VHP813 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHP813
Library	VH (Link to library)
Clone ID	VHP813 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U13021-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHP8-A/VHP813Q.Seq.d/
Representative seq. ID	VHP813P (Link to Original site)
Representative DNA sequence	>VHP813 (VHP813Q) /CSM/VH/VHP8-A/VHP813Q.Seq.d/ CAGTAAAGATGGTATTGTTTTCGATTTAAGACAACGTCAATCAGTAAAAGCACTCTATGA TTATTATGAAATGCGTATGTCAACTTATCCACAAAATTCAATTATTCTCTATCCATCATC GACTCATCACTCTCCATATCCATTACAAATTTACAATGCTGGTGCGTGGGCTGCCGTCGA TCTTATGTATTTCCTACCGGAAATTCCAATTACCTATATTGGTGAACAAAATGGTTGGTA CTATCATGTTGATATTCATACAAGTCGTGTAAAAGTTGGTATGTCTGCAACACCCTATCA ATTACAATATCCTCAAATTCGTGGTCATTATGCTCATCGGGTGGCACTTAGAAAATCTCA TGCTTTATTACGTCGTGGTGGTATGATTCCATTGTTATGTTACCATGCAACCGGATGGCA TGATCGTGTATTTGGTTTCGCACGTTTCTCTGGTAATGAAGTTGCAATCATTGCAATCAA CTTTGACAATACCGACACGGAATTCTATGTCGATTGTTCACCATTGGCAAAGATTTGTTC AGATGATACAATCTATAGAATGGTGGATTTAATTAATCCAAGTAATCCACCACAATATTT ATCATTGAACGAACTACTTCATGAAAAACATTTTGTAGTTGTXXXXXXXXXXATTAGAGT AAAAGAAAGAAACCAAGCAATGAAAGCAGTTTCCACCGATCATTGGAGTGCAAAGGCAGA GCTACAAAAGAAATATTTTGGATTGGTCGATAAATCAATACCAGTACTTAGTTTTTGTTG GTAGAATTGTATTACAAAAGGGTGTTCATTTAATTTTGAATGCCGTTAGAGAATTGATTG GTCATTATCAAGGTAAAATTCAAATTTTAATTGGTGGTATGGCAAATATGAAAGATCCCT ATGCAAGTAGTTGTGCTTGGTCAATGCAAGCATTGTGTAAACAATTCCCACAATCATTTT GGGCTGACCCTGATTCATTCTTTTCAGATGGTCCATTGGTTAATTTAGGCTCAGATTTTG GTTTAATGCCTTCATTATTTGAACCAAGTGGTGTTGTACAACAAGAATACTTTGTTGCTG GTACACCAGTTATCGCTTTCAAAACTGGTGGTCTAAAAGATACAGTTTTCGAATATAATA CCAACACTGAAACTGGAAATGGTTTCACTTTTGAAGCTCATAAACATACAGATTACGTTC AAGCCGTTCATCGTGCCATCAATATTTTCAATAACACTCATCATTATGAAAAAATTCGTA AATGTGCTGAAGAATCAGTTTTAGATATGTCTGTTGTTGCTGAAGCTTGGGCAAAAGAAT TCTCAAGAATGAGAAGATCAATTTGGTCAACCAATCATCAATTACAAAGACTTAATGAAA AACAATCTACTGAGGTTATTGATAATAGAGATAATCATTCATCATCAACTCAACCGTTAA ATTCTCAAATTAAACAACCACCACAACAA
sequence update	2002.10.25
Translated Amino Acid sequence	SKDGIVFDLRQRQSVKALYDYYEMRMSTYPQNSIILYPSSTHHSPYPLQIYNAGAWAAVD LMYFLPEIPITYIGEQNGWYYHVDIHTSRVKVGMSATPYQLQYPQIRGHYAHRVALRKSH ALLRRGGMIPLLCYHATGWHDRVFGFARFSGNEVAIIAINFDNTDTEFYVDCSPLAKICS DDTIYRMVDLINPSNPPQYLSLNELLHEKHFVV--- ---IRVKERNQAMKAVSTDHWSAKAELQKKYFGLVDKSIPVLSFCWncitkgcsfnfec rridwslsrnsnfnwwygkyerslcklclvnasivtiptiilgpfilfrwsig frlrfwfnafiitkwccttrilccwytsyrfqnwwskrysfriyqhnwkwfhfss* tyrlrssrsschqyfqhsslknsmcrisfryvcccslgkrilknekinlvnqssi tktktiygy**rsfiinstvkfsn*ttttt
Translated Amino Acid sequence (All Frames)	Frame A: qrwycfrfkttsiskstlllnayvnlstkfnyslsiidsslsisitnlqcwcvgcrr syvfptgnsnylywtkwlvlscysyksckswyvcntlsitissnswslcssggtkis cfitswwydsivmlpcnrmasciwfrtflwscnhcnqlqyrhgilcrlftigkdlf rynlnggfnsksttifiierttsktfcsc--- ---IRVKERNQAMKAVSTDHWSAKAELQKKYFGLVDKSIPVLSFCWncitkgcsfnfec rridwslsrnsnfnwwygkyerslcklclvnasivtiptiilgpfilfrwsig* frlrfwfnafiitkwccttrilccwytsyrfqnwwskrysfriyqhnwkwfhfss* tyrlrssrsschqyfqhsslknsmcrisfryvcccslgkrilknekinlvnqssi tktktiygy**rsfiinstvkfsnttttt Frame B: SKDGIVFDLRQRQSVKALYDYYEMRMSTYPQNSIILYPSSTHHSPYPLQIYNAGAWAAVD LMYFLPEIPITYIGEQNGWYYHVDIHTSRVKVGMSATPYQLQYPQIRGHYAHRVALRKSH ALLRRGGMIPLLCYHATGWHDRVFGFARFSGNEVAIIAINFDNTDTEFYVDCSPLAKICS DDTIYRMVDLINPSNPPQYLSLNELLHEKHFVV--- ---lekketkqkqfppiigvqrqsykrnildwsinqyqylvfvgrivlqkgvhlilna vrelighyqgkiqiliggmanmkdpyasscawsmqalckqfpqsfwadpdsffsdgplvn lgsdfglmpslfepsgvvqqeyfvagtpviafktgglkdtvfeyntntetgngftfeahk htdyvqavhrainifnnthhyekirkcaeesvldmsvvaeawakefsrmrrsiwstnhql qrlnekqstevidnrdnhssstqplnsqikqppqq Frame C: vkmvlfsidnvnqkhsmiimkcvcqlihkiqlfsihhrlitlhihykftmlvrglpsi lcisyrkfqlpilvnkmvgtimlifiqvvklvclqhpinynilkfvvimligwhlenlm lyyvvvvfhcyvtmqpdgmivylvshvslvmklqslqstltiptrnsmsivhhwqrfvq miqsiewwiliqvihhniyhtnyfmknill--- ---skrkkpsnessfhrsleckgratkeifwigrintstfllvelyykrvfifmp lenlviikvkfkflvvwqikipmqvvvlgqckhcvnnshnhfgltlihsfqmvhwli aqilvclhylnqvvlynkntlllvhqlslsklvvkiqfsniiptlklemvsllklin iqitfkpfivpsifsitliimkkfvnvlknqficllllklgqknsqeedqfgqpiiny kdlmknnllrlliieiiihhqlnrilklnnhhn
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHP813 (VHP813Q) /CSM/VH/VHP8-A/VHP813Q.Seq.d/ 2853 0.0 VHB311 (VHB311Q) /CSM/VH/VHB3-A/VHB311Q.Seq.d/ 1604 0.0 VHA879 (VHA879Q) /CSM/VH/VHA8-D/VHA879Q.Seq.d/ 1604 0.0 AFG470 (AFG470Q) /CSM/AF/AFG4-C/AFG470Q.Seq.d/ 1596 0.0 AHH349 (AHH349Q) /CSM/AH/AHH3-C/AHH349Q.Seq.d/ 1584 0.0 VHJ586 (VHJ586Q) /CSM/VH/VHJ5-D/VHJ586Q.Seq.d/ 1578 0.0 AHQ467 (AHQ467Q) /CSM/AH/AHQ4-C/AHQ467Q.Seq.d/ 1542 0.0 VHJ824 (VHJ824Q) /CSM/VH/VHJ8-A/VHJ824Q.Seq.d/ 1534 0.0 VHC850 (VHC850Q) /CSM/VH/VHC8-C/VHC850Q.Seq.d/ 1526 0.0 VHE312 (VHE312Q) /CSM/VH/VHE3-A/VHE312Q.Seq.d/ 1520 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446248) Dictyostelium discoideum cDNA clone:ddv62j04, 3' ... 1620 0.0 1 (BJ442543) Dictyostelium discoideum cDNA clone:ddv50p06, 3' ... 1534 0.0 1 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 1382 0.0 2 (BJ446262) Dictyostelium discoideum cDNA clone:ddv62m05, 3' ... 1382 0.0 2 (BJ445951) Dictyostelium discoideum cDNA clone:ddv61m02, 3' ... 1382 0.0 2 (BJ438989) Dictyostelium discoideum cDNA clone:ddv39h03, 3' ... 1382 0.0 2 (BJ437058) Dictyostelium discoideum cDNA clone:ddv33f03, 3' ... 1382 0.0 2 (BJ437017) Dictyostelium discoideum cDNA clone:ddv32n20, 3' ... 1382 0.0 2 (BJ352055) Dictyostelium discoideum cDNA clone:dda45b13, 3' ... 1382 0.0 2 (BJ342368) Dictyostelium discoideum cDNA clone:dda13l18, 3' ... 1382 0.0 2
dna update	2008.12.22
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC116979_75(AC116979\|pid:none) Dictyostelium discoideum chromoso... 450 e-125 AY123127_1(AY123127\|pid:none) Griffithsia japonica glycogen synt... 67 1e-09 CP001098_688(CP001098\|pid:none) Halothermothrix orenii H 168, co... 66 3e-09 (B2V5P9) RecName: Full=Glycogen synthase; EC=2.4.1.21; ... 64 1e-08 CP000568_1293(CP000568\|pid:none) Clostridium thermocellum ATCC 2... 63 3e-08 AL355653_1(AL355653\|pid:none) S.pombe chromosome I cosmid c1527. 62 4e-08 (Q09854) RecName: Full=Cell wall alpha-1,3-glucan synthase mok11... 62 4e-08 CU329672_494(CU329672\|pid:none) Schizosaccharomyces pombe chromo... 62 5e-08 (Q3JD12) RecName: Full=Glycogen synthase 2; EC=2.4.1.21... 62 5e-08 (Q9USK8) RecName: Full=Cell wall alpha-1,3-glucan synthase ags1;... 62 5e-08
protein update	2009. 7.21
PSORT	psg: 0.53 gvh: 0.43 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: cytoplasmic 32.0 %: nuclear 16.0 %: mitochondrial 4.0 %: vacuolar 4.0 %: vesicles of secretory system >> prediction for VHP813 is cyt
5' end seq. ID	VHP813F
5' end seq.	>VHP813F.Seq CAGTAAAGATGGTATTGTTTTCGATTTAAGACAACGTCAATCAGTAAAAGCACTCTATGA TTATTATGAAATGCGTATGTCAACTTATCCACAAAATTCAATTATTCTCTATCCATCATC GACTCATCACTCTCCATATCCATTACAAATTTACAATGCTGGTGCGTGGGCTGCCGTCGA TCTTATGTATTTCCTACCGGAAATTCCAATTACCTATATTGGTGAACAAAATGGTTGGTA CTATCATGTTGATATTCATACAAGTCGTGTAAAAGTTGGTATGTCTGCAACACCCTATCA ATTACAATATCCTCAAATTCGTGGTCATTATGCTCATCGGGTGGCACTTAGAAAATCTCA TGCTTTATTACGTCGTGGTGGTATGATTCCATTGTTATGTTACCATGCAACCGGATGGCA TGATCGTGTATTTGGTTTCGCACGTTTCTCTGGTAATGAAGTTGCAATCATTGCAATCAA CTTTGACAATACCGACACGGAATTCTATGTCGATTGTTCACCATTGGCAAAGATTTGTTC AGATGATACAATCTATAGAATGGTGGATTTAATTAATCCAAGTAATCCACCACAATATTT ATCATTGAACGAACTACTTCATGAAAAACATTTTGTAGTTGTNNNNNNNNNN
Length of 5' end seq.	652
3' end seq. ID	VHP813Z
3' end seq.	>VHP813Z.Seq NNNNNNNNNNATTAGAGTAAAAGAAAGAAACCAAGCAATGAAAGCAGTTTCCACCGATCA TTGGAGTGCAAAGGCAGAGCTACAAAAGAAATATTTTGGATTGGTCGATAAATCAATACC AGTACTTAGTTTTTGTTGGTAGAATTGTATTACAAAAGGGTGTTCATTTAATTTTGAATG CCGTTAGAGAATTGATTGGTCATTATCAAGGTAAAATTCAAATTTTAATTGGTGGTATGG CAAATATGAAAGATCCCTATGCAAGTAGTTGTGCTTGGTCAATGCAAGCATTGTGTAAAC AATTCCCACAATCATTTTGGGCTGACCCTGATTCATTCTTTTCAGATGGTCCATTGGTTA ATTTAGGCTCAGATTTTGGTTTAATGCCTTCATTATTTGAACCAAGTGGTGTTGTACAAC AAGAATACTTTGTTGCTGGTACACCAGTTATCGCTTTCAAAACTGGTGGTCTAAAAGATA CAGTTTTCGAATATAATACCAACACTGAAACTGGAAATGGTTTCACTTTTGAAGCTCATA AACATACAGATTACGTTCAAGCCGTTCATCGTGCCATCAATATTTTCAATAACACTCATC ATTATGAAAAAATTCGTAAATGTGCTGAAGAATCAGTTTTAGATATGTCTGTTGTTGCTG AAGCTTGGGCAAAAGAATTCTCAAGAATGAGAAGATCAATTTGGTCAACCAATCATCAAT TACAAAGACTTAATGAAAAACAATCTACTGAGGTTATTGATAATAGAGATAATCATTCAT CATCAACTCAACCGTTAAATTCTCAAATTAAACAACCACCACAACAA
Length of 3' end seq.	827
Connected seq. ID	VHP813P
Connected seq.	>VHP813P.Seq CAGTAAAGATGGTATTGTTTTCGATTTAAGACAACGTCAATCAGTAAAAGCACTCTATGA TTATTATGAAATGCGTATGTCAACTTATCCACAAAATTCAATTATTCTCTATCCATCATC GACTCATCACTCTCCATATCCATTACAAATTTACAATGCTGGTGCGTGGGCTGCCGTCGA TCTTATGTATTTCCTACCGGAAATTCCAATTACCTATATTGGTGAACAAAATGGTTGGTA CTATCATGTTGATATTCATACAAGTCGTGTAAAAGTTGGTATGTCTGCAACACCCTATCA ATTACAATATCCTCAAATTCGTGGTCATTATGCTCATCGGGTGGCACTTAGAAAATCTCA TGCTTTATTACGTCGTGGTGGTATGATTCCATTGTTATGTTACCATGCAACCGGATGGCA TGATCGTGTATTTGGTTTCGCACGTTTCTCTGGTAATGAAGTTGCAATCATTGCAATCAA CTTTGACAATACCGACACGGAATTCTATGTCGATTGTTCACCATTGGCAAAGATTTGTTC AGATGATACAATCTATAGAATGGTGGATTTAATTAATCCAAGTAATCCACCACAATATTT ATCATTGAACGAACTACTTCATGAAAAACATTTTGTAGTTGT----------ATTAGAGT AAAAGAAAGAAACCAAGCAATGAAAGCAGTTTCCACCGATCATTGGAGTGCAAAGGCAGA GCTACAAAAGAAATATTTTGGATTGGTCGATAAATCAATACCAGTACTTAGTTTTTGTTG GTAGAATTGTATTACAAAAGGGTGTTCATTTAATTTTGAATGCCGTTAGAGAATTGATTG GTCATTATCAAGGTAAAATTCAAATTTTAATTGGTGGTATGGCAAATATGAAAGATCCCT ATGCAAGTAGTTGTGCTTGGTCAATGCAAGCATTGTGTAAACAATTCCCACAATCATTTT GGGCTGACCCTGATTCATTCTTTTCAGATGGTCCATTGGTTAATTTAGGCTCAGATTTTG GTTTAATGCCTTCATTATTTGAACCAAGTGGTGTTGTACAACAAGAATACTTTGTTGCTG GTACACCAGTTATCGCTTTCAAAACTGGTGGTCTAAAAGATACAGTTTTCGAATATAATA CCAACACTGAAACTGGAAATGGTTTCACTTTTGAAGCTCATAAACATACAGATTACGTTC AAGCCGTTCATCGTGCCATCAATATTTTCAATAACACTCATCATTATGAAAAAATTCGTA AATGTGCTGAAGAATCAGTTTTAGATATGTCTGTTGTTGCTGAAGCTTGGGCAAAAGAAT TCTCAAGAATGAGAAGATCAATTTGGTCAACCAATCATCAATTACAAAGACTTAATGAAA AACAATCTACTGAGGTTATTGATAATAGAGATAATCATTCATCATCAACTCAACCGTTAA ATTCTCAAATTAAACAACCACCACAACAA
Length of connected seq.	1459
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas