VHP819
Library VH
(Link to library)
Clone ID VHP819
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15680-1
Original site URL
Representative seq. ID VHP819P
(Link to Original site)
Representative DNA sequence
>VHP819 (VHP819Q) /CSM/VH/VHP8-A/VHP819Q.Seq.d/
ATTTAATTTTTTTAATTAATCATAGTCAACAAAATGTGTAAATATAATGATCATAAATAT
TTAGTAGAAAAGGTAGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAAATATGAT
TTACATTTAAAACCAAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCATCACAGTT
CAAGTAAAACAACCAACAAAAACCATAACTATACATTCAATTGAAATTGAAATTCAATCA
GCTTCAATAAAATCATCATCATCATCTCAATCATCAAAATCAATTACATTTTATGAACCA
GAAGAAGTTGTCATCTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTGTTTATCA
TTGGTATTTACTGGTTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAGTATACT
GTTAAAGGTGAAGATCGTTATTTAGCAACAACTCAATTCGAAGCCACCGATGCTCGTCGT
TCTTTTCCATGTTTTGATGAACCAGCTCATAAAGCAGTTTTCAATATCACTTTAACTGTC
TCTGAATGTCATACCGCTATTTCAAATATGGAAGAAAAATCAATTACTCCAAATAATGAT
GGTACXXXXXXXXXXATCAGGTGAATCATCNTCTGACACTTTGTTAAGAAATAAAGTAAA
CTCTTATTTGGGTATTTTGGGTGACAAAGAGATTGTGGCCGAGGCTAGAAAGAGATTTGA
GCAATTCAAAGTCGACCAATCTTCTTTACCTTCCGATATCCGTTCAAGTGTTTTAGTCAC
TGTTGTAAAGAATGGTTCCGAAGCTGAACAACAAGAAATTATCAATAGATACCTCGCTTC
CAATGATATTGCAGAGAAATCAAGTTTATTGTCAGTTGTTTGCAAATCACCATCCAGTGC
ATTGGTATTGAAGGCTTTGGAATTCTCTGTCTCAAAAGATGTTAGAACTTGTGAATCCTA
TATGCTTTGGAGAGTCGGAAATGAATTTAAACCAGTAGTTTGGAAATATTTCACTGAAAA
CTTTAAATCAATCAATGAAACCTTTAATCAAAATGTTTTATTCGCTTATATGATCTCTTT
TGCTTTGTCCTCAAAAATGACTGATCAACAATTACAACAAGTTGAAGATTTCTTCAAACA
AAATCCAGTTGCAATTGCTGATCGTTCAATTAAACAAGATTTAGAACAAATTAGAAATAA
TACAAAATGGTTTAATTCATTTAATAAAGATTTATTAAATTGGATTAAAAAATAAATAAT
CTAATTTAATAAAGATTTATAAATTTGGATTTTTATAAAAAATAAAATTTATTTAATTTT
TATTATTTTTTTATTAAGTTTTATAAATAATAAAATAAATTTTCAAAT
sequence update 2002.10.25
Translated Amino Acid sequence
i*ff*LIIVNKMCKYNDHKYLVEKVDRLVLPENVVPIKYDLHLKPNLKEFTFKGEETITV
QVKQPTKTITIHSIEIEIQSASIKSSSSSQSSKSITFYEPEEVVIFEFENELSVGEYCLS
LVFTGLLNDKLKGFYRSKYTVKGEDRYLATTQFEATDARRSFPCFDEPAHKAVFNITLTV
SECHTAISNMEEKSITPNNDG---

---SGESSSDTLLRNKVNSYLGILGDKEIVAEARKRFEQFKVDQSSLPSDIRSSVLVTVV
KNGSEAEQQEIINRYLASNDIAEKSSLLSVVCKSPSSALVLKALEFSVSKDVRTCESYML
WRVGNEFKPVVWKYFTENFKSINETFNQNVLFAYMISFALSSKMTDQQLQQVEDFFKQNP
VAIADRSIKQDLEQIRNNTKWFNSFNKDLLNWIKK*ii*fnkdl*iwifiknkiylifii
fllsfinnkinfq


Translated Amino Acid sequence (All Frames)
Frame A:
i*ff*LIIVNKMCKYNDHKYLVEKVDRLVLPENVVPIKYDLHLKPNLKEFTFKGEETITV
QVKQPTKTITIHSIEIEIQSASIKSSSSSQSSKSITFYEPEEVVIFEFENELSVGEYCLS
LVFTGLLNDKLKGFYRSKYTVKGEDRYLATTQFEATDARRSFPCFDEPAHKAVFNITLTV
SECHTAISNMEEKSITPNNDG---

---ir*iix*hfvkk*skllfgyfg*qrdcgrg*kei*aiqsrpifftfrypfkcfshcc
kewfrs*ttrnyq*iprfq*ycreikfivsclqitiqcigiegfgilclkrc*nl*ilya
lesrk*i*tssleifh*kl*inq*nl*skcfirlydlfcfvlknd*stitts*rflqtks
scnc*sfn*trfrtn*k*ykmv*fi**rfikld*kinnli**rfinldfykk*nlfnfyy
ffikfyk**nkfsn

Frame B:
fnffn*s*stkcvnimiini**kr*idwyyqkmlyqlnmiyi*nqi*knlllkvkrpsqf
k*nnqqkp*lyiqlklkfnqlq*nhhhhlnhqnqlhfmnqkklsslnlkmnyqlvnivyh
wyllvy*mtn*kvsivqsillkvkivi*qqlnskppmlvvlfhvlmnqlikqfsisl*ls
lnviplfqiwkknqllqimmv---

---SGESSSDTLLRNKVNSYLGILGDKEIVAEARKRFEQFKVDQSSLPSDIRSSVLVTVV
KNGSEAEQQEIINRYLASNDIAEKSSLLSVVCKSPSSALVLKALEFSVSKDVRTCESYML
WRVGNEFKPVVWKYFTENFKSINETFNQNVLFAYMISFALSSKMTDQQLQQVEDFFKQNP
VAIADRSIKQDLEQIRNNTKWFNSFNKDLLNWIKK*ii*fnkdl*iwifiknkiylifii
fllsfinnkinfq

Frame C:
liflinhsqqnv*i**s*ifsrkgr*igitrkcctn*i*ftfktkfkriyf*r*rdhhss
skttnknhnytfn*n*nsisfnkiiiiisiikinyil*trrschl*i*k*iisw*ilfii
giywfik*qikrflsfkvyc*r*rslfsnnsirshrcssffsmf**tss*ssfqyhfncl
*msyryfkygrkinysk**wy---

---qvnhxltlc*eik*tliwvfwvtkrlwprlerdlsnskstnllylpisvqvf*sll*
rmvpklnnkklsidtslpmilqrnqvycqlfanhhpvhwy*rlwnslsqkmlelvnpicf
gesemnlnq*fgnislktlnqsmkplikmfysli*slllcpqk*linnynklkissnkiq
lqllivqlnki*nkleiiqnglihlikiy*iglknk*snlikiykfgfl*kikfi*fllf
fy*vl*iik*ifk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP819 (VHP819Q) /CSM/VH/VHP8-A/VHP819Q.Seq.d/ 1742 0.0
VHP741 (VHP741Q) /CSM/VH/VHP7-B/VHP741Q.Seq.d/ 1146 0.0
VHP256 (VHP256Q) /CSM/VH/VHP2-C/VHP256Q.Seq.d/ 1146 0.0
VHO863 (VHO863Q) /CSM/VH/VHO8-C/VHO863Q.Seq.d/ 1146 0.0
VHO805 (VHO805Q) /CSM/VH/VHO8-A/VHO805Q.Seq.d/ 1146 0.0
VHN658 (VHN658Q) /CSM/VH/VHN6-C/VHN658Q.Seq.d/ 1146 0.0
VHN267 (VHN267Q) /CSM/VH/VHN2-C/VHN267Q.Seq.d/ 1146 0.0
VHJ865 (VHJ865Q) /CSM/VH/VHJ8-C/VHJ865Q.Seq.d/ 1146 0.0
VHJ465 (VHJ465Q) /CSM/VH/VHJ4-C/VHJ465Q.Seq.d/ 1146 0.0
VHJ402 (VHJ402Q) /CSM/VH/VHJ4-A/VHJ402Q.Seq.d/ 1146 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446284) Dictyostelium discoideum cDNA clone:ddv62b11, 3' ... 1142 0.0 1
(BJ446229) Dictyostelium discoideum cDNA clone:ddv62f06, 3' ... 1142 0.0 1
(BJ446113) Dictyostelium discoideum cDNA clone:ddv61o14, 3' ... 1142 0.0 1
(BJ445800) Dictyostelium discoideum cDNA clone:ddv60n16, 3' ... 1142 0.0 1
(BJ445630) Dictyostelium discoideum cDNA clone:ddv60j02, 3' ... 1142 0.0 1
(BJ445125) Dictyostelium discoideum cDNA clone:ddv58c16, 3' ... 1142 0.0 1
(BJ444821) Dictyostelium discoideum cDNA clone:ddv57e18, 3' ... 1142 0.0 1
(BJ442634) Dictyostelium discoideum cDNA clone:ddv50b18, 3' ... 1142 0.0 1
(BJ442372) Dictyostelium discoideum cDNA clone:ddv49m14, 3' ... 1142 0.0 1
(BJ442317) Dictyostelium discoideum cDNA clone:ddv49b18, 3' ... 1142 0.0 1
dna update 2008.12.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY631393_1(AY631393|pid:none) Dictyostelium discoideum puromycin... 388 e-106
AE014296_282(AE014296|pid:none) Drosophila melanogaster chromoso... 137 1e-30
AE014296_281(AE014296|pid:none) Drosophila melanogaster chromoso... 137 1e-30
AF350242_1(AF350242|pid:none) Pichia angusta aminopeptidase gene... 136 2e-30
AF327435_1(AF327435|pid:none) Drosophila melanogaster puromycin-... 135 3e-30
(P55786) RecName: Full=Puromycin-sensitive aminopeptidase; ... 128 4e-28
FM992688_411(FM992688|pid:none) Candida dubliniensis CD36 chromo... 127 9e-28
BC098978_1(BC098978|pid:none) Xenopus laevis hypothetical protei... 127 1e-27
A65888_1(A65888|pid:none) Sequence 1 from Patent WO9738114. &Y0... 126 2e-27
AJ851657_1(AJ851657|pid:none) Gallus gallus mRNA for hypothetica... 126 2e-27
protein update 2009. 7.21
PSORT

psg: 0.53 gvh: 0.26 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VHP819 is cyt

5' end seq. ID VHP819F
5' end seq.
>VHP819F.Seq
ATTTAATTTTTTTAATTAATCATAGTCAACAAAATGTGTAAATATAATGATCATAAATAT
TTAGTAGAAAAGGTAGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAAATATGAT
TTACATTTAAAACCAAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCATCACAGTT
CAAGTAAAACAACCAACAAAAACCATAACTATACATTCAATTGAAATTGAAATTCAATCA
GCTTCAATAAAATCATCATCATCATCTCAATCATCAAAATCAATTACATTTTATGAACCA
GAAGAAGTTGTCATCTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTGTTTATCA
TTGGTATTTACTGGTTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAGTATACT
GTTAAAGGTGAAGATCGTTATTTAGCAACAACTCAATTCGAAGCCACCGATGCTCGTCGT
TCTTTTCCATGTTTTGATGAACCAGCTCATAAAGCAGTTTTCAATATCACTTTAACTGTC
TCTGAATGTCATACCGCTATTTCAAATATGGAAGAAAAATCAATTACTCCAAATAATGAT
GGTACNNNNNNNNNN
Length of 5' end seq. 615
3' end seq. ID VHP819Z
3' end seq.
>VHP819Z.Seq
NNNNNNNNNNATCAGGTGAATCATCNTCTGACACTTTGTTAAGAAATAAAGTAAACTCTT
ATTTGGGTATTTTGGGTGACAAAGAGATTGTGGCCGAGGCTAGAAAGAGATTTGAGCAAT
TCAAAGTCGACCAATCTTCTTTACCTTCCGATATCCGTTCAAGTGTTTTAGTCACTGTTG
TAAAGAATGGTTCCGAAGCTGAACAACAAGAAATTATCAATAGATACCTCGCTTCCAATG
ATATTGCAGAGAAATCAAGTTTATTGTCAGTTGTTTGCAAATCACCATCCAGTGCATTGG
TATTGAAGGCTTTGGAATTCTCTGTCTCAAAAGATGTTAGAACTTGTGAATCCTATATGC
TTTGGAGAGTCGGAAATGAATTTAAACCAGTAGTTTGGAAATATTTCACTGAAAACTTTA
AATCAATCAATGAAACCTTTAATCAAAATGTTTTATTCGCTTATATGATCTCTTTTGCTT
TGTCCTCAAAAATGACTGATCAACAATTACAACAAGTTGAAGATTTCTTCAAACAAAATC
CAGTTGCAATTGCTGATCGTTCAATTAAACAAGATTTAGAACAAATTAGAAATAATACAA
AATGGTTTAATTCATTTAATAAAGATTTATTAAATTGGATTAAAAAATAAATAATCTAAT
TTAATAAAGATTTATAAATTTGGATTTTTATAAAAAATAAAATTTATTTAATTTTTATTA
TTTTTTTATTAAGTTTTATAAATAATAAAATAAATTTTCAAAT
Length of 3' end seq. 763
Connected seq. ID VHP819P
Connected seq.
>VHP819P.Seq
ATTTAATTTTTTTAATTAATCATAGTCAACAAAATGTGTAAATATAATGATCATAAATAT
TTAGTAGAAAAGGTAGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAAATATGAT
TTACATTTAAAACCAAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCATCACAGTT
CAAGTAAAACAACCAACAAAAACCATAACTATACATTCAATTGAAATTGAAATTCAATCA
GCTTCAATAAAATCATCATCATCATCTCAATCATCAAAATCAATTACATTTTATGAACCA
GAAGAAGTTGTCATCTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTGTTTATCA
TTGGTATTTACTGGTTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAGTATACT
GTTAAAGGTGAAGATCGTTATTTAGCAACAACTCAATTCGAAGCCACCGATGCTCGTCGT
TCTTTTCCATGTTTTGATGAACCAGCTCATAAAGCAGTTTTCAATATCACTTTAACTGTC
TCTGAATGTCATACCGCTATTTCAAATATGGAAGAAAAATCAATTACTCCAAATAATGAT
GGTAC----------ATCAGGTGAATCATCNTCTGACACTTTGTTAAGAAATAAAGTAAA
CTCTTATTTGGGTATTTTGGGTGACAAAGAGATTGTGGCCGAGGCTAGAAAGAGATTTGA
GCAATTCAAAGTCGACCAATCTTCTTTACCTTCCGATATCCGTTCAAGTGTTTTAGTCAC
TGTTGTAAAGAATGGTTCCGAAGCTGAACAACAAGAAATTATCAATAGATACCTCGCTTC
CAATGATATTGCAGAGAAATCAAGTTTATTGTCAGTTGTTTGCAAATCACCATCCAGTGC
ATTGGTATTGAAGGCTTTGGAATTCTCTGTCTCAAAAGATGTTAGAACTTGTGAATCCTA
TATGCTTTGGAGAGTCGGAAATGAATTTAAACCAGTAGTTTGGAAATATTTCACTGAAAA
CTTTAAATCAATCAATGAAACCTTTAATCAAAATGTTTTATTCGCTTATATGATCTCTTT
TGCTTTGTCCTCAAAAATGACTGATCAACAATTACAACAAGTTGAAGATTTCTTCAAACA
AAATCCAGTTGCAATTGCTGATCGTTCAATTAAACAAGATTTAGAACAAATTAGAAATAA
TACAAAATGGTTTAATTCATTTAATAAAGATTTATTAAATTGGATTAAAAAATAAATAAT
CTAATTTAATAAAGATTTATAAATTTGGATTTTTATAAAAAATAAAATTTATTTAATTTT
TATTATTTTTTTATTAAGTTTTATAAATAATAAAATAAATTTTCAAAT
Length of connected seq. 1358
Full length Seq ID -
Full length Seq. -
Length of full length seq. -