys*y
ynh***pfvhsnq*vpisr*knknlkniercncwyccwlccccfinwfycfllssqk*kg
*sfllktkikfnh*vf

Frame B:
kkfqfkknkgkntpklnk*e*k*niy*yiytyyyfvy*rsiaksialivvlekiiisnlm
sykqmvvlvfythi*vlflqlviilflvvvivimycvdhiiqlfhasifhwdllmavhiv
iaktd***hiyhriqqmimiakdiqqm*ffnvdqmvmypih*mlastiyllihvllnshs
iyvqcvkhvqtv*khikhhvm*kvvgvlvm---

---MSTPIVRPPKWYLVIIXLGNCTCQ**tfw*wl*ixsmstrlfdpqmvlviiilvivh
aimnilgnsceftrcpldcstpngtcdnntgnctchnehfgngceftqcplycstpngtc
dinsgictcdnehigngceikfieckhkcstkhgicdndsgnckcdtqtkgltceesrll
iesldsinskggtiniigyfgnttslltikigesqcknikvfnettlkcdigegkgihni
tiidddlsftainkfqyldektkiskisrgaiagivvgcvvavsligsiafyyhhknkkv
nlff*klk*nltirf

Frame C:
knfnlkkikekthqn*isknkneifisifthitilfikdq*pkvlhl*wcwrrl*yqi*c
ltnkwwywfsilifkcyfynl*lyyslw*****civwiisfncstqvsfigic*wqyt*l
*qrrtndniyitgynk***lqkiynkcdfsm*trw*cirfircwhrqyty*fmyc*ihtl
ftysvsnmsklfkntsnim*cekwlvyl*w---

---cplqlfdxqngtw***xwvivhannehfgngcextrcpldcstpkwyl***yw*lym
p**tfwvilvnlldvhsivrhqmvlviiilvivhaimnilvmvvnslnahsivqhqmvlv
ilivvfvhvimnilvmvaklnllnvninvqpnmeyvimivvivnvilkqkd*rvknqdy*
lnh*tqsiqkvvq*i*lvileiqhhy*qlklvnhnvkiskysmkqh*nvilvkvkvfiil
qslmmtfrsqqsissnismkkqksqkyrevqllvlllvvlllfh*lvlllfiiitkikrl
ifsskn*nki*plgf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ244 (VHQ244Q) /CSM/VH/VHQ2-B/VHQ244Q.Seq.d/                       2623   0.0
VHQ484 (VHQ484Q) /CSM/VH/VHQ4-D/VHQ484Q.Seq.d/                       1413   0.0
VHA768 (VHA768Q) /CSM/VH/VHA7-C/VHA768Q.Seq.d/                       1392   0.0
VHO292 (VHO292Q) /CSM/VH/VHO2-D/VHO292Q.Seq.d/                       1384   0.0
VHN257 (VHN257Q) /CSM/VH/VHN2-C/VHN257Q.Seq.d/                       1384   0.0
VHP522 (VHP522Q) /CSM/VH/VHP5-A/VHP522Q.Seq.d/                       1382   0.0
VHJ613 (VHJ613Q) /CSM/VH/VHJ6-A/VHJ613Q.Seq.d/                       1382   0.0
VHB427 (VHB427Q) /CSM/VH/VHB4-B/VHB427Q.Seq.d/                       1378   0.0
VHM648 (VHM648Q) /CSM/VH/VHM6-B/VHM648Q.Seq.d/                       1376   0.0
VHO542 (VHO542Q) /CSM/VH/VHO5-B/VHO542Q.Seq.d/                       1374   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446630) Dictyostelium discoideum cDNA clone:ddv63g12, 3' ...  1509   0.0    2
(BJ441858) Dictyostelium discoideum cDNA clone:ddv48h03, 3' ...  1346   0.0    2
(BJ443064) Dictyostelium discoideum cDNA clone:ddv51e21, 3' ...  1265   0.0    4
(BJ442604) Dictyostelium discoideum cDNA clone:ddv50l12, 3' ...  1176   0.0    3
(BJ437465) Dictyostelium discoideum cDNA clone:ddv34i07, 3' ...  1164   0.0    6
(BJ443898) Dictyostelium discoideum cDNA clone:ddv54c17, 3' ...  1160   0.0    4
(AU284609) Dictyostelium discoideum gamete cDNA clone:FC-BE2...  1150   0.0    5
(BJ446789) Dictyostelium discoideum cDNA clone:ddv63h22, 3' ...  1150   0.0    5
(BJ446619) Dictyostelium discoideum cDNA clone:ddv63e11, 3' ...  1150   0.0    4
(BJ446427) Dictyostelium discoideum cDNA clone:ddv62n15, 3' ...  1150   0.0    3
dna update 2008.12.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...   125   3e-27
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...   108   4e-22
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...    97   2e-18
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom...    95   6e-18
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...    94   2e-17
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...    92   4e-17
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...    90   2e-16
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom...    90   3e-16
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...    89   6e-16
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...    86   4e-15
protein update 2009. 7.22
PSORT 

 psg: 0.93  gvh: 0.70  alm: 0.39  top: 0.40  tms: 0.00  mit: 0.32  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	 12.0 %: vacuolar
	  8.0 %: cytoplasmic
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi

>> prediction for VHQ244 is exc
5' end seq. ID VHQ244F
5' end seq. 
>VHQ244F.Seq
GAAAAAATTTCAATTTAAAAAAAATAAAGGAAAAAACACACCAAAATTAAATAAGTAAGA
ATAAAAATGAAATATTTATTAGTATATTTACACATATTACTATTTTGTTTATTAAAGATC
AATAGCCAAAAGTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATCAAATTTGAT
GTCTTACAAACAAATGGTGGTATTGGTTTTCTATACTCATATTTAAGTGTTATTTTTACA
ACTTGTAATTATACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGATCATAT
CATTCAACTGTTCCACGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACATAGT
TATAGCAAAGACGGACTAATGATAACATATATATCACAGGATACAACAAATGATAATGAT
TGCAAAAGATATACAACAAATGTGATTTTTCAATGTAGACCAGATGGTGATGTATCCGAT
TCATTAGATGTTGGCATCGACAATATACTTATTGATTCATGTATTGTTGAATTCACACTC
TATTTACGTACAGTGTGTCAAACATGTCCAAACTGTTTAAAAACACATCAAACATCATGT
AATGTGAAAAGTGGTTGGTGTACTTGTGATGGTNNNNNNNNNN
Length of 5' end seq. 643
3' end seq. ID VHQ244Z
3' end seq. 
>VHQ244Z.Seq
NNNNNNNNNNAATGTCCACTCCAATTGTTCGACCNCCAAAATGGTACTTGGTAATAATAA
NACTGGGTAATTGTACATGCCAATAATGAACATTTTGGTAATGGTTGTGAATTNACTCGA
TGTCCACTCGATTGTTCGACCCCCAAATGGTACTTGTGATAATAATACTGGTAATTGTAC
ATGCCATAATGAACATTTTGGGTAATTCTTGTGAATTTACTCGATGTCCACTCGATTGTT
CGACACCAAATGGTACTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACATT
TTGGTAATGGTTGTGAATTCACTCAATGCCCACTCTATTGTTCAACACCAAATGGTACTT
GTGATATTAATAGTGGTATTTGTACATGTGATAATGAACATATTGGTAATGGTTGCGAAA
TTAAATTTATTGAATGTAAACATAAATGTTCAACCAAACATGGAATATGTGATAATGATA
GTGGTAATTGTAAATGTGATACTCAAACAAAAGGATTAACGTGTGAAGAATCAAGATTAT
TAATTGAATCATTAGACTCAATCAATTCAAAAGGTGGTACAATAAATATAATTGGTTATT
TTGGAAATACAACATCATTATTAACAATTAAAATTGGTGAATCACAATGTAAAAATATCA
AAGTATTCAATGAAACAACATTAAAATGTGATATTGGTGAAGGTAAAGGTATTCATAATA
TTACAATCATTGATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATG
AAAAAACAAAAATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGTG
TTGTTGCTGTTTCATTAATTGGTTCTATTGCTTTTTATTATCATCACAAAAATAAAAAGG
TTAATCTTTTCTTCTAAAAACTAAAATAAAATTTAACCATTAGGTTTTT
Length of 3' end seq. 949
Connected seq. ID VHQ244P
Connected seq. 
>VHQ244P.Seq
GAAAAAATTTCAATTTAAAAAAAATAAAGGAAAAAACACACCAAAATTAAATAAGTAAGA
ATAAAAATGAAATATTTATTAGTATATTTACACATATTACTATTTTGTTTATTAAAGATC
AATAGCCAAAAGTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATCAAATTTGAT
GTCTTACAAACAAATGGTGGTATTGGTTTTCTATACTCATATTTAAGTGTTATTTTTACA
ACTTGTAATTATACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGATCATAT
CATTCAACTGTTCCACGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACATAGT
TATAGCAAAGACGGACTAATGATAACATATATATCACAGGATACAACAAATGATAATGAT
TGCAAAAGATATACAACAAATGTGATTTTTCAATGTAGACCAGATGGTGATGTATCCGAT
TCATTAGATGTTGGCATCGACAATATACTTATTGATTCATGTATTGTTGAATTCACACTC
TATTTACGTACAGTGTGTCAAACATGTCCAAACTGTTTAAAAACACATCAAACATCATGT
AATGTGAAAAGTGGTTGGTGTACTTGTGATGGT----------AATGTCCACTCCAATTG
TTCGACCNCCAAAATGGTACTTGGTAATAATAANACTGGGTAATTGTACATGCCAATAAT
GAACATTTTGGTAATGGTTGTGAATTNACTCGATGTCCACTCGATTGTTCGACCCCCAAA
TGGTACTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACATTTTGGGTAATT
CTTGTGAATTTACTCGATGTCCACTCGATTGTTCGACACCAAATGGTACTTGTGATAATA
ATACTGGTAATTGTACATGCCATAATGAACATTTTGGTAATGGTTGTGAATTCACTCAAT
GCCCACTCTATTGTTCAACACCAAATGGTACTTGTGATATTAATAGTGGTATTTGTACAT
GTGATAATGAACATATTGGTAATGGTTGCGAAATTAAATTTATTGAATGTAAACATAAAT
GTTCAACCAAACATGGAATATGTGATAATGATAGTGGTAATTGTAAATGTGATACTCAAA
CAAAAGGATTAACGTGTGAAGAATCAAGATTATTAATTGAATCATTAGACTCAATCAATT
CAAAAGGTGGTACAATAAATATAATTGGTTATTTTGGAAATACAACATCATTATTAACAA
TTAAAATTGGTGAATCACAATGTAAAAATATCAAAGTATTCAATGAAACAACATTAAAAT
GTGATATTGGTGAAGGTAAAGGTATTCATAATATTACAATCATTGATGATGACCTTTCGT
TCACAGCAATCAATAAGTTCCAATATCTCGATGAAAAAACAAAAATCTCAAAAATATCGA
GAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGTTGTTGCTGTTTCATTAATTGGTTCTA
TTGCTTTTTATTATCATCACAAAAATAAAAAGGTTAATCTTTTCTTCTAAAAACTAAAAT
AAAATTTAACCATTAGGTTTTT
Length of connected seq. 1572
Full length Seq ID -
Full length Seq. -
Length of full length seq. -