VHQ104
Library VH
(Link to library)
Clone ID VHQ104
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHQ104P
(Link to Original site)
Representative DNA sequence
>VHQ104 (VHQ104Q) /CSM/VH/VHQ1-A/VHQ104Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCCAGAAAAAGGTACCGTCGCXXXXX
XXXXXGTCGATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTG
GTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCC
GTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAA
TCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCT
TAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACT
CTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCAT
TATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTAC
GTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTG
GTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAG
GTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAG
TCGCACTTTNAGTTTTCAAANATAGNAATCAAATCTAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVGNTEDKEFGDVTVSPEKGTV---

---VDVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGG
QIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGS
PLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKR
KGLAPEIPDLDKFHEKL*ti*valxvfkxxnqi*kk


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklislsvellnpsmsllvtlkirnsvmslypqkkvps---

---VDVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGG
QIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGS
PLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKR
KGLAPEIPDLDKFHEKL*ti*valxvfkxxnqi*kk

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*
rslslfp*sy*irqchcw*h*r*gir*chciprkryrr---

---smspkvfni*mklkilslvlsngppkkvlfvmkt*evsvsifmmspstlmpstevvv
kssqllvvysmlln*lppqls*nqst**kllpqktllvvftlysivvevlllvknvvsvp
hyslskliyqy*npsvspliyvptlpvklshnvssiiglqlvlstkirkplksl*ppere
kv*pqksqiltnstknskqfkshfxfsxixikskk

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVGNTEDKEFGDVTVSPEKGTV---

---rchqrcsife*n*rffrwcfpmghqrrccl**kherypfqsl*chpph*chpqrwws
nhpncssctlcc*inclpnslrtnllsrnycprkrywwyllctqss*rycyw*rtsyrfp
iilcqssftsirilrfhr*ftfphcrssfptmclrslgfnwccqqr*esh*srfshqkek
rfsprnprs*qiprktlnnlsrtxsfqx*xsnlkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ104 (VHQ104Q) /CSM/VH/VHQ1-A/VHQ104Q.Seq.d/ 2452 0.0
VHQ469 (VHQ469Q) /CSM/VH/VHQ4-C/VHQ469Q.Seq.d/ 1259 0.0
VHQ438 (VHQ438Q) /CSM/VH/VHQ4-B/VHQ438Q.Seq.d/ 1259 0.0
VHQ311 (VHQ311Q) /CSM/VH/VHQ3-A/VHQ311Q.Seq.d/ 1259 0.0
VHQ248 (VHQ248Q) /CSM/VH/VHQ2-B/VHQ248Q.Seq.d/ 1259 0.0
VHQ212 (VHQ212Q) /CSM/VH/VHQ2-A/VHQ212Q.Seq.d/ 1259 0.0
VHQ208 (VHQ208Q) /CSM/VH/VHQ2-A/VHQ208Q.Seq.d/ 1259 0.0
VHQ186 (VHQ186Q) /CSM/VH/VHQ1-D/VHQ186Q.Seq.d/ 1259 0.0
VHP691 (VHP691Q) /CSM/VH/VHP6-D/VHP691Q.Seq.d/ 1259 0.0
VHP529 (VHP529Q) /CSM/VH/VHP5-B/VHP529Q.Seq.d/ 1259 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ427872) Dictyostelium discoideum cDNA clone:ddv63k21, 5' ... 1259 0.0 1
(BJ427795) Dictyostelium discoideum cDNA clone:ddv63j18, 5' ... 1259 0.0 1
(BJ427744) Dictyostelium discoideum cDNA clone:ddv63o12, 5' ... 1259 0.0 1
(BJ427728) Dictyostelium discoideum cDNA clone:ddv63l10, 5' ... 1259 0.0 1
(BJ427671) Dictyostelium discoideum cDNA clone:ddv63o02, 5' ... 1259 0.0 1
(BJ427638) Dictyostelium discoideum cDNA clone:ddv63g04, 5' ... 1259 0.0 1
(BJ427635) Dictyostelium discoideum cDNA clone:ddv63g01, 5' ... 1259 0.0 1
(BJ427632) Dictyostelium discoideum cDNA clone:ddv63f03, 5' ... 1259 0.0 1
(BJ427556) Dictyostelium discoideum cDNA clone:ddv62e24, 5' ... 1259 0.0 1
(BJ427413) Dictyostelium discoideum cDNA clone:ddv62i07, 5' ... 1259 0.0 1
dna update 2008.12.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB171046_1(AB171046|pid:none) Macaca fascicularis brain cDNA clo... 405 e-111
AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016... 283 1e-74
DQ357217_1(DQ357217|pid:none) Leishmania braziliensis elongation... 277 7e-73
AM494972_26(AM494972|pid:none) Leishmania braziliensis chromosom... 277 7e-73
CT005272_19(CT005272|pid:none) Leishmania major strain Friedlin,... 276 9e-73
(Q6FYA7) RecName: Full=Elongation factor 2; Short=EF-2;... 276 1e-72
AF248644_1(AF248644|pid:none) Filobasidiella neoformans var. neo... 275 2e-72
(Q874B9) RecName: Full=Elongation factor 2; Short=EF-2;... 275 3e-72
AF083031_87(AF083031|pid:none) Guillardia theta nucleomorph chro... 274 4e-72
AY618550_1(AY618550|pid:none) Trypanosoma cruzi elongation facto... 273 1e-71
protein update 2009. 7.21
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHQ104 is cyt

5' end seq. ID VHQ104F
5' end seq.
>VHQ104F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCCAGAAAAAGGTACCGTCGCNNNNN
NNNNN
Length of 5' end seq. 665
3' end seq. ID VHQ104Z
3' end seq.
>VHQ104Z.Seq
NNNNNNNNNNGTCGATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTT
CGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGG
TATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGG
TCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAAC
TCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTAT
TTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTC
CCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGA
TTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTC
AATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAG
AAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAAT
TTAAGTCGCACTTTNAGTTTTCAAANATAGNAATCAAATCTAAAAAAAA
Length of 3' end seq. 649
Connected seq. ID VHQ104P
Connected seq.
>VHQ104P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCCAGAAAAAGGTACCGTCGC-----
-----GTCGATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTG
GTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCC
GTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAA
TCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCT
TAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACT
CTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCAT
TATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTAC
GTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTG
GTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAG
GTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAG
TCGCACTTTNAGTTTTCAAANATAGNAATCAAATCTAAAAAAAA
Length of connected seq. 1294
Full length Seq ID -
Full length Seq. -
Length of full length seq. -