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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHQ142
Library VH
(Link to library)
Clone ID VHQ142
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15897-1
Original site URL
Representative seq. ID VHQ142P
(Link to Original site)
Representative DNA sequence 
>VHQ142 (VHQ142Q) /CSM/VH/VHQ1-B/VHQ142Q.Seq.d/
ATNATTTCAATGAATATTTAATTAAATTCAATTTTATATATATATATAAAAAGATGAAAA
CTATTAAAAGTTTATTTTTACTGTCATTGTTGATAGTGAATTTATTAATAAGTTCAACAT
ATGGAAGTTCAATTAGAGTAAGCATTGTTGGAGGTGAAGAAGCTGAAGTCATTGAAAAAC
CACGTACTTTTGGAAATAAAAGAGAACTCAAATTAGAGTATAGTCAAATTTATCCAAAGA
AACAATTAAATCAAGAAAATATTAATTTCATGTCTGCCAGAGATACTTTTGTTGATAATT
TAATGTCAAAAATGTCAATCACTGAAAAAATTGGTCAAATGACTCAATTGGATATTACAA
CATTAACATCACCAAATACAATTACAATTAATGAAACAACATTAGCATATTATGCTAAAA
CTTATTATATTGGATCATATTTAAATTCACCAGTATCAGGTGGTTTAGCAGGTGATATTC
ATCATATTAATAGTAGTGTTTGATTAGATATGATTAATACTATTCAAACCATTGTTATCG
AAXXXXXXXXXXGTCCAAGAATTTTACCACCAGATCTCGTNTACAGTTGTGCTGCAGTTT
TAATGGCTTATCTCCCAGGTAGTGAAGGTGGTAAACCAATCGCCAACATTCTCATGGGTA
ATGTAAATCCATCTGGTCGTCTTCCNTNAANTTATCCAGGTACTACTGGTNATATCGGTG
TTCCATATTACCACAAATACAGTGAAAATGGTGTCACCNCTCCACTCTTCCAATTTGGTG
ATGGTCTTTCTTATACCACTTTTAACTATACCAATCTCGCCTGTAGCAATTGTGAACCAA
TCTCTGGTCAATCTGGTAACTACANTGGTGTTTTAGGTCAATCCTATACTTTCACTGTCA
CTGTCACAAACAATGGTAACGTTCAAGGTAAAGANTNTGTTCTNTTATATCTNTCTGATC
TTTGGGCTCAAGTTANTCCAGAAGTTAAAATGTTAAGAGGTTTCCAAAAAGTTGATCTTA
TGCCAGCTAAATCTCAACAAATCTCTTTTACCCTCAATGCCTATGAATTCTCCTTTATAT
GGTGTCGATAATAAAATTACTTTAGAATCCGGTCAATTCATCATTAGAGTGGAAATCAAC
AATTA
sequence update 2002.10.25
Translated Amino Acid sequence 
xfneylikfnfiyiykkmktikslfllsllivnllisstygssirvsivggeeaeviekp
rtfgnkrelkleysqiypkkqlnqeninfmsardtfvdnlmskmsitekigqmtqlditt
ltspntitinettlayyaktyyigsylnspvsgglagdihhinssv*LDMINTIQTIVIE
---

---PRILPPDLVYSCAAVLMAYLPGSEGGKPIANILMGNVNPSGRLPXXYPGTTGXIGVP
YYHKYSENGVTXPLFQFGDGLSYTTFNYTNLACSNCEPISGQSGNYXGVLGQSYTFTVTV
TNNGNVQGKXXVLLYLSDLWAQVXPEVKMLRGFQKVDLMPAKSQQISFTLNAYEFSFIWC
R**nyfrirsihh*sgnqql
Translated Amino Acid sequence (All Frames) 
Frame A:
xismni*lnsilyiyikr*kllkvyfychc***iy**vqhmevqle*allevkklkslkn
hvlleikensn*sivkfiqrnn*ikkilisclpeilllii*cqkcqslkklvk*lnwilq
h*hhqiqlqlmkqh*himlkliildhi*ihqyqvv*qvifiilivvfd*i*lilfkplls
---

---vqefyhqisxtvvlqf*wlisqvvkvvnqsptfswvm*ihlvvfxxxiqvllvisvf
hittntvkmvsplhssnlvmvfliplltipispvaivnqslvnlvttxvf*vnpilslsl
sqtmvtfkvkxxfxyixlifglklxqklkc*evskklilcqlnlnksllpsmpmnsplyg
vdnkitlesgqfiirveinn

Frame B:
xfq*ifn*iqfyiyi*kdeny*kfiftvivdsefinkfniwkfn*skhcwr*rs*sh*kt
tyfwk*krtqirv*snlsketiksrky*fhvcqryfc**fnvknvnh*knwsndsigyyn
initkynyn**nnisilc*nllywiifkftsirwfsr*yssy***cliryd*yysnhcyr
---

---sknfttrsrxqlccsfnglspr**rw*tnrqhshg*cksiwsssxxlsryywxyrcs
ilpqiq*kwchxstlpiw*wsflyhf*lyqsrl*ql*tnlwsiw*lxwcfrsilyfhchc
hkqw*rsr*rxcsxisx*slgssxsrs*nvkrfpks*syas*istnlfypqcl*illymv
siikll*npvnsslewksti

Frame C:
xfneylikfnfiyiykkmktikslfllsllivnllisstygssirvsivggeeaeviekp
rtfgnkrelkleysqiypkkqlnqeninfmsardtfvdnlmskmsitekigqmtqlditt
ltspntitinettlayyaktyyigsylnspvsgglagdihhinssv*LDMINTIQTIVIE
---

---PRILPPDLVYSCAAVLMAYLPGSEGGKPIANILMGNVNPSGRLPXXYPGTTGXIGVP
YYHKYSENGVTXPLFQFGDGLSYTTFNYTNLACSNCEPISGQSGNYXGVLGQSYTFTVTV
TNNGNVQGKXXVLLYLSDLWAQVXPEVKMLRGFQKVDLMPAKSQQISFTLNAYEFSFIWC
R**nyfrirsihh*sgnqql
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ142 (VHQ142Q) /CSM/VH/VHQ1-B/VHQ142Q.Seq.d/                       2044   0.0
VHC215 (VHC215Q) /CSM/VH/VHC2-A/VHC215Q.Seq.d/                       1051   0.0
VHQ110 (VHQ110Q) /CSM/VH/VHQ1-A/VHQ110Q.Seq.d/                       1049   0.0
VHI124 (VHI124Q) /CSM/VH/VHI1-A/VHI124Q.Seq.d/                       1049   0.0
VHC274 (VHC274Q) /CSM/VH/VHC2-D/VHC274Q.Seq.d/                       1049   0.0
VHH688 (VHH688Q) /CSM/VH/VHH6-D/VHH688Q.Seq.d/                       1045   0.0
VHC403 (VHC403Q) /CSM/VH/VHC4-A/VHC403Q.Seq.d/                       1043   0.0
VHJ550 (VHJ550Q) /CSM/VH/VHJ5-C/VHJ550Q.Seq.d/                       1041   0.0
VHG677 (VHG677Q) /CSM/VH/VHG6-D/VHG677Q.Seq.d/                       1041   0.0
VHD344 (VHD344Q) /CSM/VH/VHD3-B/VHD344Q.Seq.d/                       1041   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446609) Dictyostelium discoideum cDNA clone:ddv63c11, 3' ...  1102   0.0    1
(L21014) Dictyostelium discoideum beta-glucosidase mRNA, com...   971   0.0    5
(BJ446533) Dictyostelium discoideum cDNA clone:ddv63c03, 3' ...   954   0.0    2
(BJ441518) Dictyostelium discoideum cDNA clone:ddv46o22, 3' ...   961   0.0    2
(BJ437723) Dictyostelium discoideum cDNA clone:ddv35m04, 3' ...   961   0.0    2
(BJ441592) Dictyostelium discoideum cDNA clone:ddv47o05, 3' ...   961   0.0    2
(BJ382310) Dictyostelium discoideum cDNA clone:ddc44g12, 3' ...   961   0.0    2
(BJ442592) Dictyostelium discoideum cDNA clone:ddv50i12, 3' ...   961   0.0    2
(BJ437912) Dictyostelium discoideum cDNA clone:ddv35c20, 3' ...   961   0.0    2
(BJ438268) Dictyostelium discoideum cDNA clone:ddv36l22, 3' ...   954   0.0    3
dna update 2008.12.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A49881(A49881)beta-glucosidase (EC 3.2.1.21) precursor, lysosoma...   314   9e-88
CP000159_2777(CP000159|pid:none) Salinibacter ruber DSM 13855, c...   108   4e-22
CP000083_2301(CP000083|pid:none) Colwellia psychrerythraea 34H, ...   101   6e-20
CP001146_680(CP001146|pid:none) Dictyoglomus thermophilum H-6-12...   100   1e-19
CP001251_792(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ...    98   5e-19
CP000388_3699(CP000388|pid:none) Pseudoalteromonas atlantica T6c...    97   8e-19
CP000383_3519(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    94   9e-18
CP000804_895(CP000804|pid:none) Roseiflexus castenholzii DSM 139...    93   2e-17
AE015928_1780(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    93   2e-17
CP000964_1565(CP000964|pid:none) Klebsiella pneumoniae 342, comp...    92   3e-17
protein update 2009. 7.22
PSORT 

 psg: 0.75  gvh: 0.64  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VHQ142 is cyt
5' end seq. ID VHQ142F
5' end seq. 
>VHQ142F.Seq
ATNATTTCAATGAATATTTAATTAAATTCAATTTTATATATATATATAAAAAGATGAAAA
CTATTAAAAGTTTATTTTTACTGTCATTGTTGATAGTGAATTTATTAATAAGTTCAACAT
ATGGAAGTTCAATTAGAGTAAGCATTGTTGGAGGTGAAGAAGCTGAAGTCATTGAAAAAC
CACGTACTTTTGGAAATAAAAGAGAACTCAAATTAGAGTATAGTCAAATTTATCCAAAGA
AACAATTAAATCAAGAAAATATTAATTTCATGTCTGCCAGAGATACTTTTGTTGATAATT
TAATGTCAAAAATGTCAATCACTGAAAAAATTGGTCAAATGACTCAATTGGATATTACAA
CATTAACATCACCAAATACAATTACAATTAATGAAACAACATTAGCATATTATGCTAAAA
CTTATTATATTGGATCATATTTAAATTCACCAGTATCAGGTGGTTTAGCAGGTGATATTC
ATCATATTAATAGTAGTGTTTGATTAGATATGATTAATACTATTCAAACCATTGTTATCG
AANNNNNNNNNN
Length of 5' end seq. 552
3' end seq. ID VHQ142Z
3' end seq. 
>VHQ142Z.Seq
NNNNNNNNNNGTCCAAGAATTTTACCACCAGATCTCGTNTACAGTTGTGCTGCAGTTTTA
ATGGCTTATCTCCCAGGTAGTGAAGGTGGTAAACCAATCGCCAACATTCTCATGGGTAAT
GTAAATCCATCTGGTCGTCTTCCNTNAANTTATCCAGGTACTACTGGTNATATCGGTGTT
CCATATTACCACAAATACAGTGAAAATGGTGTCACCNCTCCACTCTTCCAATTTGGTGAT
GGTCTTTCTTATACCACTTTTAACTATACCAATCTCGCCTGTAGCAATTGTGAACCAATC
TCTGGTCAATCTGGTAACTACANTGGTGTTTTAGGTCAATCCTATACTTTCACTGTCACT
GTCACAAACAATGGTAACGTTCAAGGTAAAGANTNTGTTCTNTTATATCTNTCTGATCTT
TGGGCTCAAGTTANTCCAGAAGTTAAAATGTTAAGAGGTTTCCAAAAAGTTGATCTTATG
CCAGCTAAATCTCAACAAATCTCTTTTACCCTCAATGCCTATGAATTCTCCTTTATATGG
TGTCGATAATAAAATTACTTTAGAATCCGGTCAATTCATCATTAGAGTGGAAATCAACAA
TTA
Length of 3' end seq. 603
Connected seq. ID VHQ142P
Connected seq. 
>VHQ142P.Seq
ATNATTTCAATGAATATTTAATTAAATTCAATTTTATATATATATATAAAAAGATGAAAA
CTATTAAAAGTTTATTTTTACTGTCATTGTTGATAGTGAATTTATTAATAAGTTCAACAT
ATGGAAGTTCAATTAGAGTAAGCATTGTTGGAGGTGAAGAAGCTGAAGTCATTGAAAAAC
CACGTACTTTTGGAAATAAAAGAGAACTCAAATTAGAGTATAGTCAAATTTATCCAAAGA
AACAATTAAATCAAGAAAATATTAATTTCATGTCTGCCAGAGATACTTTTGTTGATAATT
TAATGTCAAAAATGTCAATCACTGAAAAAATTGGTCAAATGACTCAATTGGATATTACAA
CATTAACATCACCAAATACAATTACAATTAATGAAACAACATTAGCATATTATGCTAAAA
CTTATTATATTGGATCATATTTAAATTCACCAGTATCAGGTGGTTTAGCAGGTGATATTC
ATCATATTAATAGTAGTGTTTGATTAGATATGATTAATACTATTCAAACCATTGTTATCG
AA----------GTCCAAGAATTTTACCACCAGATCTCGTNTACAGTTGTGCTGCAGTTT
TAATGGCTTATCTCCCAGGTAGTGAAGGTGGTAAACCAATCGCCAACATTCTCATGGGTA
ATGTAAATCCATCTGGTCGTCTTCCNTNAANTTATCCAGGTACTACTGGTNATATCGGTG
TTCCATATTACCACAAATACAGTGAAAATGGTGTCACCNCTCCACTCTTCCAATTTGGTG
ATGGTCTTTCTTATACCACTTTTAACTATACCAATCTCGCCTGTAGCAATTGTGAACCAA
TCTCTGGTCAATCTGGTAACTACANTGGTGTTTTAGGTCAATCCTATACTTTCACTGTCA
CTGTCACAAACAATGGTAACGTTCAAGGTAAAGANTNTGTTCTNTTATATCTNTCTGATC
TTTGGGCTCAAGTTANTCCAGAAGTTAAAATGTTAAGAGGTTTCCAAAAAGTTGATCTTA
TGCCAGCTAAATCTCAACAAATCTCTTTTACCCTCAATGCCTATGAATTCTCCTTTATAT
GGTGTCGATAATAAAATTACTTTAGAATCCGGTCAATTCATCATTAGAGTGGAAATCAAC
AATTA
Length of connected seq. 1135
Full length Seq ID -
Full length Seq. -
Length of full length seq. -