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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHQ207
Library VH
(Link to library)
Clone ID VHQ207
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16579-1
Original site URL
Representative seq. ID VHQ207P
(Link to Original site)
Representative DNA sequence 
>VHQ207 (VHQ207Q) /CSM/VH/VHQ2-A/VHQ207Q.Seq.d/
ATTCAAAAGAATTTACTTTGGAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCA
CTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCA
TTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGG
GTTAAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATC
AATTGGCGGTCGAGGAAGAGTTATCTTTTCTTGTTAACATTGTCTTGGGGTCCTCCGAAT
CAGGTCAACTGGAGACGAGGATTCATCGCACAATGGAAGAGCACAGTCCTTTGGATTGGG
TCTCGCATCCGCTAAATGGTCCTTGAAAACCGGATTATGGTATTTAATCCTATTTGGTGT
TCGTACCAATAACCACATCAGGTCTCCAAGGTGAATAGCCTCTGGTCAAATGTATTAATG
TAGATAAGGGAAGTCGGCAAAACCGATCTGTAACTTCGGGATAAGGATTGGCTCTAAAGG
CTGGTGGAGTGGACATATTGGAGTTTGCTATTTGTTTTTTACTTTTAGGATGGGCAACTG
TTTTGAAGXXXXXXXXXXAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGG
GGTTGAGGCTTTTCCATTAGTTCTTGAATTGTTTATATTAAATTTATAGAAAATGAATCG
ACAACAAATTAGAAGAGTTGAAACATTAACTAATCATTTATGTTCATCATCAAATGAAAG
TTTTTATCTCTCATCAAATAATACAGATGCATCATTAAGAGAACTTGTTATTAGAGCACA
AGCTCAAAGAAATGCAAGAAATACTAAAACTCTTAAAGGTTTAGAAGAGATGAAAACTTT
AGTTGGTAAAGAGATTGGTACAAGTGAATACTTTAAAATCACTCAAGATCGTGTAAACTC
TTTTGCTGAATCAACTGGTGATTTCCAATGGATTCATATTGATCCAGAAAGAGCTAAATC
TGAAAGTCCTTTTGGTGGTCCAATTGCACATGGTTTCTTAACATTATCATTAGCACCAAT
GTTTGCAGAAGAAGTTATGCCAAATGTTGAAGGTATTAAATATGGTGTAAATTATGGTTT
CAATAAAATTAGATTCTTATCGCCAGTACCAGTCGATGGTAATTTAAGATGTAAATTTGA
ATTACAAGAATTAACACCAGTTTCAGGTGGTGCTCAAGCTGTTAAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
fkriyfggrsgegfhnngihlwvsrs*glg*lslirllghwieseggfntsdfigrkgsg
lkflhhrmgy*gnrs*sgtsiggrgrvifsc*hclgvlrirstgdedsshngraqsfglg
lasakwslktglwylilfgvrtnnhirspr*iasgqmy*cr*GKSAKPICNFGIRIGSKG
WWSGHIGVCYLFFTFRMGNCFE---

---TRCCKLPSSVQLRGVEAFPLVLELFILNL*kmnrqqirrvetltnhlcsssnesfyl
ssnntdaslrelviraqaqrnarntktlkgleemktlvgkeigtseyfkitqdrvnsfae
stgdfqwihidperaksespfggpiahgfltlslapmfaeevmpnvegikygvnygfnki
rflspvpvdgnlrckfelqeltpvsggaqavkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
iqknllwrpkwgrvp*qwnslmgesilrfgltlsnkvtrsldrk*rwl*h**lyrpkgkr
vkipapsngilg*pivirdinwrsrksylflltlswgppnqvnwrrgfiaqwkstvlwig
srir*mvlenrimvfnpiwcsyq*phqvskvnslwsnvlm*irevgktdl*lrdkdwl*r
lvewtywsllfvfyf*dgqlf*---

---n*vl*ase*rsvtrg*gfsiss*ivyikfienesttn*ks*nin*sfmfiik*kfls
lik*yrciikrtcy*stsskkckky*ns*rfrrdenfsw*rdwyk*il*nhsrscklfc*
inw*fpmdsy*srks*i*ksfwwsnctwflniiistnvcrrsyakc*ry*iwcklwfq*n
*iliastsrw*fkm*i*itrintsfrwcssc*kk

Frame B:
fkriyfggrsgegfhnngihlwvsrs*glg*lslirllghwieseggfntsdfigrkgsg
lkflhhrmgy*gnrs*sgtsiggrgrvifsc*hclgvlrirstgdedsshngraqsfglg
lasakwslktglwylilfgvrtnnhirspr*iasgqmy*cr*GKSAKPICNFGIRIGSKG
WWSGHIGVCYLFFTFRMGNCFE---

---TRCCKLPSSVQLRGVEAFPLVLELFILNL*kmnrqqirrvetltnhlcsssnesfyl
ssnntdaslrelviraqaqrnarntktlkgleemktlvgkeigtseyfkitqdrvnsfae
stgdfqwihidperaksespfggpiahgfltlslapmfaeevmpnvegikygvnygfnki
rflspvpvdgnlrckfelqeltpvsggaqavkkk

Frame C:
skeftleaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl*aereag
*nsctiewdirvtdrnpghqlaveeelsflvnivlgssesgqletrihrtmeehspldwv
shplngp*kpdygi*sylvfvpittsglqge*plvkcinvdkgsrqnrsvtsg*glalka
ggvdilefaicflllgwatvlk---

---lgavsfrvafsyeglrlfh*flncly*iyrk*idnkleelkh*liiyvhhqmkvfis
hqiiqmhh*enlllehklkemqeilkllkv*kr*kl*lvkrlvqvntlkslkiv*tllln
qlvisngfiliqkelnlkvllvvqlhmvs*hyh*hqclqkklcqmlkvlnmv*imvsikl
dsyrqyqsmvi*dvnlnykn*hqfqvvlkllkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ207 (VHQ207Q) /CSM/VH/VHQ2-A/VHQ207Q.Seq.d/                       2405   0.0
VHK396 (VHK396Q) /CSM/VH/VHK3-D/VHK396Q.Seq.d/                       1197   0.0
VHH863 (VHH863Q) /CSM/VH/VHH8-C/VHH863Q.Seq.d/                       1195   0.0
SHI601 (SHI601Q) /CSM/SH/SHI6-A/SHI601Q.Seq.d/                       1187   0.0
AHL322 (AHL322Q) /CSM/AH/AHL3-A/AHL322Q.Seq.d/                       1183   0.0
CHS113 (CHS113Q) /CSM/CH/CHS1-A/CHS113Q.Seq.d/                       1181   0.0
VHO517 (VHO517Q) /CSM/VH/VHO5-A/VHO517Q.Seq.d/                       1152   0.0
VHL535 (VHL535Q) /CSM/VH/VHL5-B/VHL535Q.Seq.d/                       1126   0.0
VHA502 (VHA502Q) /CSM/VH/VHA5-A/VHA502Q.Seq.d/                       1118   0.0
VHJ866 (VHJ866Q) /CSM/VH/VHJ8-C/VHJ866Q.Seq.d/                       1116   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446580) Dictyostelium discoideum cDNA clone:ddv63m02, 3' ...  1239   0.0    1
(BJ427662) Dictyostelium discoideum cDNA clone:ddv63m02, 5' ...  1203   0.0    1
(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1195   0.0    1
(BJ443122) Dictyostelium discoideum cDNA clone:ddv51p23, 3' ...  1195   0.0    1
(BJ422673) Dictyostelium discoideum cDNA clone:ddv46n16, 5' ...  1195   0.0    1
(BJ395997) Dictyostelium discoideum cDNA clone:dds41a02, 5' ...  1187   0.0    1
(BJ371460) Dictyostelium discoideum cDNA clone:ddc58i03, 5' ...  1181   0.0    1
(BJ336223) Dictyostelium discoideum cDNA clone:dda53l05, 5' ...  1181   0.0    1
(BJ426713) Dictyostelium discoideum cDNA clone:ddv60a05, 5' ...  1152   0.0    1
(BJ425001) Dictyostelium discoideum cDNA clone:ddv54e09, 5' ...  1126   0.0    1
dna update 2008.12.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001068_2161(CP001068|pid:none) Ralstonia pickettii 12J chromos...   133   2e-29
CP001635_4345(CP001635|pid:none) Variovorax paradoxus S110 chrom...   132   3e-29
CU633749_1028(CU633749|pid:none) Cupriavidus taiwanensis str. LM...   132   3e-29
AM260479_1059(AM260479|pid:none) Ralstonia eutropha H16 chromoso...   132   3e-29
AE010300_899(AE010300|pid:none) Leptospira interrogans serovar l...   130   1e-28
AL646052_2041(AL646052|pid:none) Ralstonia solanacearum GMI1000 ...   129   2e-28
CP000316_1224(CP000316|pid:none) Polaromonas sp. JS666, complete...   129   2e-28
CP000348_2304(CP000348|pid:none) Leptospira borgpetersenii serov...   129   3e-28
CP000248_3166(CP000248|pid:none) Novosphingobium aromaticivorans...   128   5e-28
CP000431_2990(CP000431|pid:none) Rhodococcus jostii RHA1, comple...   128   5e-28
protein update 2009. 7.22
PSORT 

 psg: 0.71  gvh: 0.54  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for VHQ207 is nuc
5' end seq. ID VHQ207F
5' end seq. 
>VHQ207F.Seq
ATTCAAAAGAATTTACTTTGGAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCA
CTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCA
TTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGG
GTTAAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATC
AATTGGCGGTCGAGGAAGAGTTATCTTTTCTTGTTAACATTGTCTTGGGGTCCTCCGAAT
CAGGTCAACTGGAGACGAGGATTCATCGCACAATGGAAGAGCACAGTCCTTTGGATTGGG
TCTCGCATCCGCTAAATGGTCCTTGAAAACCGGATTATGGTATTTAATCCTATTTGGTGT
TCGTACCAATAACCACATCAGGTCTCCAAGGTGAATAGCCTCTGGTCAAATGTATTAATG
TAGATAAGGGAAGTCGGCAAAACCGATCTGTAACTTCGGGATAAGGATTGGCTCTAAAGG
CTGGTGGAGTGGACATATTGGAGTTTGCTATTTGTTTTTTACTTTTAGGATGGGCAACTG
TTTTGAAGNNNNNNNNNN
Length of 5' end seq. 618
3' end seq. ID VHQ207Z
3' end seq. 
>VHQ207Z.Seq
NNNNNNNNNNAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGG
CTTTTCCATTAGTTCTTGAATTGTTTATATTAAATTTATAGAAAATGAATCGACAACAAA
TTAGAAGAGTTGAAACATTAACTAATCATTTATGTTCATCATCAAATGAAAGTTTTTATC
TCTCATCAAATAATACAGATGCATCATTAAGAGAACTTGTTATTAGAGCACAAGCTCAAA
GAAATGCAAGAAATACTAAAACTCTTAAAGGTTTAGAAGAGATGAAAACTTTAGTTGGTA
AAGAGATTGGTACAAGTGAATACTTTAAAATCACTCAAGATCGTGTAAACTCTTTTGCTG
AATCAACTGGTGATTTCCAATGGATTCATATTGATCCAGAAAGAGCTAAATCTGAAAGTC
CTTTTGGTGGTCCAATTGCACATGGTTTCTTAACATTATCATTAGCACCAATGTTTGCAG
AAGAAGTTATGCCAAATGTTGAAGGTATTAAATATGGTGTAAATTATGGTTTCAATAAAA
TTAGATTCTTATCGCCAGTACCAGTCGATGGTAATTTAAGATGTAAATTTGAATTACAAG
AATTAACACCAGTTTCAGGTGGTGCTCAAGCTGTTAAAAAAAAA
Length of 3' end seq. 644
Connected seq. ID VHQ207P
Connected seq. 
>VHQ207P.Seq
ATTCAAAAGAATTTACTTTGGAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCA
CTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCA
TTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGG
GTTAAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATC
AATTGGCGGTCGAGGAAGAGTTATCTTTTCTTGTTAACATTGTCTTGGGGTCCTCCGAAT
CAGGTCAACTGGAGACGAGGATTCATCGCACAATGGAAGAGCACAGTCCTTTGGATTGGG
TCTCGCATCCGCTAAATGGTCCTTGAAAACCGGATTATGGTATTTAATCCTATTTGGTGT
TCGTACCAATAACCACATCAGGTCTCCAAGGTGAATAGCCTCTGGTCAAATGTATTAATG
TAGATAAGGGAAGTCGGCAAAACCGATCTGTAACTTCGGGATAAGGATTGGCTCTAAAGG
CTGGTGGAGTGGACATATTGGAGTTTGCTATTTGTTTTTTACTTTTAGGATGGGCAACTG
TTTTGAAG----------AACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGG
GGTTGAGGCTTTTCCATTAGTTCTTGAATTGTTTATATTAAATTTATAGAAAATGAATCG
ACAACAAATTAGAAGAGTTGAAACATTAACTAATCATTTATGTTCATCATCAAATGAAAG
TTTTTATCTCTCATCAAATAATACAGATGCATCATTAAGAGAACTTGTTATTAGAGCACA
AGCTCAAAGAAATGCAAGAAATACTAAAACTCTTAAAGGTTTAGAAGAGATGAAAACTTT
AGTTGGTAAAGAGATTGGTACAAGTGAATACTTTAAAATCACTCAAGATCGTGTAAACTC
TTTTGCTGAATCAACTGGTGATTTCCAATGGATTCATATTGATCCAGAAAGAGCTAAATC
TGAAAGTCCTTTTGGTGGTCCAATTGCACATGGTTTCTTAACATTATCATTAGCACCAAT
GTTTGCAGAAGAAGTTATGCCAAATGTTGAAGGTATTAAATATGGTGTAAATTATGGTTT
CAATAAAATTAGATTCTTATCGCCAGTACCAGTCGATGGTAATTTAAGATGTAAATTTGA
ATTACAAGAATTAACACCAGTTTCAGGTGGTGCTCAAGCTGTTAAAAAAAAA
Length of connected seq. 1242
Full length Seq ID -
Full length Seq. -
Length of full length seq. -