>VHP816 (VHP816Q) /CSM/VH/VHP8-A/VHP816Q.Seq.d/
XXXXXXXXXXAAATACTCGTTCAGTGGTCCACCTCATCCAGAGGTNTTGAGTGCAAGTTC
AATNTCCATCGATAGTATCCTCTTGTTGGATACTTTNTTCCATGTTNTCATTTTCCATGG
TGAAACTATAGCTCAATGGAGAAAAGCTGGNTACGATAAAGATCCNCAACATCAAAACTT
TANAGACCTNTTACAAGCTCCAAGGGATGATGCTGCTCATATCCTTAAAGAACGTTTCCC
TTATCCTCGTTANATAGTTTGTGATCAACACTNTGGTGAAGCTCGTTTCCTTTTAGCAAC
TATCGATCCAAATATAACTCACACTAGTAATACNCCTCAAGATCCTTCAAAAGGTGAAAT
CGTTTTCNCTGATGATGTAAATTTACATGTCTTTTTGGAACATTTAAAAAAGTTTGCAGT
TCAATNTTAAATAATAAAAATAATAATAATAAATATAATAGTAGTAATAATAATAAAAAG
AACAATTTNTATAAAAAATATATTTTTAATAAGAGAAAAACTGCTAAAATAAAATTATCA
TCAACTACAACAACTACAACAACAACAACTACTACAACA

---YSFSGPPHPEVLSASSXSIDSILLLDTXFHVXIFHGETIAQWRKAGYDKDPQHQNFX
DLLQAPRDDAAHILKERFPYPRXIVCDQHXGEARFLLATIDPNITHTSNTPQDPSKGEIV
FXDDVNLHVFLEHLKKFAVQX*iikiiiiniivviiikrtixikniflirekllk*nyhq
lqqlqqqqllq

Frame A:
---ntrsvvhliqrx*vqvqxpsivsscwilxsmxsfsmvkl*lngeklxtikixniktl
xtxyklqgmmllislknvslilvx*fvintxvklvsf*qlsiqi*ltlvixlkilqkvks
fslmm*iymsfwni*kslqfnxk**k****i*******keqfx*kiyf**eknc*nkiii
nynnynnnnyyn


Frame B:
---ilvqwstssrgxeckfnxhr*yplvgyfxpcxhfpw*nyssmekswxr*rsxtsklx
rpxtsskg*ccsyp*rtfplsslxsl*stlw*ssfpfsnyrskynsh**yxsrsfkr*nr
fx**ckftclfgtfkkvcssxlnnknnnnkynssnnnkknnxykkyifnkrktakiklss
tttttttttttt


Frame C:
---YSFSGPPHPEVLSASSXSIDSILLLDTXFHVXIFHGETIAQWRKAGYDKDPQHQNFX
DLLQAPRDDAAHILKERFPYPRXIVCDQHXGEARFLLATIDPNITHTSNTPQDPSKGEIV
FXDDVNLHVFLEHLKKFAVQX*iikiiiiniivviiikrtixikniflirekllk*nyhq
lqqlqqqqllq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ431 (VHQ431Q) /CSM/VH/VHQ4-B/VHQ431Q.Seq.d/                        743   0.0
VHP816 (VHP816Q) /CSM/VH/VHP8-A/VHP816Q.Seq.d/                        743   0.0
VHJ512 (VHJ512Q) /CSM/VH/VHJ5-A/VHJ512Q.Seq.d/                        743   0.0
SLH727 (SLH727Q) /CSM/SL/SLH7-B/SLH727Q.Seq.d/                        743   0.0
CHR833 (CHR833Q) /CSM/CH/CHR8-B/CHR833Q.Seq.d/                        743   0.0
CHH233 (CHH233Q) /CSM/CH/CHH2-B/CHH233Q.Seq.d/                        743   0.0
AHO547 (AHO547Q) /CSM/AH/AHO5-B/AHO547Q.Seq.d/                        743   0.0
AHM815 (AHM815Q) /CSM/AH/AHM8-A/AHM815Q.Seq.d/                        743   0.0
AHJ695 (AHJ695Q) /CSM/AH/AHJ6-D/AHJ695Q.Seq.d/                        743   0.0
AHD747 (AHD747Q) /CSM/AH/AHD7-B/AHD747Q.Seq.d/                        743   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL031824|AL031824.1 S.pombe chromosome III cosmid c31H12.          66   5e-07  1
AL035263|AL035263.1 S.pombe chromosome II cosmid c776.             52   0.008  1
BI452386|BI452386.1 GI09_H07 Glomus intraradices extra-radical mycelium Glomus intraradices cDNA clone GI09_H07 3', mRNA sequence.    50   0.032  1
BF031122|BF031122.1 601558805F1 NIH_MGC_58 Homo sapiens cDNA clone IMAGE:3828577 5', mRNA sequence.    46   0.50   1
AL214985|AL214985.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 173E17 of library G from Tetraodon nigroviridis.    44   2.0    1
BF779874|BF779874.1 3243-32 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3243-32, mRNA sequence.    44   2.0    1
BD283035|BD283035.1 Flea head, nerve cord, hindgut and malpighian tubule nucleic acid molecules, proteins and uses thereof.    44   2.0    1
Z48367|Z48367.1 Caenorhabditis elegans cosmid C33B4.               44   2.0    1
CA829063|CA829063.1 1114036H09.y2 1114 - Unigene IV from Maize Genome Project Zea mays cDNA, mRNA sequence.    42   7.8    1
CD445812|CD445812.1 EL01T0203F04.b Endosperm_4 Zea mays cDNA, mRNA sequence.    42   7.8    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC153129_2(AC153129|pid:none) Medicago truncatula clone mth2-103...   136   5e-31
(Q4PE39) RecName: Full=Protein transport protein SEC23;               135   1e-30
CP001575_560(CP001575|pid:none) Micromonas sp. RCC299 chromosome...   134   2e-30
(Q5KAM7) RecName: Full=Protein transport protein SEC23;  &AE0173...   134   2e-30
AP004399_10(AP004399|pid:none) Oryza sativa Japonica Group genom...   133   3e-30
AB023036_15(AB023036|pid:none) Arabidopsis thaliana genomic DNA,...   132   9e-30
AC147484_12(AC147484|pid:none) Medicago truncatula clone mth2-52...   130   2e-29
BT033606_1(BT033606|pid:none) Zea mays full-length cDNA clone ZM...   129   6e-29
AL132858_10(AL132858|pid:none) Caenorhabditis elegans YAC Y113G7...   129   8e-29
CP000588_324(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   128   1e-28

 psg: 0.75  gvh: 0.51  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHP816 is cyt

>VHP816Z.Seq
NNNNNNNNNNAAATACTCGTTCAGTGGTCCACCTCATCCAGAGGTNTTGAGTGCAAGTTC
AATNTCCATCGATAGTATCCTCTTGTTGGATACTTTNTTCCATGTTNTCATTTTCCATGG
TGAAACTATAGCTCAATGGAGAAAAGCTGGNTACGATAAAGATCCNCAACATCAAAACTT
TANAGACCTNTTACAAGCTCCAAGGGATGATGCTGCTCATATCCTTAAAGAACGTTTCCC
TTATCCTCGTTANATAGTTTGTGATCAACACTNTGGTGAAGCTCGTTTCCTTTTAGCAAC
TATCGATCCAAATATAACTCACACTAGTAATACNCCTCAAGATCCTTCAAAAGGTGAAAT
CGTTTTCNCTGATGATGTAAATTTACATGTCTTTTTGGAACATTTAAAAAAGTTTGCAGT
TCAATNTTAAATAATAAAAATAATAATAATAAATATAATAGTAGTAATAATAATAAAAAG
AACAATTTNTATAAAAAATATATTTTTAATAAGAGAAAAACTGCTAAAATAAAATTATCA
TCAACTACAACAACTACAACAACAACAACTACTACAACA