AFO854
Library AF
(Link to library)
Clone ID AFO854
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFO854P
(Link to Original site)
Representative DNA sequence
>AFO854 (AFO854Q) /CSM/AF/AFO8-C/AFO854Q.Seq.d/
ATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAATA
CCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTAT
CAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTG
ATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTG
GTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGGTGCTCGTTTCTACGCTGTATCAG
CTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGA
ATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATC
AATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTG
CCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAAG
AAATCAACAAAGTTGAAACCGATCAATTAACTCATCAATACACTTTGGTCATTTCACCAG
ATAACACCTACAAAGTACTCGTCGATAACAAAXXXXXXXXXXAAAGAGATCCAAGCAGGT
AACCTCGCTGATGATTGGGAATTACTTCCATCAAAACAAATCAAAGATCCAAAACAATCC
AAACCAGTCGATTGGGTTGACGTAAAGGAAATCGATGACCCAGAAGATGTTAAACCAGCC
GGTCATGACGATATCCCAGCTTCAATCGTTGATCCAGAAGCTGTCAAACCAGAGGATTGG
AATGAAGAAGACGACGGTGAATGGGAAGCCCCAACCATCGCCAATCCAGAATACAAAGGT
GAATGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAAGGTGAATGGGNACACCCATTA
ATTGATAACCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTCGGTGCT
ATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATCGTCNCC
GACTCTGTCGAANAAGCTAAAGATTTCTNTGAAAAGACCTTTGTTGCCAACCAAGAAGCC
GAAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAAGAGAGAAAGAAAGCTGAC
GAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGAA
GAAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGATGNCAAAAAAGAAGAAGTCAAAAAA
TCAACCAAAAAAGT
sequence update 2001. 6. 1
Translated Amino Acid sequence
fsnhhiynyiffv**KRKNTNMRLLLCLIFLVFVFNFALSTVHFKDTFDNDWESRWVVSD
WHKEDGKSGKLVHTAGKWFGDENQKGIQTSEGARFYAVSAKFPSFSNKGKDLVLQYTVKN
EQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCGASKRVHVILNYKGKNHLIKKE
INKVETDQLTHQYTLVISPDNTYKVLVDNK---

---KEIQAGNLADDWELLPSKQIKDPKQSKPVDWVDVKEIDDPEDVKPAGHDDIPASIVD
PEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWXHPLIDNPEYAEDNE
LYLFNDLGAIGFELWQVKSGSIFNNMIVXDSVEXAKDFXEKTFVANQEAEKKMFDDLEAA
KAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTDXKKEEVKKSTKK


Translated Amino Acid sequence (All Frames)
Frame A:
ispiiifiiisflfnkkeript*dfycv*fs*flfsilhyqqfiskiplitignqdgllv
igikkmvnqvn*filqvnglvmkikkvfklvkvlvstlyqlnsqvsvtkvki*fsntl*r
mnkklivvvhtssyyhpn*inqhsmvnlniplclvqmfvvpqreftsfsttkerti*srk
kstklkpin*lintlwsfhqitptkyssit---

---KEIQAGNLADDWELLPSKQIKDPKQSKPVDWVDVKEIDDPEDVKPAGHDDIPASIVD
PEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWXHPLIDNPEYAEDNE
LYLFNDLGAIGFELWQVKSGSIFNNMIVXDSVEXAKDFXEKTFVANQEAEKKMFDDLEAA
KAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTDXKKEEVKKSTKK

Frame B:
flqssyl*lylfclikkkeyqhetfivfnflsfcfqfciinssfqryl**rlgikmgc**
la*rrw*ir*issycr*mvw**kskrysn**rcsflrcis*ipkfq*qr*rfsspihcke
*tks*lwwfihqvitiqirsisirw*i*ifhyvwsrclwclkessrhsqlqrkepfnqer
nqqs*nrsinssihfghftr*hlqstrr*q---

---krskqvtslmignyfhqnkskiqnnpnqsiglt*rksmtqkmlnqpvmtisqlqsli
qklsnqrigmkkttvngkpqpspiqntkvngkqrksqiqntkvngxth*litqntlktmn
stslmisvlsvsnygklnlvpslti*ssptlsxklkisxkrpllptkkpkrkclttskpp
klkrerkltkn*lpkkllkkkpkklmkkkkkslkki*lklmxkkkksknqpkk

Frame C:
fsnhhiynyiffv**KRKNTNMRLLLCLIFLVFVFNFALSTVHFKDTFDNDWESRWVVSD
WHKEDGKSGKLVHTAGKWFGDENQKGIQTSEGARFYAVSAKFPSFSNKGKDLVLQYTVKN
EQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCGASKRVHVILNYKGKNHLIKKE
INKVETDQLTHQYTLVISPDNTYKVLVDNK---

---rdpsr*pr**lgitsiktnqrsktiqtsrlg*rkgnr*prrc*tsrs*rypsfnr*s
rscqtrgle*rrrr*mgspnhrqsriqr*meskenpksriqr*mgtpin**prir*rq*t
lpl**srcyrfrimas*iwfhl*qydrxrlcrxs*rfl*kdlccqprsrkenv*rprsrq
s*rekes*rkiscrksc*krsrrs**rrrrsr*rrfs*n*xqkrrsqkinqks

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFO854 (AFO854Q) /CSM/AF/AFO8-C/AFO854Q.Seq.d/ 2040 0.0
AFN257 (AFN257Q) /CSM/AF/AFN2-C/AFN257Q.Seq.d/ 2016 0.0
VFL130 (VFL130Q) /CSM/VF/VFL1-B/VFL130Q.Seq.d/ 1051 0.0
VFI619 (VFI619Q) /CSM/VF/VFI6-A/VFI619Q.Seq.d/ 1051 0.0
VFE283 (VFE283Q) /CSM/VF/VFE2-D/VFE283Q.Seq.d/ 1051 0.0
VFE122 (VFE122Q) /CSM/VF/VFE1-A/VFE122Q.Seq.d/ 1051 0.0
SFH171 (SFH171Q) /CSM/SF/SFH1-C/SFH171Q.Seq.d/ 1051 0.0
SFG873 (SFG873Q) /CSM/SF/SFG8-D/SFG873Q.Seq.d/ 1051 0.0
CHC137 (CHC137Q) /CSM/CH/CHC1-B/CHC137Q.Seq.d/ 1051 0.0
AFO794 (AFO794Q) /CSM/AF/AFO7-D/AFO794Q.Seq.d/ 1051 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U36937|U36937.1 Dictyostelium discoideum calreticulin mRNA, complete cds. 1051 0.0 3
BD248385|BD248385.1 Gene participating in tolerance against environmental stress. 92 4e-28 4
BH160872|BH160872.1 ENTRI18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 74 6e-20 4
BI921109|BI921109.1 EST541012 tomato callus Lycopersicon esculentum cDNA clone cLEC72A21 5' end, mRNA sequence. 74 3e-10 2
BE435540|BE435540.1 EST406618 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG27F24, mRNA sequence. 74 5e-09 1
AW932476|AW932476.1 EST358319 tomato fruit mature green, TAMU Lycopersicon esculentum cDNA clone cLEF48O8 5', mRNA sequence. 74 5e-09 1
AW033447|AW033447.1 EST277018 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC28B21 similar to calreticulin, putative, mRNA sequence. 74 5e-09 1
AI489195|AI489195.1 EST247534 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED17D1, mRNA sequence. 74 5e-09 1
AW649196|AW649196.1 EST327650 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI7M10 5', mRNA sequence. 74 5e-09 1
AW626316|AW626316.1 EST320223 tomato radicle, 5 d post-imbibition, Cornell University Lycopersicon esculentum cDNA clone cLEZ19K24 5', mRNA sequence. 74 5e-09 1
dna update 2003. 9.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U36937_1(U36937|pid:none) Dictyostelium discoideum calreticulin ... 356 0.0
(Q40401) RecName: Full=Calreticulin; Flags: Precursor; &T16968(... 223 e-108
EF085019_1(EF085019|pid:none) Picea sitchensis clone WS0297_I16 ... 222 e-108
AB196794_1(AB196794|pid:none) Glycine max Gm crt-1 mRNA for calr... 221 e-108
EU984501_1(EU984501|pid:none) Nicotiana tabacum calreticulin mRN... 220 e-107
AC133339_28(AC133339|pid:none) Oryza sativa chromosome 3 BAC OSJ... 223 e-107
(Q9XF98) RecName: Full=Calreticulin; Flags: Precursor; &AF13473... 216 e-107
AM445600_2(AM445600|pid:none) Vitis vinifera contig VV78X277184.... 214 e-106
AY836753_1(AY836753|pid:none) Triticum aestivum calreticulin-lik... 221 e-106
L27348_1(L27348|pid:none) Hordeum vulgare calreticulin (CRH1) mR... 219 e-105
protein update 2009. 4.26
PSORT

psg: 1.01 gvh: 0.69 alm: 0.47 top: 0.10 tms: 0.00 mit: 0.40 mip: 0.03
nuc: 0.06 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: extracellular, including cell wall
16.0 %: nuclear
12.0 %: mitochondrial
8.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: vacuolar
8.0 %: endoplasmic reticulum

>> prediction for AFO854 is exc

5' end seq. ID AFO854F
5' end seq.
>AFO854F.Seq
ATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAATA
CCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTAT
CAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTG
ATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTG
GTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGGTGCTCGTTTCTACGCTGTATCAG
CTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGA
ATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATC
AATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTG
CCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAAG
AAATCAACAAAGTTGAAACCGATCAATTAACTCATCAATACACTTTGGTCATTTCACCAG
ATAACACCTACAAAGTACTCGTCGATAACAAA----------
Length of 5' end seq. 632
3' end seq. ID AFO854Z
3' end seq.
>AFO854Z.Seq
----------AAAGAGATCCAAGCAGGTAACCTCGCTGATGATTGGGAATTACTTCCATC
AAAACAAATCAAAGATCCAAAACAATCCAAACCAGTCGATTGGGTTGACGTAAAGGAAAT
CGATGACCCAGAAGATGTTAAACCAGCCGGTCATGACGATATCCCAGCTTCAATCGTTGA
TCCAGAAGCTGTCAAACCAGAGGATTGGAATGAAGAAGACGACGGTGAATGGGAAGCCCC
AACCATCGCCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCCAAATCCAGA
ATACAAAGGTGAATGGGNACACCCATTAATTGATAACCCAGAATACGCTGAAGACAATGA
ACTCTACCTCTTTAATGATCTCGGTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGG
TTCCATCTTTAACAATATGATCGTCNCCGACTCTGTCGAANAAGCTAAAGATTTCTNTGA
AAAGACCTTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGACGACCTCGAAGCCGC
CAAAGCTGAAGAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAA
AGAAGCCGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAAC
TGATGNCAAAAAAGAAGAAGTCAAAAAATCAACCAAAAAAGT
Length of 3' end seq. 692
Connected seq. ID AFO854P
Connected seq.
>AFO854P.Seq
ATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAATA
CCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTAT
CAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTG
ATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTG
GTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGGTGCTCGTTTCTACGCTGTATCAG
CTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGA
ATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATC
AATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTG
CCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAAG
AAATCAACAAAGTTGAAACCGATCAATTAACTCATCAATACACTTTGGTCATTTCACCAG
ATAACACCTACAAAGTACTCGTCGATAACAAA----------AAAGAGATCCAAGCAGGT
AACCTCGCTGATGATTGGGAATTACTTCCATCAAAACAAATCAAAGATCCAAAACAATCC
AAACCAGTCGATTGGGTTGACGTAAAGGAAATCGATGACCCAGAAGATGTTAAACCAGCC
GGTCATGACGATATCCCAGCTTCAATCGTTGATCCAGAAGCTGTCAAACCAGAGGATTGG
AATGAAGAAGACGACGGTGAATGGGAAGCCCCAACCATCGCCAATCCAGAATACAAAGGT
GAATGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAAGGTGAATGGGNACACCCATTA
ATTGATAACCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTCGGTGCT
ATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATCGTCNCC
GACTCTGTCGAANAAGCTAAAGATTTCTNTGAAAAGACCTTTGTTGCCAACCAAGAAGCC
GAAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAAGAGAGAAAGAAAGCTGAC
GAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGAA
GAAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGATGNCAAAAAAGAAGAAGTCAAAAAA
TCAACCAAAAAAGT
Length of connected seq. 1324
Full length Seq ID -
Full length Seq. -
Length of full length seq. -