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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP876
Library VH
(Link to library)
Clone ID VHP876
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16378-1
Original site URL
Representative seq. ID VHP876P
(Link to Original site)
Representative DNA sequence 
>VHP876 (VHP876Q) /CSM/VH/VHP8-D/VHP876Q.Seq.d/
ATTACAAACTTAAACTTTTACACATTCAGTGGATCACAACACCATACTTTTTTTTTTGTA
AATTTTTTTTCTTTAAAAAAAAATAAATAATTCTTTTTTTTAAAAAGGCTATTTTTAAAA
AATCTTTAAAATAANGAAAAATCAXXXXXXXXXXCATTTCAACCACACCAGTAAATGGTA
GTGGCAATGTTGGTCCNAACGGCACACCATTACTNTCATCGGTCCANAGTGATCNAGNTC
CANAATCACCAGTACCANCCATCGTTTCANATCATGGTNNGGTGAAAGCATTATCATTGG
AATTGGCAACTCCAACTGTACCAGAGAAATTTGTAAATGATTTCAATAACTNTAAATTAA
AAATTAACAATGTTGATNGTGGTTGTGAANCTCAAGGATTANAAAGTTTTAGTAGTAATN
TAGTAATTNAATCAAAATCTAGACCTGGTTCACCATTAANTGGTTNTGGTTCANNANGTC
CAANTCCAACTCAATTATCATTATCTGGTTNTTGTNCAAGTACAAATACTTATACTNCTT
CACCACCAACTACAAATACCACCACCACCACAACAACAGCAACAAATTCTACCACCCCCT
CTACTACTGAAGATGATAAATCNANTACAACNCCAATCACAACTACAATT
sequence update 2002.10.25
Translated Amino Acid sequence 
lqt*tfthsvdhntilffl*iffl*kkinnsff*kgyf*KIFKIXKN---

---ISTTPVNGSGNVGPNGTPLLSSVXSDXXPXSPVPXIVSXHGXVKALSLELATPTVPE
KFVNDFNNXKLKINNVDXGCEXQGLXSFSSNXVIXSKSRPGSPLXGXGSXXPXPTQLSLS
GXCXSTNTYTXSPPTTNTTTTTTTATNSTTPSTTEDDKSXTTPITTTI
Translated Amino Acid sequence (All Frames) 
Frame A:
itnlnfytfsgsqhhtfffvnffslkknk*ffflkrlflknl*nxeks---

---hfnhtskw*wqcwsxrhtitxigpx*sxsxitstxhrfxswxgesiiigignsnctr
eick*fq*l*ikn*qc*xwl*xsrixkf***xsnxiki*twftixwxwfxxsxsnsiiii
wxlxkykylyxfttnykyhhhhnnsnkfyhplyy*r**ixynxnhnyn

Frame B:
lqt*tfthsvdhntilffl*iffl*kkinnsff*kgyf*KIFKIXKN---

---ISTTPVNGSGNVGPNGTPLLSSVXSDXXPXSPVPXIVSXHGXVKALSLELATPTVPE
KFVNDFNNXKLKINNVDXGCEXQGLXSFSSNXVIXSKSRPGSPLXGXGSXXPXPTQLSLS
GXCXSTNTYTXSPPTTNTTTTTTTATNSTTPSTTEDDKSXTTPITTTI

Frame C:
yklkllhiqwittpyfffckffffkkk*iilffkkaifkkslk*xki---

---fqphq*mvvamlvxtahhyxhrsxvixxxnhqyxpsfximvx*khyhwnwqlqlyqr
nl*misitxn*kltmlxvvvxlkdxkvlvvx**xnqnldlvhh*xvxvxxvqxqlnyhyl
vxvqvqilillhhqlqippppqqqqqilppplllkminxxqxqsqlq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP876 (VHP876Q) /CSM/VH/VHP8-D/VHP876Q.Seq.d/                        817   0.0
VHN316 (VHN316Q) /CSM/VH/VHN3-A/VHN316Q.Seq.d/                        769   0.0
SFI768 (SFI768Q) /CSM/SF/SFI7-C/SFI768Q.Seq.d/                        769   0.0
VHL766 (VHL766Q) /CSM/VH/VHL7-C/VHL766Q.Seq.d/                        731   0.0
AHE890 (AHE890Q) /CSM/AH/AHE8-D/AHE890Q.Seq.d/                        196   3e-49
SLD137 (SLD137Q) /CSM/SL/SLD1-B/SLD137Q.Seq.d/                        135   9e-31
AFM594 (AFM594Q) /CSM/AF/AFM5-D/AFM594Q.Seq.d/                         88   2e-16
CFI311 (CFI311Q) /CSM/CF/CFI3-A/CFI311Q.Seq.d/                         54   3e-06
VFL262 (VFL262Q) /CSM/VF/VFL2-C/VFL262Q.Seq.d/                         48   2e-04
AHK653 (AHK653Q) /CSM/AH/AHK6-C/AHK653Q.Seq.d/                         46   7e-04
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446474) Dictyostelium discoideum cDNA clone:ddv62h20, 3' ...   617   0.0    2
(BJ402891) Dictyostelium discoideum cDNA clone:dds18h17, 3' ...   585   e-174  2
(BJ444706) Dictyostelium discoideum cDNA clone:ddv57p03, 3' ...   585   e-174  3
(BJ443902) Dictyostelium discoideum cDNA clone:ddv54d17, 3' ...   585   e-168  2
(BJ427569) Dictyostelium discoideum cDNA clone:ddv62h20, 5' ...    94   7e-15  1
(AU052319) Dictyostelium discoideum slug cDNA, clone SLD137.       90   1e-13  1
(BJ350714) Dictyostelium discoideum cDNA clone:dda40d24, 3' ...    90   1e-13  1
(BJ329964) Dictyostelium discoideum cDNA clone:dda26k23, 5' ...    88   5e-13  1
(BJ426117) Dictyostelium discoideum cDNA clone:ddv57p03, 5' ...    78   4e-10  1
(AC025930) Homo sapiens chromosome 1 clone RP11-295E21 map 1...    40   1.0    2
dna update 2008.12.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55DE7) RecName: Full=Ataxin-2 homolog;                              124   2e-27
protein update 2009. 3.18
PSORT 

 psg: 0.80  gvh: 0.49  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for VHP876 is cyt
5' end seq. ID VHP876F
5' end seq. 
>VHP876F.Seq
ATTACAAACTTAAACTTTTACACATTCAGTGGATCACAACACCATACTTTTTTTTTTGTA
AATTTTTTTTCTTTAAAAAAAAATAAATAATTCTTTTTTTTAAAAAGGCTATTTTTAAAA
AATCTTTAAAATAANGAAAAATCANNNNNNNNNN
Length of 5' end seq. 154
3' end seq. ID VHP876Z
3' end seq. 
>VHP876Z.Seq
NNNNNNNNNNCATTTCAACCACACCAGTAAATGGTAGTGGCAATGTTGGTCCNAACGGCA
CACCATTACTNTCATCGGTCCANAGTGATCNAGNTCCANAATCACCAGTACCANCCATCG
TTTCANATCATGGTNNGGTGAAAGCATTATCATTGGAATTGGCAACTCCAACTGTACCAG
AGAAATTTGTAAATGATTTCAATAACTNTAAATTAAAAATTAACAATGTTGATNGTGGTT
GTGAANCTCAAGGATTANAAAGTTTTAGTAGTAATNTAGTAATTNAATCAAAATCTAGAC
CTGGTTCACCATTAANTGGTTNTGGTTCANNANGTCCAANTCCAACTCAATTATCATTAT
CTGGTTNTTGTNCAAGTACAAATACTTATACTNCTTCACCACCAACTACAAATACCACCA
CCACCACAACAACAGCAACAAATTCTACCACCCCCTCTACTACTGAAGATGATAAATCNA
NTACAACNCCAATCACAACTACAATT
Length of 3' end seq. 506
Connected seq. ID VHP876P
Connected seq. 
>VHP876P.Seq
ATTACAAACTTAAACTTTTACACATTCAGTGGATCACAACACCATACTTTTTTTTTTGTA
AATTTTTTTTCTTTAAAAAAAAATAAATAATTCTTTTTTTTAAAAAGGCTATTTTTAAAA
AATCTTTAAAATAANGAAAAATCA----------CATTTCAACCACACCAGTAAATGGTA
GTGGCAATGTTGGTCCNAACGGCACACCATTACTNTCATCGGTCCANAGTGATCNAGNTC
CANAATCACCAGTACCANCCATCGTTTCANATCATGGTNNGGTGAAAGCATTATCATTGG
AATTGGCAACTCCAACTGTACCAGAGAAATTTGTAAATGATTTCAATAACTNTAAATTAA
AAATTAACAATGTTGATNGTGGTTGTGAANCTCAAGGATTANAAAGTTTTAGTAGTAATN
TAGTAATTNAATCAAAATCTAGACCTGGTTCACCATTAANTGGTTNTGGTTCANNANGTC
CAANTCCAACTCAATTATCATTATCTGGTTNTTGTNCAAGTACAAATACTTATACTNCTT
CACCACCAACTACAAATACCACCACCACCACAACAACAGCAACAAATTCTACCACCCCCT
CTACTACTGAAGATGATAAATCNANTACAACNCCAATCACAACTACAATT
Length of connected seq. 640
Full length Seq ID -
Full length Seq. -
Length of full length seq. -