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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP791
Library VH
(Link to library)
Clone ID VHP791
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16508-1
Original site URL
Representative seq. ID VHP791P
(Link to Original site)
Representative DNA sequence 
>VHP791 (VHP791Q) /CSM/VH/VHP7-D/VHP791Q.Seq.d/
CAATTAGGATTCGATGCATTCATTATCGGTCGTATGGATTATCAAGATATCGAAGCTCGT
TTAGAGAATAAGCAAATGGAGTTCATGTGGAGATCGACCCAAAGTACACCAGAGAATCAA
GTTTTCACATCAGTACTACGTGCAATGTATTGTACTCCAGATGGTTTCAACTTTGAGCAA
GGTGATGACCCAATTCAAGATGACCCAAATTTATTCGATAATAACGTAGACTCAAGAGCT
GAACAGTTCACTCAAGTGGCACTTGAATATGCAACTCATTATCGTACCAATAATGTACTA
ATTCCATTTGGTTGTGATTTCGCTTACCTTAACGCTCAAATGTATTACAAAAACATTGAC
AAACTAATCGCACATATCAATTCAAATCCGGATAAATATGGTTTAAATTTGTTATATTCA
ACTCCATCAATTTATATAGATGCTGTAAATGATGCCAATCTAGTATGGGAAGTGAAAACT
GATGATCTCTTCCCATATGCTGATAATGAATTTAGTTATTGGACTGGTTATTTCGTTAGT
CGTCCAGCATTGAAAGGCTACGTTCGTCAAAATAATGCTCTATTACATGTAGTTGAACAA
ATGTTGGTAACTAGTAGTAATCTTATGCCAAGTAGTAGATCTGAACAATTGGTTGATGAC
ATXXXXXXXXXXATCACATCCATTACTCCCAATGTTTACANCCACTCAACAATNTTCAAA
ACGATTGGAATTCTCAATATCAAGGTGTTTACTCACCATTGACTTCAGCCTCACCTTNAC
CAAATGGTTTAAAGATTCNAACTNTACAATGGTTAGATAATCAAGATAATACCATACTTT
TACGTATTGNAAATATTTATCAAATTGATGGTCAAGATTCACAAGATCCACAGGGGTATC
ACTTTAGATCTTTCAACTATCTTTTCAACAGGTTACAATCACTTGTGCAANTGAAATGAA
TTTAACTGGTGTTCAAAAATTATCAAAATTTATCAAGATTAGGAATGGAAAACTGTTGAT
GGTAAAAACTATGAATCATANATCATCATCATCAACTAAAGAAGAANAAAACAAAANAAA
AANAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
QLGFDAFIIGRMDYQDIEARLENKQMEFMWRSTQSTPENQVFTSVLRAMYCTPDGFNFEQ
GDDPIQDDPNLFDNNVDSRAEQFTQVALEYATHYRTNNVLIPFGCDFAYLNAQMYYKNID
KLIAHINSNPDKYGLNLLYSTPSIYIDAVNDANLVWEVKTDDLFPYADNEFSYWTGYFVS
RPALKGYVRQNNALLHVVEQMLVTSSNLMPSSRSEQLVDD---

---HIHYSQCLXPLNNXQNDWNSQYQGVYSPLTSASPXPNGLKIXTXQWLDNQDNTILLR
IXNIYQIDGQDSQDPQGYHFRSFNYLFNRLQSLVQXK*i*lvfknyqnlsrlgmenc*w*
kl*iixhhhqlkkxktkxkxk
Translated Amino Acid sequence (All Frames) 
Frame A:
QLGFDAFIIGRMDYQDIEARLENKQMEFMWRSTQSTPENQVFTSVLRAMYCTPDGFNFEQ
GDDPIQDDPNLFDNNVDSRAEQFTQVALEYATHYRTNNVLIPFGCDFAYLNAQMYYKNID
KLIAHINSNPDKYGLNLLYSTPSIYIDAVNDANLVWEVKTDDLFPYADNEFSYWTGYFVS
RPALKGYVRQNNALLHVVEQMLVTSSNLMPSSRSEQLVDD---

---itsitpnvyxhstxfktigilnikvfthh*lqphlxqmv*rfxlyng*iikiipyfy
vlxifiklmvkihkihrgitldlstifstgynhlcx*nefnwcskiikiyqd*ewktvdg
knyesxiiiin*rrxkqxkxkk

Frame B:
n*dsmhslsvvwiikisklv*riskwsscgdrpkvhqrikfshqyyvqcivlqmvstlsk
vmtqfkmtqiysiit*tqelnsslkwhlnmqliivpimy*fhlvvisltltlkcitktlt
n*shisiqirinmv*icyiqlhqfi*ml*mmpi*ygk*klmisshmlimnlviglvislv
vqh*katfvkimlyym*lnkcw*lvvilcqvvdlnnwlmt---

---shpllpmftxtqqxskrlefsisrclltidfsltxtkwfkdsnxtmvr*sr*yhtft
yxkylsn*wsrftrstgvsl*ifqlsfqqvtitcaxemnltgvqklskfikirngkllmv
ktmnhxsssstkeexnkxkxk

Frame C:
irircihyrsyglsryrssfre*angvhveidpkytressfhisttcnvlysrwfql*ar
**pnsr*pkfir**rrlks*tvhssgt*icnslsyq*ctnsiwl*frlp*rsnvlqkh*q
tnrtyqfksg*iwfkfvifnsinlyrcck*cqssmgsen**slpic***i*lldwlfr*s
ssierlrssk*csitcs*tnvgn***syak**i*tig**h---

---HIHYSQCLXPLNNXQNDWNSQYQGVYSPLTSASPXPNGLKIXTXQWLDNQDNTILLR
IXNIYQIDGQDSQDPQGYHFRSFNYLFNRLQSLVQXK*i*lvfknyqnlsrlgmenc*w*
kl*iixhhhqlkkxktkxkxk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP791 (VHP791Q) /CSM/VH/VHP7-D/VHP791Q.Seq.d/                       2002   0.0
VHG861 (VHG861Q) /CSM/VH/VHG8-C/VHG861Q.Seq.d/                       1304   0.0
AHI619 (AHI619Q) /CSM/AH/AHI6-A/AHI619Q.Seq.d/                       1304   0.0
VHL713 (VHL713Q) /CSM/VH/VHL7-A/VHL713Q.Seq.d/                       1300   0.0
VHD601 (VHD601Q) /CSM/VH/VHD6-A/VHD601Q.Seq.d/                       1277   0.0
VHK605 (VHK605Q) /CSM/VH/VHK6-A/VHK605Q.Seq.d/                       1273   0.0
VHD256 (VHD256Q) /CSM/VH/VHD2-C/VHD256Q.Seq.d/                       1273   0.0
CHG632 (CHG632Q) /CSM/CH/CHG6-B/CHG632Q.Seq.d/                       1271   0.0
SHA382 (SHA382Q) /CSM/SH/SHA3-D/SHA382Q.Seq.d/                       1269   0.0
CHO824 (CHO824Q) /CSM/CH/CHO8-A/CHO824Q.Seq.d/                       1267   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(M82822) Dictyostelium discoideum alpha-mannosidase (manA) g...  1312   0.0    1
(BJ427560) Dictyostelium discoideum cDNA clone:ddv62f23, 5' ...  1312   0.0    1
(BJ422037) Dictyostelium discoideum cDNA clone:ddv44j16, 5' ...  1304   0.0    1
(BJ334856) Dictyostelium discoideum cDNA clone:dda48e06, 5' ...  1304   0.0    1
(BJ424944) Dictyostelium discoideum cDNA clone:ddv54j03, 5' ...  1300   0.0    1
(BJ420022) Dictyostelium discoideum cDNA clone:ddv38a02, 5' ...  1277   0.0    1
(BJ424331) Dictyostelium discoideum cDNA clone:ddv52i02, 5' ...  1273   0.0    1
(BJ419939) Dictyostelium discoideum cDNA clone:ddv37o14, 5' ...  1273   0.0    1
(BJ365456) Dictyostelium discoideum cDNA clone:ddc35o08, 5' ...  1271   0.0    1
(BJ391672) Dictyostelium discoideum cDNA clone:dds24d21, 5' ...  1269   0.0    1
dna update 2008.12.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M82822_1(M82822|pid:none) Dictyostelium discoideum alpha-mannosi...   456   e-127
(P34098) RecName: Full=Lysosomal alpha-mannosidase;          Sho...   456   e-127
BC091843_1(BC091843|pid:none) Danio rerio zgc:110815, mRNA (cDNA...   197   5e-49
BC121882_1(BC121882|pid:none) Xenopus tropicalis lysosomal alpha...   182   2e-44
AC148217_12(AC148217|pid:none) Medicago truncatula clone mth2-20...   178   3e-43
AE014134_1973(AE014134|pid:none) Drosophila melanogaster chromos...   177   6e-43
AY119107_1(AY119107|pid:none) Drosophila melanogaster RE08556 fu...   173   1e-41
AE014134_1633(AE014134|pid:none) Drosophila melanogaster chromos...   173   1e-41
AB026648_12(AB026648|pid:none) Arabidopsis thaliana genomic DNA,...   172   2e-41
AY099704_1(AY099704|pid:none) Arabidopsis thaliana alpha-mannosi...   169   1e-40
protein update 2009. 7.21
PSORT 

 psg: 0.51  gvh: 0.35  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHP791 is nuc
5' end seq. ID VHP791F
5' end seq. 
>VHP791F.Seq
CAATTAGGATTCGATGCATTCATTATCGGTCGTATGGATTATCAAGATATCGAAGCTCGT
TTAGAGAATAAGCAAATGGAGTTCATGTGGAGATCGACCCAAAGTACACCAGAGAATCAA
GTTTTCACATCAGTACTACGTGCAATGTATTGTACTCCAGATGGTTTCAACTTTGAGCAA
GGTGATGACCCAATTCAAGATGACCCAAATTTATTCGATAATAACGTAGACTCAAGAGCT
GAACAGTTCACTCAAGTGGCACTTGAATATGCAACTCATTATCGTACCAATAATGTACTA
ATTCCATTTGGTTGTGATTTCGCTTACCTTAACGCTCAAATGTATTACAAAAACATTGAC
AAACTAATCGCACATATCAATTCAAATCCGGATAAATATGGTTTAAATTTGTTATATTCA
ACTCCATCAATTTATATAGATGCTGTAAATGATGCCAATCTAGTATGGGAAGTGAAAACT
GATGATCTCTTCCCATATGCTGATAATGAATTTAGTTATTGGACTGGTTATTTCGTTAGT
CGTCCAGCATTGAAAGGCTACGTTCGTCAAAATAATGCTCTATTACATGTAGTTGAACAA
ATGTTGGTAACTAGTAGTAATCTTATGCCAAGTAGTAGATCTGAACAATTGGTTGATGAC
ATNNNNNNNNNN
Length of 5' end seq. 672
3' end seq. ID VHP791Z
3' end seq. 
>VHP791Z.Seq
NNNNNNNNNNATCACATCCATTACTCCCAATGTTTACANCCACTCAACAATNTTCAAAAC
GATTGGAATTCTCAATATCAAGGTGTTTACTCACCATTGACTTCAGCCTCACCTTNACCA
AATGGTTTAAAGATTCNAACTNTACAATGGTTAGATAATCAAGATAATACCATACTTTTA
CGTATTGNAAATATTTATCAAATTGATGGTCAAGATTCACAAGATCCACAGGGGTATCAC
TTTAGATCTTTCAACTATCTTTTCAACAGGTTACAATCACTTGTGCAANTGAAATGAATT
TAACTGGTGTTCAAAAATTATCAAAATTTATCAAGATTAGGAATGGAAAACTGTTGATGG
TAAAAACTATGAATCATANATCATCATCATCAACTAAAGAAGAANAAAACAAAANAAAAA
NAAAAAA
Length of 3' end seq. 427
Connected seq. ID VHP791P
Connected seq. 
>VHP791P.Seq
CAATTAGGATTCGATGCATTCATTATCGGTCGTATGGATTATCAAGATATCGAAGCTCGT
TTAGAGAATAAGCAAATGGAGTTCATGTGGAGATCGACCCAAAGTACACCAGAGAATCAA
GTTTTCACATCAGTACTACGTGCAATGTATTGTACTCCAGATGGTTTCAACTTTGAGCAA
GGTGATGACCCAATTCAAGATGACCCAAATTTATTCGATAATAACGTAGACTCAAGAGCT
GAACAGTTCACTCAAGTGGCACTTGAATATGCAACTCATTATCGTACCAATAATGTACTA
ATTCCATTTGGTTGTGATTTCGCTTACCTTAACGCTCAAATGTATTACAAAAACATTGAC
AAACTAATCGCACATATCAATTCAAATCCGGATAAATATGGTTTAAATTTGTTATATTCA
ACTCCATCAATTTATATAGATGCTGTAAATGATGCCAATCTAGTATGGGAAGTGAAAACT
GATGATCTCTTCCCATATGCTGATAATGAATTTAGTTATTGGACTGGTTATTTCGTTAGT
CGTCCAGCATTGAAAGGCTACGTTCGTCAAAATAATGCTCTATTACATGTAGTTGAACAA
ATGTTGGTAACTAGTAGTAATCTTATGCCAAGTAGTAGATCTGAACAATTGGTTGATGAC
AT----------ATCACATCCATTACTCCCAATGTTTACANCCACTCAACAATNTTCAAA
ACGATTGGAATTCTCAATATCAAGGTGTTTACTCACCATTGACTTCAGCCTCACCTTNAC
CAAATGGTTTAAAGATTCNAACTNTACAATGGTTAGATAATCAAGATAATACCATACTTT
TACGTATTGNAAATATTTATCAAATTGATGGTCAAGATTCACAAGATCCACAGGGGTATC
ACTTTAGATCTTTCAACTATCTTTTCAACAGGTTACAATCACTTGTGCAANTGAAATGAA
TTTAACTGGTGTTCAAAAATTATCAAAATTTATCAAGATTAGGAATGGAAAACTGTTGAT
GGTAAAAACTATGAATCATANATCATCATCATCAACTAAAGAAGAANAAAACAAAANAAA
AANAAAAAA
Length of connected seq. 1079
Full length Seq ID -
Full length Seq. -
Length of full length seq. -