>AFO874 (AFO874Q) /CSM/AF/AFO8-D/AFO874Q.Seq.d/
XXXXXXXXXXGGATGTATATTTTCAATGTTAAGTTATCCCAACATTTATTGATGCATGGA
GATCATTAAAAGAATGCATTGAAAGTGGTGTTAGTGGTTTTCAAGCAAAGCATGGTATGA
CATTCTTTCAATATATTGATGAAAAAGATACTTATATTAAAAAGATATTTGATTCTGCAA
TGAGACAAAGAAATTATGCAACTAAAATACATACACAAATAATCAATGGTTATGATTTTT
CAAAGTATAAAAAAGTTTGTGATATTGGTGGAGGTATCGGATTCCTTGGCTTTGAAATTG
TGAATCACAATGCCAATACGTGTGTATGTGTATTAGAGTTGGAGGAGACTGTTAGAAATG
GGTTAGAACAAAGTAAAGTAGATGAAAAGAAGCAACGTATAATTGAGGAACAAAGATTGG
TTTTTAAAACTGGTAATATGTTTATACCAAGATCAATCCCATCTGCAAATCTTTACATTA
TGATGCAAGTTATTCATGATTGGAATAACAATGATGCAATTAAAATTCTATCATCTGTTG
CATCAACTATGAGAATGGAGAGAAACCACACTGGTCAATCTCCANAATTATTAATCATTG
ATTCAATCCTTGATGATAATATCAATAATGACACCTACAAACGTTCATGNANACCTGATA
TCATAATGATGGCAATTGTAGGTGGTNAAGAAAGAA

---dvyfqc*VIPTFIDAWRSLKECIESGVSGFQAKHGMTFFQYIDEKDTYIKKIFDSAM
RQRNYATKIHTQIINGYDFSKYKKVCDIGGGIGFLGFEIVNHNANTCVCVLELEETVRNG
LEQSKVDEKKQRIIEEQRLVFKTGNMFIPRSIPSANLYIMMQVIHDWNNNDAIKILSSVA
STMRMERNHTGQSPXLLIIDSILDDNINNDTYKRSXXPDIIMMAIVGGXER

Frame A:
---dvyfqc*VIPTFIDAWRSLKECIESGVSGFQAKHGMTFFQYIDEKDTYIKKIFDSAM
RQRNYATKIHTQIINGYDFSKYKKVCDIGGGIGFLGFEIVNHNANTCVCVLELEETVRNG
LEQSKVDEKKQRIIEEQRLVFKTGNMFIPRSIPSANLYIMMQVIHDWNNNDAIKILSSVA
STMRMERNHTGQSPXLLIIDSILDDNINNDTYKRSXXPDIIMMAIVGGXER


Frame B:
---myifnvklsqhllmhgdh*knalkvvlvvfkqsmv*hsfnilmkkililkrylilq*
dkeimqlkyihk*smvmifqsikkfvilvevsdslalkl*itmpirvyvy*swrrllemg
*nkvk*mkrsnv*lrnkdwflklviclyqdqshlqiftl*cklfmigitmmqlkfyhllh
ql*ewrettlvnlxny*sliqslmiisimtptnvhxxlis**wql*vvkke


Frame C:
---cifsmlsypniy*cmeiikrmh*kwc*wfsskawydilsiy**kryly*kdi*fcne
tkklcn*ntytnnqwl*ffkv*ksl*ywwryripwl*ncesqcqyvcmcirvggdc*kwv
rtk*sr*keatyn*gtkigf*nw*yvytkinpickslhydasys*le*q*cn*nsiicci
nyengekphwsisxiinh*fnp***yq**hlqtfmxt*yhndgncrwxrk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFO874 (AFO874Q) /CSM/AF/AFO8-D/AFO874Q.Seq.d/                       1336   0.0
SSM369 (SSM369Q) /CSM/SS/SSM3-C/SSM369Q.Seq.d/                        888   0.0
AFJ725 (AFJ725Q) /CSM/AF/AFJ7-B/AFJ725Q.Seq.d/                        854   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/                38   0.17
VSG202 (VSG202Q) /CSM/VS/VSG2-A/VSG202Q.Seq.d/                         36   0.69
VHM559 (VHM559Q) /CSM/VH/VHM5-C/VHM559Q.Seq.d/                         36   0.69
SHK128 (SHK128Q) /CSM/SH/SHK1-B/SHK128Q.Seq.d/                         36   0.69
CHP227 (CHP227Q) /CSM/CH/CHP2-B/CHP227Q.Seq.d/                         36   0.69
CHE793 (CHE793Q) /CSM/CH/CHE7-D/CHE793Q.Seq.d/                         36   0.69
AFG506 (AFG506Q) /CSM/AF/AFG5-A/AFG506Q.Seq.d/                         36   0.69

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC074097|AC074097.6 Homo sapiens BAC clone RP11-333M19 from 2, complete sequence.    34  0.030  4
AL355502|AL355502.6 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-477B18.    50  0.037  1
AL137009|AL137009.8 Human DNA sequence from clone RP3-370O5 on chromosome 6 Contains  STSs, GSSs and a CpG island.    50  0.30  2
AL391623|AL391623.13 Human DNA sequence from clone RP3-414F14 on chromosome 11.    42  0.51  2
AF359993|AF359993.1 Penaeus (Litopenaeus) vannamei microsatellite TUMXLv10.323 sequence.    46  0.58  1
AC087467|AC087467.1 Homo sapiens chromosome 15 clone RP11-164K24 map 15, LOW-PASS SEQUENCE SAMPLING.    44  0.60  2
BH158513|BH158513.1 ENTQX43TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  0.78  2
AC124657|AC124657.5 Homo sapiens chromosome 11, clone RP11-624D11, complete sequence.    42  0.88  5
AC012112|AC012112.3 Homo sapiens chromosome 11 clone RP11-9J8 map 11, WORKING DRAFT SEQUENCE, 6 unordered pieces.    42  1.1  5
AC021298|AC021298.5 Homo sapiens chromosome 11 clone RP11-222M17 map 11, WORKING DRAFT SEQUENCE, 5 ordered pieces.    42  1.4  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX571875_105(BX571875|pid:none) Photorhabdus luminescens subsp. ...    60   6e-08
DQ838002_39(DQ838002|pid:none) Streptomyces lavendulae strain NR...    59   1e-07
BX571875_101(BX571875|pid:none) Photorhabdus luminescens subsp. ...    58   2e-07
BC154029_1(BC154029|pid:none) Danio rerio zgc:171885, mRNA (cDNA...    57   4e-07
AB232153_1(AB232153|pid:none) Eschscholzia californica Ec70MT mR...    56   9e-07
CP000096_752(CP000096|pid:none) Pelodictyon luteolum DSM 273, co...    55   1e-06
AM492533_30(AM492533|pid:none) Streptomyces tendae lysolipin bio...    55   1e-06
BX571875_104(BX571875|pid:none) Photorhabdus luminescens subsp. ...    55   3e-06
AM420293_2538(AM420293|pid:none) Saccharopolyspora erythraea NRR...    55   3e-06
AB436792_1(AB436792|pid:none) Ocimum basilicum CVOMT mRNA for ch...    54   4e-06

 psg: 0.59  gvh: 0.36  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for AFO874 is cyt

>AFO874Z.Seq
----------GGATGTATATTTTCAATGTTAAGTTATCCCAACATTTATTGATGCATGGA
GATCATTAAAAGAATGCATTGAAAGTGGTGTTAGTGGTTTTCAAGCAAAGCATGGTATGA
CATTCTTTCAATATATTGATGAAAAAGATACTTATATTAAAAAGATATTTGATTCTGCAA
TGAGACAAAGAAATTATGCAACTAAAATACATACACAAATAATCAATGGTTATGATTTTT
CAAAGTATAAAAAAGTTTGTGATATTGGTGGAGGTATCGGATTCCTTGGCTTTGAAATTG
TGAATCACAATGCCAATACGTGTGTATGTGTATTAGAGTTGGAGGAGACTGTTAGAAATG
GGTTAGAACAAAGTAAAGTAGATGAAAAGAAGCAACGTATAATTGAGGAACAAAGATTGG
TTTTTAAAACTGGTAATATGTTTATACCAAGATCAATCCCATCTGCAAATCTTTACATTA
TGATGCAAGTTATTCATGATTGGAATAACAATGATGCAATTAAAATTCTATCATCTGTTG
CATCAACTATGAGAATGGAGAGAAACCACACTGGTCAATCTCCANAATTATTAATCATTG
ATTCAATCCTTGATGATAATATCAATAATGACACCTACAAACGTTCATGNANACCTGATA
TCATAATGATGGCAATTGTAGGTGGTNAAGAAAGAA