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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP877
Library VH
(Link to library)
Clone ID VHP877
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10840-1
Original site URL
Representative seq. ID VHP877P
(Link to Original site)
Representative DNA sequence 
>VHP877 (VHP877Q) /CSM/VH/VHP8-D/VHP877Q.Seq.d/
AATTTTTATAGATTTTGTTATTTTAGTCAATCAATATTGTGTGTATATGTATAATAATTG
TGTATATTAGTGTATAATATATATCTATTTTTAAACAGATCAACAATAAGAAAAAAATGA
AAAGATCAGAAAAATCAAGTACATCTGTTGTTAGTAATAACAAACAACAAGATGTAAATA
TCATCAGTTCAAATGAAGTTGGTGTTAAAGAAGAAAATAAAGGACATCAAGAATTCTTAT
TAAAAGTTTTAATTCTATCAGTCATTTATGTTTTAGCATTTTCAACTCGTTTATTCTCAG
TATTACGTTATGAAAGTGTTATTCATGAATTTGATCCATATTTTAATTATAGATCAACAA
TATATCTTGTTCAAGAAGGTTTTTATAATTTTTTAAATTGGTTTGATGAAAGAGCATGGT
ATCCATTAGGACGTATTGTAGGTGGTACAATTTACCCAGGTTTAATGGCAACAGCAAGTT
TAGTTCATTGGTCATTGAATTCATTGAATATTACAGTTAATATTAGAAATGTATGTGTAT
TGTTATCACCATGGTTTGCATCAAATACAGCAATGGTAACCTATAAAXXXXXXXXXXCTN
TACGCTTTCCATTGTACTTGGGTCACTAGTGAAGCCTACTCATCTCCATCCATTGTACTC
TCTGCCAAACAAAACGATGGTAGTCGTGTGATTTTCGATGATTTCCGTGAAGCCTACCGT
TGGATTGGTCAAAATACTGCCGACGACGCTCGTATTATGTCTTGGTGGGATTATGGTTAT
CAATTATCTGCAATGGCCAATCGTACCGTATTGGTTGATAATAATACTTGGAACAATAGT
CATATCGCTCAAGTTGGTAAAGCATTTGCATCCACTGAAGAAGATGCTTACATACAAATG
AAAGCATTGGATGTCGATTATGTTTTAGTTATTTTTGGTGGTTTAACTGGTTACAGTTCT
GATGATATCAATAAATTCCTTTGGATGGTTAGAATTGGTGGTAGTTGTGATCCAAATATT
AAAGAACAAGATTATCTCACCAATGGTCAATATAGAATAGATAAAGGTGCCTCACCAACA
ATGTTAAATTCTCTCATGTACAAACTTAGTTACTATCGTTTCTCTGAAGTTCACACTGAC
TATCAAAGACCAACAGGTTTCGATCGTGTAAGAAATGTTGAAATTGGTAATAAAAATTTC
GATTTAACTTATTTAGAAGAAGCTTTCACATCTGTTCATAGGTTAGTTAGAGTTTATAAA
GTTAAAGATTTCNNATAATAGAA
sequence update 2002.10.25
Translated Amino Acid sequence 
fl*illf*sinivciciiivyisv*YISIFKQINNKKKMKRSEKSSTSVVSNNKQQDVNI
ISSNEVGVKEENKGHQEFLLKVLILSVIYVLAFSTRLFSVLRYESVIHEFDPYFNYRSTI
YLVQEGFYNFLNWFDERAWYPLGRIVGGTIYPGLMATASLVHWSLNSLNITVNIRNVCVL
LSPWFASNTAMVTYK---

---LYAFHCTWVTSEAYSSPSIVLSAKQNDGSRVIFDDFREAYRWIGQNTADDARIMSWW
DYGYQLSAMANRTVLVDNNTWNNSHIAQVGKAFASTEEDAYIQMKALDVDYVLVIFGGLT
GYSSDDINKFLWMVRIGGSCDPNIKEQDYLTNGQYRIDKGASPTMLNSLMYKLSYYRFSE
VHTDYQRPTGFDRVRNVEIGNKNFDLTYLEEAFTSVHRLVRVYKVKDFX**
Translated Amino Acid sequence (All Frames) 
Frame A:
nfyrfcyfsqsilcvyv**lcilvyniylflnrstirkk*kdqknqvhlllvitnnkm*i
ssvqmklvlkkkikdiknsy*kf*fyqsfmf*hfqlvysqyyvmkvlfmnlihiliidqq
yilfkkvfiif*iglmkehgih*dvl*vvqftqv*wqqqv*figh*ih*ilqlilemyvy
cyhhglhqiqqw*pi---

---LYAFHCTWVTSEAYSSPSIVLSAKQNDGSRVIFDDFREAYRWIGQNTADDARIMSWW
DYGYQLSAMANRTVLVDNNTWNNSHIAQVGKAFASTEEDAYIQMKALDVDYVLVIFGGLT
GYSSDDINKFLWMVRIGGSCDPNIKEQDYLTNGQYRIDKGASPTMLNSLMYKLSYYRFSE
VHTDYQRPTGFDRVRNVEIGNKNFDLTYLEEAFTSVHRLVRVYKVKDFX**

Frame B:
ifidfvilvnqycvymynncvy*ciiyiyf*tdqq*eknekirkikyicc***qttrcky
hqfk*swc*rrk*rtsriliksfnsishlcfsifnsfilsitl*kcys*i*sif*l*inn
iscsrrfl*ffklv**ksmvsirtycrwynlprfngnskfsslviefieyys*y*kcmci
vitmvcikysngnl*---

---xtlsivlgslvkpthlhplyslpnktmvvv*fsmisvkptvglvkilpttlvlclgg
imvinylqwpivpywliiilgtivislklvkhlhplkkmltyk*khwmsimf*lflvv*l
vtvlmisinsfgwlelvvvviqilknkiispmvnie*ikvphqqc*ilsctnlvtivslk
ftltikdqqvsiv*emlklvikisi*li*kklshlfig*lefiklkisxnr

Frame C:
fl*illf*sinivciciiivyisv*YISIFKQINNKKKMKRSEKSSTSVVSNNKQQDVNI
ISSNEVGVKEENKGHQEFLLKVLILSVIYVLAFSTRLFSVLRYESVIHEFDPYFNYRSTI
YLVQEGFYNFLNWFDERAWYPLGRIVGGTIYPGLMATASLVHWSLNSLNITVNIRNVCVL
LSPWFASNTAMVTYK---

---xrfplylgh**sllisihctlcqtkrw*scdfr*fp*slpldwskycrrrsyyvlvg
lwlsiicngqsyrig***yleq*syrssw*sicih*rrclhtnesigcrlcfsyfwwfnw
lqf**yq*ipldg*nww*l*sky*rtrlshqwsi*nr*rcltnnvkfshvqt*llsfl*s
sh*lsktnrfrsckkc*nw**kfrfnlfrrsfhics*vs*sl*s*rfxiie
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP877 (VHP877Q) /CSM/VH/VHP8-D/VHP877Q.Seq.d/                       2258   0.0
VHQ247 (VHQ247Q) /CSM/VH/VHQ2-B/VHQ247Q.Seq.d/                       1314   0.0
VHQ183 (VHQ183Q) /CSM/VH/VHQ1-D/VHQ183Q.Seq.d/                       1314   0.0
VHP856 (VHP856Q) /CSM/VH/VHP8-C/VHP856Q.Seq.d/                       1314   0.0
VHO701 (VHO701Q) /CSM/VH/VHO7-A/VHO701Q.Seq.d/                       1314   0.0
VHO319 (VHO319Q) /CSM/VH/VHO3-A/VHO319Q.Seq.d/                       1314   0.0
VHJ693 (VHJ693Q) /CSM/VH/VHJ6-D/VHJ693Q.Seq.d/                       1314   0.0
VHJ440 (VHJ440Q) /CSM/VH/VHJ4-B/VHJ440Q.Seq.d/                       1314   0.0
VHI894 (VHI894Q) /CSM/VH/VHI8-D/VHI894Q.Seq.d/                       1314   0.0
VHI661 (VHI661Q) /CSM/VH/VHI6-C/VHI661Q.Seq.d/                       1314   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446483) Dictyostelium discoideum cDNA clone:ddv62j20, 3' ...  1342   0.0    1
(BJ446770) Dictyostelium discoideum cDNA clone:ddv63e21, 3' ...  1314   0.0    1
(BJ446657) Dictyostelium discoideum cDNA clone:ddv63m12, 3' ...  1314   0.0    1
(BJ446434) Dictyostelium discoideum cDNA clone:ddv62p14, 3' ...  1314   0.0    1
(BJ445595) Dictyostelium discoideum cDNA clone:ddv60b01, 3' ...  1314   0.0    1
(BJ445300) Dictyostelium discoideum cDNA clone:ddv59f05, 3' ...  1314   0.0    1
(BJ442751) Dictyostelium discoideum cDNA clone:ddv50i24, 3' ...  1314   0.0    1
(BJ442305) Dictyostelium discoideum cDNA clone:ddv49p10, 3' ...  1314   0.0    1
(BJ442123) Dictyostelium discoideum cDNA clone:ddv48l24, 3' ...  1314   0.0    1
(BJ442026) Dictyostelium discoideum cDNA clone:ddv48i16, 3' ...  1314   0.0    1
dna update 2008.12.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT064584_1(BT064584|pid:none) Zea mays full-length cDNA clone ZM...   342   1e-92
L47337_1(L47337|pid:none) Homo sapiens transmembrane protein (TM...   341   4e-92
AK295892_1(AK295892|pid:none) Homo sapiens cDNA FLJ58575 complet...   340   7e-92
CQ834708_1(CQ834708|pid:none) Sequence 579 from Patent WO2004058...   340   7e-92
AY891653_1(AY891653|pid:none) Synthetic construct Homo sapiens c...   340   7e-92
CQ834710_1(CQ834710|pid:none) Sequence 581 from Patent WO2004058...   340   7e-92
(P46977) RecName: Full=Dolichyl-diphosphooligosaccharide--protei...   340   7e-92
BC048348_1(BC048348|pid:none) Homo sapiens STT3, subunit of the ...   340   7e-92
BT044907_1(BT044907|pid:none) Salmo salar clone ssal-rgf-507-033...   339   1e-91
BC085031_1(BC085031|pid:none) Xenopus laevis similar to intergra...   339   1e-91
protein update 2009. 7.21
PSORT 

 psg: 0.22  gvh: 0.21  alm: 0.22  top: 0.53  tms: 0.07  mit: 0.36  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 28.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for VHP877 is mit
5' end seq. ID VHP877F
5' end seq. 
>VHP877F.Seq
AATTTTTATAGATTTTGTTATTTTAGTCAATCAATATTGTGTGTATATGTATAATAATTG
TGTATATTAGTGTATAATATATATCTATTTTTAAACAGATCAACAATAAGAAAAAAATGA
AAAGATCAGAAAAATCAAGTACATCTGTTGTTAGTAATAACAAACAACAAGATGTAAATA
TCATCAGTTCAAATGAAGTTGGTGTTAAAGAAGAAAATAAAGGACATCAAGAATTCTTAT
TAAAAGTTTTAATTCTATCAGTCATTTATGTTTTAGCATTTTCAACTCGTTTATTCTCAG
TATTACGTTATGAAAGTGTTATTCATGAATTTGATCCATATTTTAATTATAGATCAACAA
TATATCTTGTTCAAGAAGGTTTTTATAATTTTTTAAATTGGTTTGATGAAAGAGCATGGT
ATCCATTAGGACGTATTGTAGGTGGTACAATTTACCCAGGTTTAATGGCAACAGCAAGTT
TAGTTCATTGGTCATTGAATTCATTGAATATTACAGTTAATATTAGAAATGTATGTGTAT
TGTTATCACCATGGTTTGCATCAAATACAGCAATGGTAACCTATAAANNNNNNNNNN
Length of 5' end seq. 597
3' end seq. ID VHP877Z
3' end seq. 
>VHP877Z.Seq
NNNNNNNNNNCTNTACGCTTTCCATTGTACTTGGGTCACTAGTGAAGCCTACTCATCTCC
ATCCATTGTACTCTCTGCCAAACAAAACGATGGTAGTCGTGTGATTTTCGATGATTTCCG
TGAAGCCTACCGTTGGATTGGTCAAAATACTGCCGACGACGCTCGTATTATGTCTTGGTG
GGATTATGGTTATCAATTATCTGCAATGGCCAATCGTACCGTATTGGTTGATAATAATAC
TTGGAACAATAGTCATATCGCTCAAGTTGGTAAAGCATTTGCATCCACTGAAGAAGATGC
TTACATACAAATGAAAGCATTGGATGTCGATTATGTTTTAGTTATTTTTGGTGGTTTAAC
TGGTTACAGTTCTGATGATATCAATAAATTCCTTTGGATGGTTAGAATTGGTGGTAGTTG
TGATCCAAATATTAAAGAACAAGATTATCTCACCAATGGTCAATATAGAATAGATAAAGG
TGCCTCACCAACAATGTTAAATTCTCTCATGTACAAACTTAGTTACTATCGTTTCTCTGA
AGTTCACACTGACTATCAAAGACCAACAGGTTTCGATCGTGTAAGAAATGTTGAAATTGG
TAATAAAAATTTCGATTTAACTTATTTAGAAGAAGCTTTCACATCTGTTCATAGGTTAGT
TAGAGTTTATAAAGTTAAAGATTTCNNATAATAGAA
Length of 3' end seq. 696
Connected seq. ID VHP877P
Connected seq. 
>VHP877P.Seq
AATTTTTATAGATTTTGTTATTTTAGTCAATCAATATTGTGTGTATATGTATAATAATTG
TGTATATTAGTGTATAATATATATCTATTTTTAAACAGATCAACAATAAGAAAAAAATGA
AAAGATCAGAAAAATCAAGTACATCTGTTGTTAGTAATAACAAACAACAAGATGTAAATA
TCATCAGTTCAAATGAAGTTGGTGTTAAAGAAGAAAATAAAGGACATCAAGAATTCTTAT
TAAAAGTTTTAATTCTATCAGTCATTTATGTTTTAGCATTTTCAACTCGTTTATTCTCAG
TATTACGTTATGAAAGTGTTATTCATGAATTTGATCCATATTTTAATTATAGATCAACAA
TATATCTTGTTCAAGAAGGTTTTTATAATTTTTTAAATTGGTTTGATGAAAGAGCATGGT
ATCCATTAGGACGTATTGTAGGTGGTACAATTTACCCAGGTTTAATGGCAACAGCAAGTT
TAGTTCATTGGTCATTGAATTCATTGAATATTACAGTTAATATTAGAAATGTATGTGTAT
TGTTATCACCATGGTTTGCATCAAATACAGCAATGGTAACCTATAAA----------CTN
TACGCTTTCCATTGTACTTGGGTCACTAGTGAAGCCTACTCATCTCCATCCATTGTACTC
TCTGCCAAACAAAACGATGGTAGTCGTGTGATTTTCGATGATTTCCGTGAAGCCTACCGT
TGGATTGGTCAAAATACTGCCGACGACGCTCGTATTATGTCTTGGTGGGATTATGGTTAT
CAATTATCTGCAATGGCCAATCGTACCGTATTGGTTGATAATAATACTTGGAACAATAGT
CATATCGCTCAAGTTGGTAAAGCATTTGCATCCACTGAAGAAGATGCTTACATACAAATG
AAAGCATTGGATGTCGATTATGTTTTAGTTATTTTTGGTGGTTTAACTGGTTACAGTTCT
GATGATATCAATAAATTCCTTTGGATGGTTAGAATTGGTGGTAGTTGTGATCCAAATATT
AAAGAACAAGATTATCTCACCAATGGTCAATATAGAATAGATAAAGGTGCCTCACCAACA
ATGTTAAATTCTCTCATGTACAAACTTAGTTACTATCGTTTCTCTGAAGTTCACACTGAC
TATCAAAGACCAACAGGTTTCGATCGTGTAAGAAATGTTGAAATTGGTAATAAAAATTTC
GATTTAACTTATTTAGAAGAAGCTTTCACATCTGTTCATAGGTTAGTTAGAGTTTATAAA
GTTAAAGATTTCNNATAATAGAA
Length of connected seq. 1273
Full length Seq ID -
Full length Seq. -
Length of full length seq. -