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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP812
Library VH
(Link to library)
Clone ID VHP812
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15704-1
Original site URL
Representative seq. ID VHP812P
(Link to Original site)
Representative DNA sequence 
>VHP812 (VHP812Q) /CSM/VH/VHP8-A/VHP812Q.Seq.d/
GTATTCAAAAACAAAGTTATTAAAATCAACAACATCAAATTTTATATTATTTAATAAATT
AAAGTACAGTAGTAACAATCAAGATTTCGAGAAAAGATTTTTTAAAATGTCAGATAACAA
AACAACAACAACAACAACGACAGCTACATCAACATCAACACCAACACCATCAACATTAAA
TGATAAATCGACTATAAAAACAACTCCAATAACAGATAATAATAATAATAATGAAAATTT
TAAATATACAAATAAATTAATAAATGAAAAATCACCATATTTATTAAAACACGCTCATAA
TCCAGTTGATTGGTTGCCATGGGGAGAAGAGGCTTTTAAAATTGCAAGAGATAATGATAA
ATTAATATTTCTTAGTGTTGGTTATATGGCATGTCATTGGTGTAATGTTATGGAACGTGA
ATGTTTTGAAAATGTTGAAATTGCTAAAGTAATGAATGAATATTGTGTAAATATTAAAAT
TGACCGTGAAGAAAGACCAGATATTGATAAGATTTATATGACCTATTTAACCGAGATTAG
TGGATCAGGTGGTTGGCCGATGAGCATTTGGTTAACACCTCAATTACATCCAATCACAGG
TGGTACATATTTCGCACCAGAAGCAAAGTATGGTAGACCAGGGTTCCCTGACXXXXXXXX
XXCGATAGTGTTGGTGATGATAATGATTACGATGATGAAGACGATAAACTTAATAATTGT
AGATTAATTAGAAATTATAAAGATGGTCCATCGAAAATTCACGCATTCACAGATGATTAT
TCATTTTTAATTCAAGCATTATTGGATTTATATCAAGTTACATTTGATTATAAACATTTG
GAATGGGCAATGAAATTACAAAAACAACAAGATAATTTATTCTATGATTTAGAGAATGGT
GGTTATTACTCAACATCTGGTTTAGATAAATCAATTCTATCTAGAATGAAAGAAGAACAT
GATGGTGCTGAACCATCACCTCAATCAATTAGTGTTTCAAATTTATTAAAACTTTACTCA
ATAACCTATAATGAAGCCTATAAAGAGAAAGCAAAGAAAACCTTGGAGAATTGTTCATTA
TATTTAGAAAAGGCACCACTTGTTTTCCCACAAATGGTTTGTTCATTATATTTATACTTA
AATTCAATCAATACAATCATTCTATCAACTAATAGTAATGATAATCAACAAAAACAACAA
TTACTATCAATTCTTGATGAAATTCATTCAAATTATATACCAAATAAATTAATTCTATTA
AATGATCATTCAAATAATTCAATTACACAATTCTTTGAAAAGAGTACTTCAAATTTAAAT
TTATCACTTTCAACACCAGTTTATGATAAAACTACATTTTCATTATGTAATCCAAATGGT
TGCACAATTTCAACAAATCAATTACAACAAATTAAATCAAATTTAATAAATCAAATTTAT
CCAAAATATTAAAATTTTGTTAAATAAAAATTAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
YSKTKLLKSTTSNFILFNKLKYSSNNQDFEKRFFKMSDNKTTTTTTTATSTSTPTPSTLN
DKSTIKTTPITDNNNNNENFKYTNKLINEKSPYLLKHAHNPVDWLPWGEEAFKIARDNDK
LIFLSVGYMACHWCNVMERECFENVEIAKVMNEYCVNIKIDREERPDIDKIYMTYLTEIS
GSGGWPMSIWLTPQLHPITGGTYFAPEAKYGRPGFPD---

---DSVGDDNDYDDEDDKLNNCRLIRNYKDGPSKIHAFTDDYSFLIQALLDLYQVTFDYK
HLEWAMKLQKQQDNLFYDLENGGYYSTSGLDKSILSRMKEEHDGAEPSPQSISVSNLLKL
YSITYNEAYKEKAKKTLENCSLYLEKAPLVFPQMVCSLYLYLNSINTIILSTNSNDNQQK
QQLLSILDEIHSNYIPNKLILLNDHSNNSITQFFEKSTSNLNLSLSTPVYDKTTFSLCNP
NGCTISTNQLQQIKSNLINQIYPKY*nfvk*kln
Translated Amino Acid sequence (All Frames) 
Frame A:
vfknkvikinnikfyii**ikvq**qsrfrekif*nvr*qnnnnnndsyinintntinik
**idyknnsnnr******kf*iyk*ink*kitifiktrs*ss*lvamgrrgf*nckr***
inis*cwlygmslv*cygt*mf*kc*nc*sne*ilcky*n*p*rktry**dlydlfnrd*
wirwladehlvntsitsnhrwyifrtrskvw*trvp*---

---r*cw****lr**rr*t**l*in*kl*rwsiensrihr*lfifnssiigfissyi*l*
tfgmgneitkttr*fil*frewwlllniwfr*insi*nerrt*wc*titsin*cfkfikt
llnnl**sl*reskenlgelfiifrkgttcfptnglfiifilkfnqynhsin*****stk
ttitins**nsfklytk*insik*sfk*fnytil*keyfkfkfitfntsl**nyifim*s
kwlhnfnksittn*ikfnksnlskilkfc*ikik

Frame B:
YSKTKLLKSTTSNFILFNKLKYSSNNQDFEKRFFKMSDNKTTTTTTTATSTSTPTPSTLN
DKSTIKTTPITDNNNNNENFKYTNKLINEKSPYLLKHAHNPVDWLPWGEEAFKIARDNDK
LIFLSVGYMACHWCNVMERECFENVEIAKVMNEYCVNIKIDREERPDIDKIYMTYLTEIS
GSGGWPMSIWLTPQLHPITGGTYFAPEAKYGRPGFPD---

---DSVGDDNDYDDEDDKLNNCRLIRNYKDGPSKIHAFTDDYSFLIQALLDLYQVTFDYK
HLEWAMKLQKQQDNLFYDLENGGYYSTSGLDKSILSRMKEEHDGAEPSPQSISVSNLLKL
YSITYNEAYKEKAKKTLENCSLYLEKAPLVFPQMVCSLYLYLNSINTIILSTNSNDNQQK
QQLLSILDEIHSNYIPNKLILLNDHSNNSITQFFEKSTSNLNLSLSTPVYDKTTFSLCNP
NGCTISTNQLQQIKSNLINQIYPKY*nfvk*kln

Frame C:
iqkqsy*nqqhqilyylin*stvvtikisrkdflkcqitkqqqqqrqlhqhqhqhhqh*m
inrl*kqlq*qiiiiimkilniqin**mknhhiy*ntliiqligchgekrllklqeimin
*yflvlviwhvigvmlwnvnvlkmlkllk**mniv*ilkltvkkdqilirfi*pi*prlv
dqvvgr*afg*hlnyiqsqvvhishqkqsmvdqgsl---

---ivlvmimitmmktinliivd*leiikmvhrkfthsqmiihf*fkhywiyiklhliin
iwngq*nyknnkiiysmi*rmvvitqhlv*inqfyle*kknmmvlnhhlnqlvfqiy*nf
tq*pimkpikrkqrkpwrivhyi*krhhlfshkwfvhyiyt*iqsiqsfyqlivmiinkn
nnyyqflmkfiqiiyqin*fy*miiqiiqlhnslkrvlqi*iyhfqhqfmiklhfhyviq
mvaqfqqinynklnqi**ikfiqnikillnkn*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP812 (VHP812Q) /CSM/VH/VHP8-A/VHP812Q.Seq.d/                       2143   0.0
CHQ701 (CHQ701Q) /CSM/CH/CHQ7-A/CHQ701Q.Seq.d/                       1429   0.0
AHF763 (AHF763Q) /CSM/AH/AHF7-C/AHF763Q.Seq.d/                       1415   0.0
SHJ766 (SHJ766Q) /CSM/SH/SHJ7-C/SHJ766Q.Seq.d/                       1403   0.0
VHM532 (VHM532Q) /CSM/VH/VHM5-B/VHM532Q.Seq.d/                       1310   0.0
VHF511 (VHF511Q) /CSM/VH/VHF5-A/VHF511Q.Seq.d/                       1289   0.0
AHL888 (AHL888Q) /CSM/AH/AHL8-D/AHL888Q.Seq.d/                       1249   0.0
AHO650 (AHO650Q) /CSM/AH/AHO6-C/AHO650Q.Seq.d/                       1237   0.0
CHN762 (CHN762Q) /CSM/CH/CHN7-C/CHN762Q.Seq.d/                       1195   0.0
CHQ460 (CHQ460Q) /CSM/CH/CHQ4-C/CHQ460Q.Seq.d/                       1108   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446237) Dictyostelium discoideum cDNA clone:ddv62h04, 3' ...  1104   0.0    1
(BJ385448) Dictyostelium discoideum cDNA clone:ddc55b01, 3' ...  1104   0.0    1
(BJ351288) Dictyostelium discoideum cDNA clone:dda42n15, 3' ...  1090   0.0    1
(BJ407753) Dictyostelium discoideum cDNA clone:dds43d17, 3' ...  1078   0.0    1
(BJ439914) Dictyostelium discoideum cDNA clone:ddv42e03, 3' ...  1013   0.0    3
(BJ354851) Dictyostelium discoideum cDNA clone:dda54p22, 3' ...   924   0.0    2
(BJ356499) Dictyostelium discoideum cDNA clone:dda60c14, 3' ...   912   0.0    2
(BJ444460) Dictyostelium discoideum cDNA clone:ddv56o07, 3' ...   684   0.0    3
(BJ384490) Dictyostelium discoideum cDNA clone:ddc49l15, 3' ...   589   0.0    4
(BJ385326) Dictyostelium discoideum cDNA clone:ddc54h16, 3' ...   831   0.0    3
dna update 2008.12.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001100_1390(CP001100|pid:none) Chloroherpeton thalassium ATCC ...   204   5e-51
AE013599_1972(AE013599|pid:none) Drosophila melanogaster chromos...   201   6e-50
CP000473_7075(CP000473|pid:none) Solibacter usitatus Ellin6076, ...   200   1e-49
CP001101_1022(CP001101|pid:none) Chlorobium phaeobacteroides BS1...   196   2e-48
CP001110_1056(CP001110|pid:none) Pelodictyon phaeoclathratiforme...   193   2e-47
FJ597910_1(FJ597910|pid:none) Sus scrofa spermatogenesis associa...   190   1e-46
BC158571_1(BC158571|pid:none) Rattus norvegicus spermatogenesis ...   189   2e-46
BC065526_1(BC065526|pid:none) Homo sapiens spermatogenesis assoc...   188   4e-46
AK092731_1(AK092731|pid:none) Homo sapiens cDNA FLJ35412 fis, cl...   188   4e-46
AK291805_1(AK291805|pid:none) Homo sapiens cDNA FLJ77675 complet...   188   5e-46
protein update 2009. 7.21
PSORT 

 psg: 0.87  gvh: 0.31  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for VHP812 is cyt
5' end seq. ID VHP812F
5' end seq. 
>VHP812F.Seq
GTATTCAAAAACAAAGTTATTAAAATCAACAACATCAAATTTTATATTATTTAATAAATT
AAAGTACAGTAGTAACAATCAAGATTTCGAGAAAAGATTTTTTAAAATGTCAGATAACAA
AACAACAACAACAACAACGACAGCTACATCAACATCAACACCAACACCATCAACATTAAA
TGATAAATCGACTATAAAAACAACTCCAATAACAGATAATAATAATAATAATGAAAATTT
TAAATATACAAATAAATTAATAAATGAAAAATCACCATATTTATTAAAACACGCTCATAA
TCCAGTTGATTGGTTGCCATGGGGAGAAGAGGCTTTTAAAATTGCAAGAGATAATGATAA
ATTAATATTTCTTAGTGTTGGTTATATGGCATGTCATTGGTGTAATGTTATGGAACGTGA
ATGTTTTGAAAATGTTGAAATTGCTAAAGTAATGAATGAATATTGTGTAAATATTAAAAT
TGACCGTGAAGAAAGACCAGATATTGATAAGATTTATATGACCTATTTAACCGAGATTAG
TGGATCAGGTGGTTGGCCGATGAGCATTTGGTTAACACCTCAATTACATCCAATCACAGG
TGGTACATATTTCGCACCAGAAGCAAAGTATGGTAGACCAGGGTTCCCTGACNNNNNNNN
NN
Length of 5' end seq. 662
3' end seq. ID VHP812Z
3' end seq. 
>VHP812Z.Seq
NNNNNNNNNNCGATAGTGTTGGTGATGATAATGATTACGATGATGAAGACGATAAACTTA
ATAATTGTAGATTAATTAGAAATTATAAAGATGGTCCATCGAAAATTCACGCATTCACAG
ATGATTATTCATTTTTAATTCAAGCATTATTGGATTTATATCAAGTTACATTTGATTATA
AACATTTGGAATGGGCAATGAAATTACAAAAACAACAAGATAATTTATTCTATGATTTAG
AGAATGGTGGTTATTACTCAACATCTGGTTTAGATAAATCAATTCTATCTAGAATGAAAG
AAGAACATGATGGTGCTGAACCATCACCTCAATCAATTAGTGTTTCAAATTTATTAAAAC
TTTACTCAATAACCTATAATGAAGCCTATAAAGAGAAAGCAAAGAAAACCTTGGAGAATT
GTTCATTATATTTAGAAAAGGCACCACTTGTTTTCCCACAAATGGTTTGTTCATTATATT
TATACTTAAATTCAATCAATACAATCATTCTATCAACTAATAGTAATGATAATCAACAAA
AACAACAATTACTATCAATTCTTGATGAAATTCATTCAAATTATATACCAAATAAATTAA
TTCTATTAAATGATCATTCAAATAATTCAATTACACAATTCTTTGAAAAGAGTACTTCAA
ATTTAAATTTATCACTTTCAACACCAGTTTATGATAAAACTACATTTTCATTATGTAATC
CAAATGGTTGCACAATTTCAACAAATCAATTACAACAAATTAAATCAAATTTAATAAATC
AAATTTATCCAAAATATTAAAATTTTGTTAAATAAAAATTAAAT
Length of 3' end seq. 824
Connected seq. ID VHP812P
Connected seq. 
>VHP812P.Seq
GTATTCAAAAACAAAGTTATTAAAATCAACAACATCAAATTTTATATTATTTAATAAATT
AAAGTACAGTAGTAACAATCAAGATTTCGAGAAAAGATTTTTTAAAATGTCAGATAACAA
AACAACAACAACAACAACGACAGCTACATCAACATCAACACCAACACCATCAACATTAAA
TGATAAATCGACTATAAAAACAACTCCAATAACAGATAATAATAATAATAATGAAAATTT
TAAATATACAAATAAATTAATAAATGAAAAATCACCATATTTATTAAAACACGCTCATAA
TCCAGTTGATTGGTTGCCATGGGGAGAAGAGGCTTTTAAAATTGCAAGAGATAATGATAA
ATTAATATTTCTTAGTGTTGGTTATATGGCATGTCATTGGTGTAATGTTATGGAACGTGA
ATGTTTTGAAAATGTTGAAATTGCTAAAGTAATGAATGAATATTGTGTAAATATTAAAAT
TGACCGTGAAGAAAGACCAGATATTGATAAGATTTATATGACCTATTTAACCGAGATTAG
TGGATCAGGTGGTTGGCCGATGAGCATTTGGTTAACACCTCAATTACATCCAATCACAGG
TGGTACATATTTCGCACCAGAAGCAAAGTATGGTAGACCAGGGTTCCCTGAC--------
--CGATAGTGTTGGTGATGATAATGATTACGATGATGAAGACGATAAACTTAATAATTGT
AGATTAATTAGAAATTATAAAGATGGTCCATCGAAAATTCACGCATTCACAGATGATTAT
TCATTTTTAATTCAAGCATTATTGGATTTATATCAAGTTACATTTGATTATAAACATTTG
GAATGGGCAATGAAATTACAAAAACAACAAGATAATTTATTCTATGATTTAGAGAATGGT
GGTTATTACTCAACATCTGGTTTAGATAAATCAATTCTATCTAGAATGAAAGAAGAACAT
GATGGTGCTGAACCATCACCTCAATCAATTAGTGTTTCAAATTTATTAAAACTTTACTCA
ATAACCTATAATGAAGCCTATAAAGAGAAAGCAAAGAAAACCTTGGAGAATTGTTCATTA
TATTTAGAAAAGGCACCACTTGTTTTCCCACAAATGGTTTGTTCATTATATTTATACTTA
AATTCAATCAATACAATCATTCTATCAACTAATAGTAATGATAATCAACAAAAACAACAA
TTACTATCAATTCTTGATGAAATTCATTCAAATTATATACCAAATAAATTAATTCTATTA
AATGATCATTCAAATAATTCAATTACACAATTCTTTGAAAAGAGTACTTCAAATTTAAAT
TTATCACTTTCAACACCAGTTTATGATAAAACTACATTTTCATTATGTAATCCAAATGGT
TGCACAATTTCAACAAATCAATTACAACAAATTAAATCAAATTTAATAAATCAAATTTAT
CCAAAATATTAAAATTTTGTTAAATAAAAATTAAAT
Length of connected seq. 1466
Full length Seq ID -
Full length Seq. -
Length of full length seq. -