VHQ109 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHQ109
Library	VH (Link to library)
Clone ID	VHQ109 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15330-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHQ1-A/VHQ109Q.Seq.d/
Representative seq. ID	VHQ109E (Link to Original site)
Representative DNA sequence	>VHQ109 (VHQ109Q) /CSM/VH/VHQ1-A/VHQ109Q.Seq.d/ ACACACACTCACACACTTAATCATATTTATATATATATTTTTTAATTAATAAAAAATCAT ATATATATCTTATAAATTTGCTTTCATACAAATTAAAACCGTTATTATTAAATAACTTAC ATCATATAAATTTATACTTTTAGTATATCTTTTTCACTCTCATCTTTTTTTATTCCCCAT TTAAAAAATTCAAATTTAAATTGATAATTAATTAAAATTAAATTCAAAAAATGATTGTAA CTCAAATTGCTGGTAAAATTCAAGTCATCTTTGGTCCAATGTTTAGCGGAAAGACCACTG AGCTCATTAGAAGAATTAAAAGATTTAATTTTGCAAACAAAAAATGCTTATTAATTAAAT ATAGTAAAGATACTAGATATAACGATAACATTGATAAATCATTTTTAGTTACCCATGACA AACAAAATTATCAAGCTTTCCCATGTTCAATTTTAGAAGATGTTAAAGAACAAGCACAAA ACTATGATGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAATTTAGTG AAGACTTGGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAA GAAAACCATTCCAATCAGTCATTGATTTAGTATCAAAGGCTGAATATATTACAAAGTTAA CTGCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTATCGTCGAAAGTG ATGATATCGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTGCCGTGGTTGNTACA ATAGTGATCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACCGCACGTCATTCTCATT CTCAAAGCGCACCATCCGTTGCTCCACTTGCTGTAAACATTAATCCCTGATGATCATTTA AATAATA
sequence update	2002.10.28
Translated Amino Acid sequence	thshtsylyiyflinkksyiylinllsyklkplllnnlhhinlyfyifftliffyspf kkfkfkliinnIQKMIVTQIAGKIQVIFGPMFSGKTTELIRRIKRFNFANKKCLLIKY SKDTRYNDNIDKSFLVTHDKQNYQAFPCSILEDVKEQAQNYDVIGIDEGQFFPDVVQFSE DLANQGKTVIIAALDGTFQRKPFQSVIDLVSKAEYITKLTAVCMVCYNEAAFSKRIVESD DIELIGGIDKYISVCRGXYNSDQNEGNSTKPSKTARHSHSQSAPSVAPLAVNINP*sfk
Translated Amino Acid sequence (All Frames)	Frame A: ththtlnhiyiyifliknhiyilicfhtnnryyityiiiytfsisfslssffiph lknsnlnlikikfkkllkllvkfksslvqclaerplssleelkdlilqtknayln ivkildititlinhflpmtnkiiklshvqfkmlknkhktmmlvlmkanfsqtlynlv ktwqikvkpllphmvpskenhsnqsliyqrlnilqslpfvwfatmkppfqnvsskv misnlvvinifpfavvxtivikmkeivpnqakphvililkahhpllhlltlipddhl nn Frame B: htlthliifiyiffn*kiiyisykfafiqiktviikltsykfillvylfhshlflfpi kiqiidnlklnskndcnsncwnsshlwsnvrkdhahknkifckqkmlini *ryirh*iifsypqtklssfpmfnfrrcrtstklcnwyrpifprrcti rlgksrnryncrtrwylpkktipishfsikgiyykvncrlygllqsrlfktyrrk* yrinwwyriyfrlpwlxq*skrkyqtkqnrtsfsfskrtircstcckhslmii* ii Frame C: thshtsylyiyflinkksyiylinllsyklkplllnnlhhinlyfyifftliffyspf kkfkfkliinnIQKMIVTQIAGKIQVIFGPMFSGKTTELIRRIKRFNFANKKCLLIKY SKDTRYNDNIDKSFLVTHDKQNYQAFPCSILEDVKEQAQNYDVIGIDEGQFFPDVVQFSE DLANQGKTVIIAALDGTFQRKPFQSVIDLVSKAEYITKLTAVCMVCYNEAAFSKRIVESD DIELIGGIDKYISVCRGXYNSDQNEGNSTKPSKTARHSHSQSAPSVAPLAVNINP*sfk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHQ109 (VHQ109Q) /CSM/VH/VHQ1-A/VHQ109Q.Seq.d/ 1300 0.0 SLH838 (SLH838Q) /CSM/SL/SLH8-B/SLH838Q.Seq.d/ 1277 0.0 SSC346 (SSC346Q) /CSM/SS/SSC3-B/SSC346Q.Seq.d/ 1275 0.0 VSJ693 (VSJ693Q) /CSM/VS/VSJ6-D/VSJ693Q.Seq.d/ 1247 0.0 SSC741 (SSC741Q) /CSM/SS/SSC7-B/SSC741Q.Seq.d/ 1245 0.0 VSI601 (VSI601Q) /CSM/VS/VSI6-A/VSI601Q.Seq.d/ 1233 0.0 SSI374 (SSI374Q) /CSM/SS/SSI3-D/SSI374Q.Seq.d/ 1195 0.0 SSF620 (SSF620Q) /CSM/SS/SSF6-A/SSF620Q.Seq.d/ 1172 0.0 SFK520 (SFK520Q) /CSM/SF/SFK5-A/SFK520Q.Seq.d/ 1088 0.0 VFH874 (VFH874Q) /CSM/VF/VFH8-D/VFH874Q.Seq.d/ 1078 0.0
own update	2003. 1. 8
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446521) Dictyostelium discoideum cDNA clone:ddv63a03, 3' ... 1277 0.0 1 (U61990) Dictyostelium discoideum ThyB (thyB) mRNA, complete... 1235 0.0 2 (AY192984) Dictyostelium discoideum thymidine kinase 1 (TK1)... 1235 0.0 2 (AF510846) Dictyostelium discoideum calmodulin-binding prote... 1235 0.0 2 (BJ409200) Dictyostelium discoideum cDNA clone:dds39l24, 3' ... 1235 0.0 2 (AU051898) Dictyostelium discoideum slug cDNA, clone SSC346. 1227 0.0 2 (AU270331) Dictyostelium discoideum vegetative cDNA clone:VS... 1223 0.0 2 (AU268945) Dictyostelium discoideum vegetative cDNA clone:VS... 1179 0.0 1 (AU039467) Dictyostelium discoideum slug cDNA, clone SLH838. 1174 0.0 2 (C90209) Dictyostelium discoideum slug cDNA, clone SSI374. 1172 0.0 2
dna update	2008.12.23
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (P04183) RecName: Full=Thymidine kinase, cytosolic; EC=... 214 3e-54 AY335565_1(AY335565\|pid:none) Synthetic construct Homo sapiens t... 214 3e-54 BT030694_1(BT030694\|pid:none) Bos taurus thymidine kinase 1, sol... 213 5e-54 K02581_1(K02581\|pid:none) Human thymidine kinase mRNA, complete ... 213 7e-54 AB451268_1(AB451268\|pid:none) Homo sapiens TK1 mRNA for thymidin... 213 9e-54 AM905441_1(AM905441\|pid:none) Suberites domuncula mRNA for thymi... 211 2e-53 (P04184) RecName: Full=Thymidine kinase, cytosolic; EC=... 211 2e-53 (P09768) RecName: Full=Thymidine kinase, cytosolic; EC=... 211 3e-53 M11945_1(M11945\|pid:none) Mouse cytosolic thymidine kinase mRNA ... 211 4e-53 DQ441416_85(DQ441416\|pid:none) Variola virus strain Benin, Dahom... 208 2e-52
protein update	2009. 7.22
PSORT	psg: 0.88 gvh: 0.34 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.07 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 60.0 %: cytoplasmic 16.0 %: nuclear 12.0 %: mitochondrial 8.0 %: cytoskeletal 4.0 %: plasma membrane >> prediction for VHQ109 is cyt
5' end seq. ID	VHQ109F
5' end seq.	>VHQ109F.Seq ACACACACTCACACACTTAATCATATTTATATATATATTTTTTAATTAATAAAAAATCAT ATATATATCTTATAAATTTGCTTTCATACAAATTAAAACCGTTATTATTAAATAACTTAC ATCATATAAATTTATACTTTTAGTATATCTTTTTCACTCTCATCTTTTTTTATTCCCCAT TTAAAAAATTCAAATTTAAATTGATAATTAATTAAAATTAAATTCAAAAAATGATTGTAA CTCAAATTGCTGGTAAAATTCAAGTCATCTTTGGTCCAATGTTTAGCGGAAAGACCACTG AGCTCATTAGAAGAATTAAAAGATTTAATTTTGCAAACAAAAAATGCTTATTAATTAAAT ATAGTAAAGATACTAGATATAACGATAACATTGATAAATCATTTTTAGTTACCCATGACA AACAAAATTATCAAGCTTTCCCATGTTCAATTTTAGAAGATGTTAAAGAACAAGCACAAA ACTATGATGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAATTTAGTG AAGACTTGGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAA NNNNNNNNNN
Length of 5' end seq.	610
3' end seq. ID	VHQ109Z
3' end seq.	>VHQ109Z.Seq NNNNNNNNNNTTTTTTATTCCCCATTTAAAAAATTCAAATTTAAATTGATAATTAATTAA AATTAAATTCAAAAAATGATTGTAACTCAAATTGCTGGTAAAATTCAAGTCATCTTTGGT CCAATGTTTAGCGGAAAGACCACTGAGCTCATTAGAAGAATTAAAAGATTTAATTTTGCA AACAAAAAATGCTTATTAATTAAATATAGTAAAGATACTAGATATAACGATAACATTGAT AAATCATTTTTAGTTACCCATGACAAACAAAATTATCAAGCTTTCCCATGTTCAATTTTA GAAGATGTTAAAGAACAAGCACAAAACTATGATGTAATTGGTATTGATGAAGGCCAATTT TTCCCAGACGTTGTACAATTTAGTGAAGACTTGGCAAATCAAGGTAAAACCGTTATAATT GCCGCACTAGATGGTACCTTCCAAAGAAAACCATTCCAATCAGTCATTGATTTAGTATCA AAGGCTGAATATATTACAAAGTTAACTGCCGTTTGTATGGTTTGCTACAATGAAGCCGCC TTTTCAAAACGTATCGTCGAAAGTGATGATATCGAATTAATTGGTGGTATAGATAAATAT ATTTCCGTTTGCCGTGGTTGNTACAATAGTGATCAAAATGAAGGAAATAGTACCAAACCA AGCAAAACCGCACGTCATTCTCATTCTCAAAGCGCACCATCCGTTGCTCCACTTGCTGTA AACATTAATCCCTGATGATCATTTAAATAATA
Length of 3' end seq.	752
Connected seq. ID	VHQ109P
Connected seq.	>VHQ109P.Seq ACACACACTCACACACTTAATCATATTTATATATATATTTTTTAATTAATAAAAAATCAT ATATATATCTTATAAATTTGCTTTCATACAAATTAAAACCGTTATTATTAAATAACTTAC ATCATATAAATTTATACTTTTAGTATATCTTTTTCACTCTCATCTTTTTTTATTCCCCAT TTAAAAAATTCAAATTTAAATTGATAATTAATTAAAATTAAATTCAAAAAATGATTGTAA CTCAAATTGCTGGTAAAATTCAAGTCATCTTTGGTCCAATGTTTAGCGGAAAGACCACTG AGCTCATTAGAAGAATTAAAAGATTTAATTTTGCAAACAAAAAATGCTTATTAATTAAAT ATAGTAAAGATACTAGATATAACGATAACATTGATAAATCATTTTTAGTTACCCATGACA AACAAAATTATCAAGCTTTCCCATGTTCAATTTTAGAAGATGTTAAAGAACAAGCACAAA ACTATGATGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAATTTAGTG AAGACTTGGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAA ----------TTTTTTATTCCCCATTTAAAAAATTCAAATTTAAATTGATAATTAATTAA AATTAAATTCAAAAAATGATTGTAACTCAAATTGCTGGTAAAATTCAAGTCATCTTTGGT CCAATGTTTAGCGGAAAGACCACTGAGCTCATTAGAAGAATTAAAAGATTTAATTTTGCA AACAAAAAATGCTTATTAATTAAATATAGTAAAGATACTAGATATAACGATAACATTGAT AAATCATTTTTAGTTACCCATGACAAACAAAATTATCAAGCTTTCCCATGTTCAATTTTA GAAGATGTTAAAGAACAAGCACAAAACTATGATGTAATTGGTATTGATGAAGGCCAATTT TTCCCAGACGTTGTACAATTTAGTGAAGACTTGGCAAATCAAGGTAAAACCGTTATAATT GCCGCACTAGATGGTACCTTCCAAAGAAAACCATTCCAATCAGTCATTGATTTAGTATCA AAGGCTGAATATATTACAAAGTTAACTGCCGTTTGTATGGTTTGCTACAATGAAGCCGCC TTTTCAAAACGTATCGTCGAAAGTGATGATATCGAATTAATTGGTGGTATAGATAAATAT ATTTCCGTTTGCCGTGGTTGNTACAATAGTGATCAAAATGAAGGAAATAGTACCAAACCA AGCAAAACCGCACGTCATTCTCATTCTCAAAGCGCACCATCCGTTGCTCCACTTGCTGTA AACATTAATCCCTGATGATCATTTAAATAATA
Length of connected seq.	1342
Full length Seq ID	VHQ109E
Full length Seq.	>VHQ109E.Seq ACACACACTCACACACTTAATCATATTTATATATATATTTTTTAATTAATAAAAAATCAT ATATATATCTTATAAATTTGCTTTCATACAAATTAAAACCGTTATTATTAAATAACTTAC ATCATATAAATTTATACTTTTAGTATATCTTTTTCACTCTCATCTTTTTTTATTCCCCAT TTAAAAAATTCAAATTTAAATTGATAATTAATTAAAATTAAATTCAAAAAATGATTGTAA CTCAAATTGCTGGTAAAATTCAAGTCATCTTTGGTCCAATGTTTAGCGGAAAGACCACTG AGCTCATTAGAAGAATTAAAAGATTTAATTTTGCAAACAAAAAATGCTTATTAATTAAAT ATAGTAAAGATACTAGATATAACGATAACATTGATAAATCATTTTTAGTTACCCATGACA AACAAAATTATCAAGCTTTCCCATGTTCAATTTTAGAAGATGTTAAAGAACAAGCACAAA ACTATGATGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAATTTAGTG AAGACTTGGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAA GAAAACCATTCCAATCAGTCATTGATTTAGTATCAAAGGCTGAATATATTACAAAGTTAA CTGCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTATCGTCGAAAGTG ATGATATCGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTGCCGTGGTTGNTACA ATAGTGATCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACCGCACGTCATTCTCATT CTCAAAGCGCACCATCCGTTGCTCCACTTGCTGTAAACATTAATCCCTGATGATCATTTA AATAATA
Length of full length seq.	907

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas