VHQ106
Library VH
(Link to library)
Clone ID VHQ106
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15791-1
Original site URL
Representative seq. ID VHQ106P
(Link to Original site)
Representative DNA sequence
>VHQ106 (VHQ106Q) /CSM/VH/VHQ1-A/VHQ106Q.Seq.d/
GTTTAAATAGATAATAATAGTAATAATAATAATAATAATATAAAATATATATTGTAAAAT
ACTATTATTACTTTAATAAAAATGGTTGTTAAAAAACAAAAAAAATCAGAACCAATAATA
AAGGCAAAACCAACAGATCTTAAAATTATTGATAGTGGTAATAATAATAAAAACCAAGGT
TTATTAAAATATCATCCTGAAATTAATAAATTATTATTTTGTTATCCAAAGAGTAATCAA
ATTTATTATCAAAATGAAGATAAAAATATATTATTAAATACACATGGTGATGGTAGTAAA
ATTGTTACATCCATTGATTTGGGTGTTTATCATAAATGTGCAAGTTCATGTGAAGATAAT
ACAATTAATATATTTTCAACTAGTAATAATGGTAATGTAGATGTTCAAACAATTTCAGTT
CCTTCAACTCCAAATTGTATAAAATTTAATCCAACTCAATCATTTTTAGCTGTTGGTTCA
CTTAATAATATTAAATCAATTTCAATGACAAATGTTAGAGAACATCATTTAATTAAAGAT
GCACATAAAGGTGAAGTTATAACATTACAATATAGTAATGATGGTAATTATTTAGCAAGT
ATTGGTGAAGXXXXXXXXXXCTTTGCAACCAAATTCAATCAAGAGGAATTGGATGAGTAT
CAAGAGAAACAAGAAGAGATAATGTTGAAAAGGTTGGAAGAAGAAGAAGCAATTGCTAAT
GGTACTTCATTAAGTTCATCATTGGGTGGTGGTAGTAGTGGTAGTGGTGGTCCATCACAA
AGACAATTAGAGTTACAACAACAATATGCTACCAAACCAAAATCAACATTAACTTTTAAA
TCATTTGATTCGAATAATGGTACTGGTGATTGGAGCTATATAGATAAGGATGGTATCTCT
GGTGTTGCAGTATCAAAGAATTATATCATCAGTTGCTCAGAGAATGGTATTGTACGTATC
TTTAGTTTGGGTGGTATTCAATTGAATTTATTTAGTTTACCAGGTGATTTAGTTACAATG
AATACTCATGCCGATCAATTGGCAATCGTTTATCATAAATCAATATCTGGTCGTAATGGT
ACTCAATATATGAACGTTTGGTGGATTAATTTAGTCAATGGTAAACAATTCTATCATGAT
ACCCTACCATTGTCACCAAAAACAAAGAAAATTCCATTCCAAGTTAAATCAAATTCTTCA
ATTAAATCACCTGATAATGCTTCAAAAAAAAGAAAAGATACACCAACATCTAATCAACCT
TCTAAAATTTCAAAATTTAAATAATTCAAAACTTTTTCATAATAATAATAATAAATTCAT
ATCATATCATAAATTAAAGTATAATAATAAAATATGGTAAAATAAAAAGAC
sequence update 2002.10.25
Translated Amino Acid sequence
v*idnnsnnnnnnikyil*NTIITLIKMVVKKQKKSEPIIKAKPTDLKIIDSGNNNKNQG
LLKYHPEINKLLFCYPKSNQIYYQNEDKNILLNTHGDGSKIVTSIDLGVYHKCASSCEDN
TINIFSTSNNGNVDVQTISVPSTPNCIKFNPTQSFLAVGSLNNIKSISMTNVREHHLIKD
AHKGEVITLQYSNDGNYLASIGE---

---FATKFNQEELDEYQEKQEEIMLKRLEEEEAIANGTSLSSSLGGGSSGSGGPSQRQLE
LQQQYATKPKSTLTFKSFDSNNGTGDWSYIDKDGISGVAVSKNYIISCSENGIVRIFSLG
GIQLNLFSLPGDLVTMNTHADQLAIVYHKSISGRNGTQYMNVWWINLVNGKQFYHDTLPL
SPKTKKIPFQVKSNSSIKSPDNASKKRKDTPTSNQPSKISKFK*fktfs*****ihiis*
ikv***nmvk*kd


Translated Amino Acid sequence (All Frames)
Frame A:
v*idnnsnnnnnnikyil*NTIITLIKMVVKKQKKSEPIIKAKPTDLKIIDSGNNNKNQG
LLKYHPEINKLLFCYPKSNQIYYQNEDKNILLNTHGDGSKIVTSIDLGVYHKCASSCEDN
TINIFSTSNNGNVDVQTISVPSTPNCIKFNPTQSFLAVGSLNNIKSISMTNVREHHLIKD
AHKGEVITLQYSNDGNYLASIGE---

---lcnqiqsrgig*vsretrrdnvekvgrrrsnc*wyfikfiigww**w*wwsitktir
vttticyqtkininf*ii*fe*wyw*lelyr*gwylwccsikelyhqllrewyctyl*fg
wysiefi*ftr*fsyneyscrsignrls*iniws*wysiyerlvd*fsqw*tils*ypti
vtknkensips*ikffn*it**cfkkkkrytni*stf*nfki*iiqnffiiiiinsyhii
n*siiikygkikr

Frame B:
fk*iiiviiiiii*niyckillll**kwllknkknqnq**rqnqqilkllivviiiktkv
y*niilklinyyfviqrvikfiikmkikiyy*ihmvmvvkllhpliwvfiinvqvhvkii
qliyfqlvimvm*mfkqfqflqlqiv*nliqlnhf*llvhliilnqfq*qmlenii*lkm
hikvkl*hynivmmvii*qvlvk---

---FATKFNQEELDEYQEKQEEIMLKRLEEEEAIANGTSLSSSLGGGSSGSGGPSQRQLE
LQQQYATKPKSTLTFKSFDSNNGTGDWSYIDKDGISGVAVSKNYIISCSENGIVRIFSLG
GIQLNLFSLPGDLVTMNTHADQLAIVYHKSISGRNGTQYMNVWWINLVNGKQFYHDTLPL
SPKTKKIPFQVKSNSSIKSPDNASKKRKDTPTSNQPSKISKFK*fktfs*****ihiis*
ikv***nmvk*kd

Frame C:
lnr*********ykiyivkyyyyfnkngc*ktkkirtnnkgktnrs*ny**w****kprf
ikiss*n**iiillske*snllsk*r*kyiikytw*w**ncyih*fgcls*mckfm*r*y
n*yifn***w*crcsnnfssfnsklyki*snsiifscwft**y*infndkc*rtsfn*rc
t*r*syniti***w*lfskyw*---

---lqpnsikrnwmsikrnkkr*c*kgwkkkkqllmvlh*vhhwvvvvvvvvvhhkdn*s
ynnnmlpnqnqh*llnhlirimvlvigai*irmvslvlqyqriissvaqrmvlyvslvwv
vfn*iylvyqvi*lq*ilmpinwqsfiinqylvvmvlni*tfggli*smvnnsimipyhc
hqkqrkfhsklnqilqlnhlimlqkkekihqhlinllkfqnlnnsklfhnnnnkfisyhk
lkynnkiw*nkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ106 (VHQ106Q) /CSM/VH/VHQ1-A/VHQ106Q.Seq.d/ 2187 0.0
CHJ208 (CHJ208Q) /CSM/CH/CHJ2-A/CHJ208Q.Seq.d/ 1001 0.0
SHI445 (SHI445Q) /CSM/SH/SHI4-B/SHI445Q.Seq.d/ 979 0.0
SHB808 (SHB808Q) /CSM/SH/SHB8-A/SHB808Q.Seq.d/ 950 0.0
CHH509 (CHH509Q) /CSM/CH/CHH5-A/CHH509Q.Seq.d/ 940 0.0
SHE886 (SHE886Q) /CSM/SH/SHE8-D/SHE886Q.Seq.d/ 918 0.0
AHL275 (AHL275Q) /CSM/AH/AHL2-D/AHL275Q.Seq.d/ 884 0.0
AHM304 (AHM304Q) /CSM/AH/AHM3-A/AHM304Q.Seq.d/ 416 e-115
AHP226 (AHP226Q) /CSM/AH/AHP2-B/AHP226Q.Seq.d/ 163 9e-39
AHH537 (AHH537Q) /CSM/AH/AHH5-B/AHH537Q.Seq.d/ 163 9e-39

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446569) Dictyostelium discoideum cDNA clone:ddv63k01, 3' ... 1195 0.0 2
(BJ427650) Dictyostelium discoideum cDNA clone:ddv63k01, 5' ... 999 0.0 1
(BJ366772) Dictyostelium discoideum cDNA clone:ddc40o02, 5' ... 999 0.0 1
(BJ395840) Dictyostelium discoideum cDNA clone:dds40j12, 5' ... 979 0.0 1
(BJ392316) Dictyostelium discoideum cDNA clone:dds27p02, 5' ... 902 0.0 2
(BJ365899) Dictyostelium discoideum cDNA clone:ddc37a03, 5' ... 884 0.0 2
(BJ394130) Dictyostelium discoideum cDNA clone:dds33l22, 5' ... 916 0.0 1
(BJ336401) Dictyostelium discoideum cDNA clone:dda53e20, 5' ... 884 0.0 1
(BJ336770) Dictyostelium discoideum cDNA clone:dda55h01, 5' ... 414 e-111 1
(BJ354889) Dictyostelium discoideum cDNA clone:dda55h01, 3' ... 141 5e-39 2
dna update 2008.12.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CR954217_98(CR954217|pid:none) Ostreococcus tauri strain OTTH059... 59 3e-07
BC077491_1(BC077491|pid:none) Xenopus laevis WD repeat and HMG-b... 59 3e-07
(O13046) RecName: Full=WD repeat and HMG-box DNA-binding protein... 59 3e-07
BC110708_1(BC110708|pid:none) Xenopus laevis WD repeat and HMG-b... 59 4e-07
AK052690_1(AK052690|pid:none) Mus musculus 0 day neonate kidney ... 58 7e-07
(P59328) RecName: Full=WD repeat and HMG-box DNA-binding protein... 58 7e-07
BC063740_1(BC063740|pid:none) Mus musculus WD repeat and HMG-box... 58 7e-07
BC000622_1(BC000622|pid:none) Homo sapiens WD repeat and HMG-box... 54 2e-05
BC043349_1(BC043349|pid:none) Homo sapiens WD repeat and HMG-box... 54 2e-05
Z79640_2(Z79640|pid:none) Ciona intestinalis DNA sequence from c... 52 4e-05
protein update 2009. 7.21
PSORT

psg: 0.44 gvh: 0.43 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.10 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
20.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VHQ106 is cyt

5' end seq. ID VHQ106F
5' end seq.
>VHQ106F.Seq
GTTTAAATAGATAATAATAGTAATAATAATAATAATAATATAAAATATATATTGTAAAAT
ACTATTATTACTTTAATAAAAATGGTTGTTAAAAAACAAAAAAAATCAGAACCAATAATA
AAGGCAAAACCAACAGATCTTAAAATTATTGATAGTGGTAATAATAATAAAAACCAAGGT
TTATTAAAATATCATCCTGAAATTAATAAATTATTATTTTGTTATCCAAAGAGTAATCAA
ATTTATTATCAAAATGAAGATAAAAATATATTATTAAATACACATGGTGATGGTAGTAAA
ATTGTTACATCCATTGATTTGGGTGTTTATCATAAATGTGCAAGTTCATGTGAAGATAAT
ACAATTAATATATTTTCAACTAGTAATAATGGTAATGTAGATGTTCAAACAATTTCAGTT
CCTTCAACTCCAAATTGTATAAAATTTAATCCAACTCAATCATTTTTAGCTGTTGGTTCA
CTTAATAATATTAAATCAATTTCAATGACAAATGTTAGAGAACATCATTTAATTAAAGAT
GCACATAAAGGTGAAGTTATAACATTACAATATAGTAATGATGGTAATTATTTAGCAAGT
ATTGGTGAAGNNNNNNNNNN
Length of 5' end seq. 620
3' end seq. ID VHQ106Z
3' end seq.
>VHQ106Z.Seq
NNNNNNNNNNCTTTGCAACCAAATTCAATCAAGAGGAATTGGATGAGTATCAAGAGAAAC
AAGAAGAGATAATGTTGAAAAGGTTGGAAGAAGAAGAAGCAATTGCTAATGGTACTTCAT
TAAGTTCATCATTGGGTGGTGGTAGTAGTGGTAGTGGTGGTCCATCACAAAGACAATTAG
AGTTACAACAACAATATGCTACCAAACCAAAATCAACATTAACTTTTAAATCATTTGATT
CGAATAATGGTACTGGTGATTGGAGCTATATAGATAAGGATGGTATCTCTGGTGTTGCAG
TATCAAAGAATTATATCATCAGTTGCTCAGAGAATGGTATTGTACGTATCTTTAGTTTGG
GTGGTATTCAATTGAATTTATTTAGTTTACCAGGTGATTTAGTTACAATGAATACTCATG
CCGATCAATTGGCAATCGTTTATCATAAATCAATATCTGGTCGTAATGGTACTCAATATA
TGAACGTTTGGTGGATTAATTTAGTCAATGGTAAACAATTCTATCATGATACCCTACCAT
TGTCACCAAAAACAAAGAAAATTCCATTCCAAGTTAAATCAAATTCTTCAATTAAATCAC
CTGATAATGCTTCAAAAAAAAGAAAAGATACACCAACATCTAATCAACCTTCTAAAATTT
CAAAATTTAAATAATTCAAAACTTTTTCATAATAATAATAATAAATTCATATCATATCAT
AAATTAAAGTATAATAATAAAATATGGTAAAATAAAAAGAC
Length of 3' end seq. 761
Connected seq. ID VHQ106P
Connected seq.
>VHQ106P.Seq
GTTTAAATAGATAATAATAGTAATAATAATAATAATAATATAAAATATATATTGTAAAAT
ACTATTATTACTTTAATAAAAATGGTTGTTAAAAAACAAAAAAAATCAGAACCAATAATA
AAGGCAAAACCAACAGATCTTAAAATTATTGATAGTGGTAATAATAATAAAAACCAAGGT
TTATTAAAATATCATCCTGAAATTAATAAATTATTATTTTGTTATCCAAAGAGTAATCAA
ATTTATTATCAAAATGAAGATAAAAATATATTATTAAATACACATGGTGATGGTAGTAAA
ATTGTTACATCCATTGATTTGGGTGTTTATCATAAATGTGCAAGTTCATGTGAAGATAAT
ACAATTAATATATTTTCAACTAGTAATAATGGTAATGTAGATGTTCAAACAATTTCAGTT
CCTTCAACTCCAAATTGTATAAAATTTAATCCAACTCAATCATTTTTAGCTGTTGGTTCA
CTTAATAATATTAAATCAATTTCAATGACAAATGTTAGAGAACATCATTTAATTAAAGAT
GCACATAAAGGTGAAGTTATAACATTACAATATAGTAATGATGGTAATTATTTAGCAAGT
ATTGGTGAAG----------CTTTGCAACCAAATTCAATCAAGAGGAATTGGATGAGTAT
CAAGAGAAACAAGAAGAGATAATGTTGAAAAGGTTGGAAGAAGAAGAAGCAATTGCTAAT
GGTACTTCATTAAGTTCATCATTGGGTGGTGGTAGTAGTGGTAGTGGTGGTCCATCACAA
AGACAATTAGAGTTACAACAACAATATGCTACCAAACCAAAATCAACATTAACTTTTAAA
TCATTTGATTCGAATAATGGTACTGGTGATTGGAGCTATATAGATAAGGATGGTATCTCT
GGTGTTGCAGTATCAAAGAATTATATCATCAGTTGCTCAGAGAATGGTATTGTACGTATC
TTTAGTTTGGGTGGTATTCAATTGAATTTATTTAGTTTACCAGGTGATTTAGTTACAATG
AATACTCATGCCGATCAATTGGCAATCGTTTATCATAAATCAATATCTGGTCGTAATGGT
ACTCAATATATGAACGTTTGGTGGATTAATTTAGTCAATGGTAAACAATTCTATCATGAT
ACCCTACCATTGTCACCAAAAACAAAGAAAATTCCATTCCAAGTTAAATCAAATTCTTCA
ATTAAATCACCTGATAATGCTTCAAAAAAAAGAAAAGATACACCAACATCTAATCAACCT
TCTAAAATTTCAAAATTTAAATAATTCAAAACTTTTTCATAATAATAATAATAAATTCAT
ATCATATCATAAATTAAAGTATAATAATAAAATATGGTAAAATAAAAAGAC
Length of connected seq. 1361
Full length Seq ID -
Full length Seq. -
Length of full length seq. -