VHQ122 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHQ122
Library	VH (Link to library)
Clone ID	VHQ122 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U12398-1\|Contig-U13609-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHQ1-A/VHQ122Q.Seq.d/
Representative seq. ID	VHQ122P (Link to Original site)
Representative DNA sequence	>VHQ122 (VHQ122Q) /CSM/VH/VHQ1-A/VHQ122Q.Seq.d/ CAATTAATGATCCATCTTCAATTACTGTAGATTCAAAACTTGGATTAGCTTTTATTGGTG ACTCTGATGGTGATATTTTAGTATTTAATATGACTCTAAAAGCTAAAATTGCCATATATT CAAATTCATCAATTGCAAACTTAAGAAGTTCAGGTGTAGTTGATGAAGAGAGACAACTTT TATATATTTGTGGTCAAGCAGGTGGAATGAATTCATATATTACTCAAGTCGATATTTTCC ACTATTCAGCAACTGATATCACATTATTACATTCATTTACAATTCTTGGTTCATTATGTC CTTCAGCAGGAATTGATGTAAAAGGAGGTCAACTCTTCTTCTCTACTACAACATCATCAG GTTCTCAACTTATTGGTACTGATACAAGTGGTGGTAATACAGGTTCACTTTCTGAAAATA TAGCCAACACCCAATCAGTTGCAATTTCAGTTGATTCAATAACCAAAACAATTTCAGTTT TCTATCCAGATAGTGTTTTCTATGGTACATTTAAATCAATTTGTCCATCAGATTGTTCTG GTCATGGTGAATGTAATTATGGTACATGTGTTTGTGACCACAATTACCAAGGTCAAGGTT GTGAAGAAGAXXXXXXXXXXTCGTCTCATTCATGTACTTGTACGTATTTTAACATTTGGG TTACATTGGTGTCTTAATTGCTGCCTCATTTGCTATGGTTACACCATTACATGACTATAG AATCATCATTCCAGGTGCCATTATCTTTGTTCTCTATGGTATTGGTTTACCAATTGCCAT TTGGTTCCTTCTTGCAGTTCCAGAAGCTCGTCTCCACAATCCAACCTTTAAACAAAGATT TGGCTGTCTCTACGTTCACTACAAACCAAAGACTGATCATCGTTTCGTTGTTTTCATGTT TATCAAGAGATTCATTATGGCCGTTATCATTGGTATCTTATCATTCAAACCAATGACCAA CTATCCATTAACTGGTACTGATTTAGCCGTTCCAATCGTTCAAGTAGTTGTCATTGATAT CGCTCTCATTGGTTATGCTGTATTATTATTCATCCGTAAACCATATTTCGATCATTATCA ATTATGGCTCGAATATCTCTTAACTGCCATCAATATTGTTACAGTTTCTCTCTCACTCAC TCACATCAAATCACCAAGCGCCGCTGGTGAATTAATTGCATGTCTTATTCAAGCTTTAGC CCTTGTAGCTTGTATTGCCGCTTACGTCGTAGCATGGCTCCAAATGAGATCTTCTTTCAT TAAAAAAGTTAAGAAATATCTCTGCTGTTGTTGTAAATCCTCAAAATCTTCAGGGAAATC GATTTATCTAAGAAATAAAAATTAAANATTTATCAA
sequence update	2002.10.25
Translated Amino Acid sequence	INDPSSITVDSKLGLAFIGDSDGDILVFNMTLKAKIAIYSNSSIANLRSSGVVDEERQLL YICGQAGGMNSYITQVDIFHYSATDITLLHSFTILGSLCPSAGIDVKGGQLFFSTTTSSG SQLIGTDTSGGNTGSLSENIANTQSVAISVDSITKTISVFYPDSVFYGTFKSICPSDCSG HGECNYGTCVCDHNYQGQGCEE--- ---RLIHVLVRILTFGLHWCLNCCLICYGYTITlnhhsrchylcslwywftnchlvps cssrssspqsnltkiwlslrslqtkdssfrcfhvyqeihygryhwyliiqtndqlsin wyfsrsnrssschyrshwlcciiihptifrslsimarislnchqycysfslthshqi tkrrwincmsyssfspcslycrlrrsmapneiffhkseisllllilkifreidlsk kklxiyq
Translated Amino Acid sequence (All Frames)	Frame A: qlmihlqlliqnldlllvtlmvifylilklklpyiqihqlqtevqvlmkrdnf yifvvkqveihillksifstiqqlishyyihlqflvhyvlqqelmkevnsssllqhhq vlnllvliqvvviqvhflkiptpnqlqfqliqpkqfqfsiqivfsmvhlnqfvhqivl vmvnvimvhvfvttitkvkvvkk--- ---sshsctctyfniwvtlvsllphllwlhhymtiessfqvplslfsmvlvyqlpfgsf lqfqklvstiqplnkdlavstfttnqrliivslfsclsrdslwplslvsyhsnqptih lvlipfqsfklslislslvmlyyyssvnhisiiinygsnislpsillqflshsltsn hqaplvnlhvlfklpllvlpltshgskdllslkklrnisavvvnpqnlqgnrfi* eikikxls Frame B: n*sifnycrfktwisfywlwyfsiydsksnchifkfincklkkfrcs*rettf iylwssrwnefiyyssryfplfsnyhiitfiynswfimsfsrnckrrstlllyyniir fstywyykwwyrftfkysqhpiscnfsfnnqnnfsflsrcflwyiinlsirlfw swmlwymclpqlprsrlrr--- ---RLIHVLVRILTFGLHWCLNCCLICYGYTITlnhhsrchylcslwywftnchlvps cssrssspqsnltkiwlslrslqtkdssfrcfhvyqeihygryhwyliiqtndqlsin wyfsrsnrssschyrshwlcciiihptifrslsimarislnchqycysfslthshqi tkrrwincmsyssfspcslycrlrrsmapneiffhkseisllllilkifreidlsk kklxiyq Frame C: INDPSSITVDSKLGLAFIGDSDGDILVFNMTLKAKIAIYSNSSIANLRSSGVVDEERQLL YICGQAGGMNSYITQVDIFHYSATDITLLHSFTILGSLCPSAGIDVKGGQLFFSTTTSSG SQLIGTDTSGGNTGSLSENIANTQSVAISVDSITKTISVFYPDSVFYGTFKSICPSDCSG HGECNYGTCVCDHNYQGQGCEE--- ---vsfmylyvfhlgyigvliaasfamvtplhdyriiipgaiifvlygiglpiaiwfll avpearlhnptfkqrfgclyvhykpktdhrfvvfmfikrfimaviigilsfkpmtnyplt gtdlavpivqvvvidialigyavllfirkpyfdhyqlwleylltainivtvslslthiks psaageliacliqalalvaciaayvvawlqmrssfikkvkkylccccksskssgksiylr nkn*xfi
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHQ122 (VHQ122Q) /CSM/VH/VHQ1-A/VHQ122Q.Seq.d/ 2623 0.0 VHH579 (VHH579Q) /CSM/VH/VHH5-D/VHH579Q.Seq.d/ 1394 0.0 VHD711 (VHD711Q) /CSM/VH/VHD7-A/VHD711Q.Seq.d/ 1277 0.0 VHD222 (VHD222Q) /CSM/VH/VHD2-A/VHD222Q.Seq.d/ 1249 0.0 VHD395 (VHD395Q) /CSM/VH/VHD3-D/VHD395Q.Seq.d/ 1142 0.0 CHQ351 (CHQ351Q) /CSM/CH/CHQ3-C/CHQ351Q.Seq.d/ 1128 0.0 VHL774 (VHL774Q) /CSM/VH/VHL7-D/VHL774Q.Seq.d/ 1082 0.0 VHP302 (VHP302Q) /CSM/VH/VHP3-A/VHP302Q.Seq.d/ 1076 0.0 VHF655 (VHF655Q) /CSM/VH/VHF6-C/VHF655Q.Seq.d/ 995 0.0 VHO179 (VHO179Q) /CSM/VH/VHO1-D/VHO179Q.Seq.d/ 969 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446572) Dictyostelium discoideum cDNA clone:ddv63k05, 3' ... 1453 0.0 1 (BJ441504) Dictyostelium discoideum cDNA clone:ddv46m19, 3' ... 1300 0.0 3 (AY178767) Dictyostelium discoideum substrate adhesion molec... 1285 0.0 3 (BJ438646) Dictyostelium discoideum cDNA clone:ddv38f03, 3' ... 1277 0.0 1 (BJ427654) Dictyostelium discoideum cDNA clone:ddv63k05, 5' ... 1209 0.0 1 (BJ438511) Dictyostelium discoideum cDNA clone:ddv37k06, 3' ... 1191 0.0 2 (BJ438438) Dictyostelium discoideum cDNA clone:ddv37n23, 3' ... 1142 0.0 1 (BJ385315) Dictyostelium discoideum cDNA clone:ddc54f13, 3' ... 1092 0.0 2 (BJ443967) Dictyostelium discoideum cDNA clone:ddv54d19, 3' ... 1082 0.0 1 (BJ445909) Dictyostelium discoideum cDNA clone:ddv61d01, 3' ... 1041 0.0 2
dna update	2008.12.24
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q8I7T3) RecName: Full=Substrate-adhesion molecule; Flags: Precu... 414 e-114 AC117075_80(AC117075\|pid:none) Dictyostelium discoideum chromoso... 60 1e-07 AY650356_1(AY650356\|pid:none) Macaca fascicularis reelin mRNA, p... 49 5e-04 (P78509) RecName: Full=Reelin; EC=3.4.21.-; Flags: Prec... 48 7e-04 (Q9UMG7) RecName: Full=Tenascin-X; Short=TN-X; AltName:... 48 0.001 AL049547_2(AL049547\|pid:none) Human DNA sequence from clone RP1-... 48 0.001 S58870(S58870;S71844;I49297)reelin precursor - mouse 47 0.001 AY286489_1(AY286489\|pid:none) Danio rerio tenascin-R mRNA, compl... 47 0.001 AY704216_1(AY704216\|pid:none) Mus musculus reelin (Reln) mRNA, p... 47 0.001 (Q60841) RecName: Full=Reelin; EC=3.4.21.-; AltName: Fu... 47 0.001
protein update	2009. 7.22
PSORT	psg: 0.75 gvh: 0.54 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: cytoplasmic 36.0 %: nuclear 16.0 %: mitochondrial 4.0 %: cytoskeletal >> prediction for VHQ122 is cyt
5' end seq. ID	VHQ122F
5' end seq.	>VHQ122F.Seq CAATTAATGATCCATCTTCAATTACTGTAGATTCAAAACTTGGATTAGCTTTTATTGGTG ACTCTGATGGTGATATTTTAGTATTTAATATGACTCTAAAAGCTAAAATTGCCATATATT CAAATTCATCAATTGCAAACTTAAGAAGTTCAGGTGTAGTTGATGAAGAGAGACAACTTT TATATATTTGTGGTCAAGCAGGTGGAATGAATTCATATATTACTCAAGTCGATATTTTCC ACTATTCAGCAACTGATATCACATTATTACATTCATTTACAATTCTTGGTTCATTATGTC CTTCAGCAGGAATTGATGTAAAAGGAGGTCAACTCTTCTTCTCTACTACAACATCATCAG GTTCTCAACTTATTGGTACTGATACAAGTGGTGGTAATACAGGTTCACTTTCTGAAAATA TAGCCAACACCCAATCAGTTGCAATTTCAGTTGATTCAATAACCAAAACAATTTCAGTTT TCTATCCAGATAGTGTTTTCTATGGTACATTTAAATCAATTTGTCCATCAGATTGTTCTG GTCATGGTGAATGTAATTATGGTACATGTGTTTGTGACCACAATTACCAAGGTCAAGGTT GTGAAGAAGANNNNNNNNNN
Length of 5' end seq.	620
3' end seq. ID	VHQ122Z
3' end seq.	>VHQ122Z.Seq NNNNNNNNNNTCGTCTCATTCATGTACTTGTACGTATTTTAACATTTGGGTTACATTGGT GTCTTAATTGCTGCCTCATTTGCTATGGTTACACCATTACATGACTATAGAATCATCATT CCAGGTGCCATTATCTTTGTTCTCTATGGTATTGGTTTACCAATTGCCATTTGGTTCCTT CTTGCAGTTCCAGAAGCTCGTCTCCACAATCCAACCTTTAAACAAAGATTTGGCTGTCTC TACGTTCACTACAAACCAAAGACTGATCATCGTTTCGTTGTTTTCATGTTTATCAAGAGA TTCATTATGGCCGTTATCATTGGTATCTTATCATTCAAACCAATGACCAACTATCCATTA ACTGGTACTGATTTAGCCGTTCCAATCGTTCAAGTAGTTGTCATTGATATCGCTCTCATT GGTTATGCTGTATTATTATTCATCCGTAAACCATATTTCGATCATTATCAATTATGGCTC GAATATCTCTTAACTGCCATCAATATTGTTACAGTTTCTCTCTCACTCACTCACATCAAA TCACCAAGCGCCGCTGGTGAATTAATTGCATGTCTTATTCAAGCTTTAGCCCTTGTAGCT TGTATTGCCGCTTACGTCGTAGCATGGCTCCAAATGAGATCTTCTTTCATTAAAAAAGTT AAGAAATATCTCTGCTGTTGTTGTAAATCCTCAAAATCTTCAGGGAAATCGATTTATCTA AGAAATAAAAATTAAANATTTATCAA
Length of 3' end seq.	746
Connected seq. ID	VHQ122P
Connected seq.	>VHQ122P.Seq CAATTAATGATCCATCTTCAATTACTGTAGATTCAAAACTTGGATTAGCTTTTATTGGTG ACTCTGATGGTGATATTTTAGTATTTAATATGACTCTAAAAGCTAAAATTGCCATATATT CAAATTCATCAATTGCAAACTTAAGAAGTTCAGGTGTAGTTGATGAAGAGAGACAACTTT TATATATTTGTGGTCAAGCAGGTGGAATGAATTCATATATTACTCAAGTCGATATTTTCC ACTATTCAGCAACTGATATCACATTATTACATTCATTTACAATTCTTGGTTCATTATGTC CTTCAGCAGGAATTGATGTAAAAGGAGGTCAACTCTTCTTCTCTACTACAACATCATCAG GTTCTCAACTTATTGGTACTGATACAAGTGGTGGTAATACAGGTTCACTTTCTGAAAATA TAGCCAACACCCAATCAGTTGCAATTTCAGTTGATTCAATAACCAAAACAATTTCAGTTT TCTATCCAGATAGTGTTTTCTATGGTACATTTAAATCAATTTGTCCATCAGATTGTTCTG GTCATGGTGAATGTAATTATGGTACATGTGTTTGTGACCACAATTACCAAGGTCAAGGTT GTGAAGAAGA----------TCGTCTCATTCATGTACTTGTACGTATTTTAACATTTGGG TTACATTGGTGTCTTAATTGCTGCCTCATTTGCTATGGTTACACCATTACATGACTATAG AATCATCATTCCAGGTGCCATTATCTTTGTTCTCTATGGTATTGGTTTACCAATTGCCAT TTGGTTCCTTCTTGCAGTTCCAGAAGCTCGTCTCCACAATCCAACCTTTAAACAAAGATT TGGCTGTCTCTACGTTCACTACAAACCAAAGACTGATCATCGTTTCGTTGTTTTCATGTT TATCAAGAGATTCATTATGGCCGTTATCATTGGTATCTTATCATTCAAACCAATGACCAA CTATCCATTAACTGGTACTGATTTAGCCGTTCCAATCGTTCAAGTAGTTGTCATTGATAT CGCTCTCATTGGTTATGCTGTATTATTATTCATCCGTAAACCATATTTCGATCATTATCA ATTATGGCTCGAATATCTCTTAACTGCCATCAATATTGTTACAGTTTCTCTCTCACTCAC TCACATCAAATCACCAAGCGCCGCTGGTGAATTAATTGCATGTCTTATTCAAGCTTTAGC CCTTGTAGCTTGTATTGCCGCTTACGTCGTAGCATGGCTCCAAATGAGATCTTCTTTCAT TAAAAAAGTTAAGAAATATCTCTGCTGTTGTTGTAAATCCTCAAAATCTTCAGGGAAATC GATTTATCTAAGAAATAAAAATTAAANATTTATCAA
Length of connected seq.	1346
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas