>AFO871 (AFO871Q) /CSM/AF/AFO8-C/AFO871Q.Seq.d/
XXXXXXXXXXATCAAGCTTGTTTANATCATGGNATTTTCATTTCCAANCAAGTTAAAAAA
CNCGGNATTTTTGANATTGTTTATGATGGGACTGGNGCNCTTCCAGGNGCATGTTGGAAA
TTGAAAAAANATGCNAAAGTAAAATTCNATCTCTTTGNCCNTTCANA

---QACLXHGIFISXQVKKXGIFXIVYDGTGALPGACWKLKKXAKVKFXLFXXS

Frame A:
---sslfxswxfhfqxs*ktrxf*xcl*wdwxxsrxmleiekxcxskixslxpfx


Frame B:
---QACLXHGIFISXQVKKXGIFXIVYDGTGALPGACWKLKKXAKVKFXLFXXS


Frame C:
---klvximxfsfpxklknxxflxlfmmglxxfqxhvgn*kxmxk*nsislxxx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFO871 (AFO871Q) /CSM/AF/AFO8-C/AFO871Q.Seq.d/                        224   3e-58
AFI209 (AFI209Q) /CSM/AF/AFI2-A/AFI209Q.Seq.d/                        218   2e-56
AFL772 (AFL772Q) /CSM/AF/AFL7-C/AFL772Q.Seq.d/                        212   1e-54
AFI647 (AFI647Q) /CSM/AF/AFI6-B/AFI647Q.Seq.d/                        212   1e-54
SFL340 (SFL340Q) /CSM/SF/SFL3-B/SFL340Q.Seq.d/                        210   5e-54
SSM516 (SSM516Q) /CSM/SS/SSM5-A/SSM516Q.Seq.d/                        208   2e-53
SSK136 (SSK136Q) /CSM/SS/SSK1-B/SSK136Q.Seq.d/                        208   2e-53
SSH330 (SSH330Q) /CSM/SS/SSH3-B/SSH330Q.Seq.d/                        208   2e-53
SSF805 (SSF805Q) /CSM/SS/SSF8-A/SSF805Q.Seq.d/                        208   2e-53
SSF452 (SSF452Q) /CSM/SS/SSF4-C/SSF452Q.Seq.d/                        208   2e-53

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BZ128529|BZ128529.1 CH230-298B13.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-298B13, DNA sequence.    40  7.7  1
AC129000|AC129000.6 Rattus norvegicus clone CH230-8I1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40  7.7  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom...    42   0.008
FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ...    42   0.008
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...    37   0.26
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345...    36   0.34
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ...    36   0.34
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp...    35   0.77

 psg: 0.89  gvh: 0.46  alm: 0.44  top: 0.50  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for AFO871 is cyt

>AFO871Z.Seq
----------ATCAAGCTTGTTTANATCATGGNATTTTCATTTCCAANCAAGTTAAAAAA
CNCGGNATTTTTGANATTGTTTATGATGGGACTGGNGCNCTTCCAGGNGCATGTTGGAAA
TTGAAAAAANATGCNAAAGTAAAATTCNATCTCTTTGNCCNTTCANA