>VHQ187 (VHQ187Q) /CSM/VH/VHQ1-D/VHQ187Q.Seq.d/
XXXXXXXXXXCTGCCTCCCCAACTCTCTTAGAACCAATNTACNTAGTAGNAATTNCTGCC
CCAGAAAACGCTATTGGTGGTATTTACTCTGTANTCNATCGTCGTAGAGGTATTGTTATT
GGTGAAGAACGTCGNATCGGTTCCCCATTATTCTCTGTCAAAGCTCATNTACCAGTATTA
GAATCNTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAA
TGTGTCTTCGATCATTGGGCTTCAATTGGTGNTGTCAACAAAGATAAGAAAGCCACTGAA
GTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCANATCTTGACAAA
TTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTAGAGTTTTCAAAAATAGTAATCAA
ATCTAAAAAAAA

---ASPTLLEPXYXVXIXAPENAIGGIYSVXXRRRGIVIGEERRIGSPLFSVKAHXPVLE
SFGFTADLRSHTAGQAFPQCVFDHWASIGXVNKDKKATEVALATRKRKGLAPEIPXLDKF
HEKL*ti*valrvfknsnqi*kk

Frame A:
---clpnslrtnxxsxnxcprkrywwyllcxxss*rycyw*rtsxrfpiilcqssxtsir
ixrfhr*ftfphcrssfptmclrslgfnwxcqqr*esh*srfshqkekrfsprnpxs*qi
prktlnnlsrt*sfqk**snlkk


Frame B:
---ASPTLLEPXYXVXIXAPENAIGGIYSVXXRRRGIVIGEERRIGSPLFSVKAHXPVLE
SFGFTADLRSHTAGQAFPQCVFDHWASIGXVNKDKKATEVALATRKRKGLAPEIPXLDKF
HEKL*ti*valrvfknsnqi*kk


Frame C:
---ppqls*nqxt**xxlpqktllvvftlxsivvevlllvknvxsvphyslsklxyqy*n
xsvspliyvptlpvklshnvssiiglqlvxstkirkplksl*pperekv*pqksxiltns
tknskqfkshlefskivikskk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ187 (VHQ187Q) /CSM/VH/VHQ1-D/VHQ187Q.Seq.d/                        755   0.0
VHN502 (VHN502Q) /CSM/VH/VHN5-A/VHN502Q.Seq.d/                        747   0.0
VHJ480 (VHJ480Q) /CSM/VH/VHJ4-D/VHJ480Q.Seq.d/                        747   0.0
VHJ253 (VHJ253Q) /CSM/VH/VHJ2-C/VHJ253Q.Seq.d/                        747   0.0
VHJ122 (VHJ122Q) /CSM/VH/VHJ1-A/VHJ122Q.Seq.d/                        747   0.0
VHD338 (VHD338Q) /CSM/VH/VHD3-B/VHD338Q.Seq.d/                        747   0.0
VHD321 (VHD321Q) /CSM/VH/VHD3-A/VHD321Q.Seq.d/                        747   0.0
VHC715 (VHC715Q) /CSM/VH/VHC7-A/VHC715Q.Seq.d/                        747   0.0
VHH585 (VHH585Q) /CSM/VH/VHH5-D/VHH585Q.Seq.d/                        743   0.0
VHK526 (VHK526Q) /CSM/VH/VHK5-B/VHK526Q.Seq.d/                        741   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds.   609   0.0    2
BX549986|BX549986.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse110c08_p1c.    78   1e-10  1
BX569353|BX569353.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse99a12_p1c.    78   1e-10  1
BX557368|BX557368.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse31h04_p1c.    78   1e-10  1
BX565591|BX565591.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse78d05_p1c.    78   1e-10  1
BX564658|BX564658.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse73a01_p1c.    78   1e-10  1
BX566526|BX566526.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse82g03_p1c.    78   1e-10  1
BX557682|BX557682.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse33h07_p1c.    78   1e-10  1
BX557472|BX557472.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse32f02_p1c.    78   1e-10  1
AF534908|AF534908.1 Tetrahymena thermophila elongation factor 2 gene, complete cds.    60   1e-10  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q06193) RecName: Full=Elongation factor 2;          Short=EF-2;...   110   2e-23
CP000881_15(CP000881|pid:none) Hemiselmis andersenii chromosome ...   105   4e-22
AY831447_1(AY831447|pid:none) Monocercomonoides sp. PA203 transl...   104   8e-22
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation...   104   1e-21
AF083031_87(AF083031|pid:none) Guillardia theta nucleomorph chro...   104   1e-21
DQ848932_1(DQ848932|pid:none) Scophthalmus maximus clone kbc101 ...   103   2e-21
A40411(A40411) translation elongation factor eEF-2 - Caenorhabdi...   103   2e-21
AF544973_1(AF544973|pid:none) Ctenopharyngodon idella elongation...   103   2e-21
(P09445) RecName: Full=Elongation factor 2;          Short=EF-2;...   103   2e-21
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio...   102   3e-21

 psg: 0.75  gvh: 0.42  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for VHQ187 is nuc

>VHQ187Z.Seq
NNNNNNNNNNCTGCCTCCCCAACTCTCTTAGAACCAATNTACNTAGTAGNAATTNCTGCC
CCAGAAAACGCTATTGGTGGTATTTACTCTGTANTCNATCGTCGTAGAGGTATTGTTATT
GGTGAAGAACGTCGNATCGGTTCCCCATTATTCTCTGTCAAAGCTCATNTACCAGTATTA
GAATCNTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAA
TGTGTCTTCGATCATTGGGCTTCAATTGGTGNTGTCAACAAAGATAAGAAAGCCACTGAA
GTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCANATCTTGACAAA
TTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTAGAGTTTTCAAAAATAGTAATCAA
ATCTAAAAAAAA