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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP725
Library VH
(Link to library)
Clone ID VHP725
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11844-1
Original site URL
Representative seq. ID VHP725P
(Link to Original site)
Representative DNA sequence 
>VHP725 (VHP725Q) /CSM/VH/VHP7-B/VHP725Q.Seq.d/
AAATTTAAAAAAATAATAATTTTATTTCACTCCCTCATAAATAAAAAGAAGGTGGTAGTG
ATGTTCGTTGATAATTTTTAAATTTAATAATAATTAATTTTAAAAAATAGAAAGAAAGAA
AGAATAATAATGGATAATCAAAATTATTCTAATAAAAGTGAAAGTGATAGTGGTAGAAGT
CAAGGTACCGAAAATCTTGTTGAAATTAGAGAGGAACAAGTGGTTCAATCAATTCAAAGA
ATTACAAGTTTATATCCAAGTATGGGTGAAAAAAATCGTAGTGGTATTTGGAATACTTTC
TATTTATCAATTACAGCTATTGGTTGTATTTTTGGTGACATAGGTACATCTCCATTGTAT
GTTTATGCATCAATGTTTAAAGGACCACCAGGAGAGAAAGAGGTGATTGGTAGTCTTTCA
TTAATTCTATGGGCATTGATTATGGTGGTAACAGTGAAATATGTTGTTTTCATTCTAAAT
GCTGATAACAATGGCGAGGGTGGTATCATTGCATTGGTTTCATTAATTCCAAAACAAACC
AATCAAAAATTGAAATCAGCTCTAACAATATTGGCTCTATGTGGTTCTTCTTTCATTTTG
GGTGATGGCGTTATCACACCTGCCGTATCATTGCTTAXXXXXXXXXXTTAAAGATGAGCA
TCGTGTNGTTGCCAAAGNATTAATACCAGAAAGAGGTGTATTCCNAATTAGTATTAACNA
TGGTTATGGCTGAAATCATTAATGTACCTTGGGTAATTAAAAAATTATTCATTGAAAGAC
TCATTCAATTAAATCCAAAATCAATTAATAAAATTAAAGCCACCACCACTCAAGATCAAG
AAAAATTGGTAATTCCAACAACTAAAAAAGAAATTGTTGGATATCATTACTCTGAACAAA
ATGATACCGAAGGAAATGATGTTGAACTTGAAGTTGAAGGTGTTCCACATATCACTTATT
TCTTATCTAGATTACGTGTTAAATCTTCAAAAAAACAATTCATCTTAAAACGTTTATCGA
TTTTTATCTATGATATTCTTCTTCAAAACAGTAGATCAGAAGCTCATTATTATGGTATTC
ATCATAGTTCAATGAGGAAATTGGTAGTAAAATTCAAATTTAAAAATCTAAATAAAATAA
TTT
sequence update 2002.10.25
Translated Amino Acid sequence 
kfkkiiilfhslinkkkvvvmfvdnf*i***LILKNRKKERIIMDNQNYSNKSESDSGRS
QGTENLVEIREEQVVQSIQRITSLYPSMGEKNRSGIWNTFYLSITAIGCIFGDIGTSPLY
VYASMFKGPPGEKEVIGSLSLILWALIMVVTVKYVVFILNADNNGEGGIIALVSLIPKQT
NQKLKSALTILALCGSSFILGDGVITPAVSLL---

---KDEHRVVAKXLIPERGVFXISINXGYG*nh*ctlgn*kiih*kthsikskin**n*s
hhhsrsrkignsnn*krncwisll*tk*yrrk*c*t*s*rcstyhlfli*itc*ifkkti
hlktfidfyl*yssskq*irssllwyss*fneeigskiqi*ksk*nn
Translated Amino Acid sequence (All Frames) 
Frame A:
kfkkiiilfhslinkkkvvvmfvdnf*i***LILKNRKKERIIMDNQNYSNKSESDSGRS
QGTENLVEIREEQVVQSIQRITSLYPSMGEKNRSGIWNTFYLSITAIGCIFGDIGTSPLY
VYASMFKGPPGEKEVIGSLSLILWALIMVVTVKYVVFILNADNNGEGGIIALVSLIPKQT
NQKLKSALTILALCGSSFILGDGVITPAVSLL---

---lkmsivxlpkx*yqkevysxlvltmvmaeiinvpwvikklfierliqlnpksinkik
atttqdqeklvipttkkeivgyhyseqndtegndvelevegvphityflsrlrvksskkq
filkrlsifiydillqnsrseahyygihhssmrklvvkfkfknlnkii

Frame B:
nlkk**fyftps*ikrrw**csliifkfnnn*f*kierkke**wiikiilikvkvivvev
kvpkillklernkwfnqfkelqvyiqvwvkkivvvfgilsiyqlqllvvflvt*vhlhcm
fmhqclkdhqerkr*lvvfh*fygh*lww*q*nmlfsf*mlitmarvvslhwfh*fqnkp
ikn*nql*qywlyvvllsfwvmalshlpyhcl---

---*r*ascxcqxintrkrcipn*y*xwlwlkslmylg*lknyslkdsfn*iqnqliklk
ppplkikknw*fqqlkkklldiitlnkmipkemmlnlklkvfhislisyldyvlnlqknn
ss*nvyrflsmifffktvdqkliimvfiivq*gnw**nsnlki*ik*f

Frame C:
i*knnnfislphk*keggsdvr**flnliiinfkk*kerknnng*sklf**k*k**w*ks
ryrksc*n*rgtsgsinsknykfiskyg*kks*wyleyflfinysywlyfw*hryisivc
lcinv*rttrrergdw*sfinsmgidyggnseiccfhskc**qwrgwyhcigfinsktnq
skieissnnigsmwfffhfg*wryhtcriia---

---KDEHRVVAKXLIPERGVFXISINXGYG*nh*ctlgn*kiih*kthsikskin**n*s
hhhsrsrkignsnn*krncwisll*tk*yrrk*c*t*s*rcstyhlfli*itc*ifkkti
hlktfidfyl*yssskq*irssllwyss*fneeigskiqi*ksk*nn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP725 (VHP725Q) /CSM/VH/VHP7-B/VHP725Q.Seq.d/                       1096   0.0
VHM209 (VHM209Q) /CSM/VH/VHM2-A/VHM209Q.Seq.d/                        948   0.0
VHF103 (VHF103Q) /CSM/VH/VHF1-A/VHF103Q.Seq.d/                        948   0.0
VHA102 (VHA102Q) /CSM/VH/VHA1-A/VHA102Q.Seq.d/                        938   0.0
CHM360 (CHM360Q) /CSM/CH/CHM3-C/CHM360Q.Seq.d/                        936   0.0
VHQ195 (VHQ195Q) /CSM/VH/VHQ1-D/VHQ195Q.Seq.d/                        934   0.0
VHA603 (VHA603Q) /CSM/VH/VHA6-A/VHA603Q.Seq.d/                        934   0.0
VHK529 (VHK529Q) /CSM/VH/VHK5-B/VHK529Q.Seq.d/                        668   0.0
VHG471 (VHG471Q) /CSM/VH/VHG4-C/VHG471Q.Seq.d/                        577   e-163
VHK552 (VHK552Q) /CSM/VH/VHK5-C/VHK552Q.Seq.d/                        561   e-159
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ425213) Dictyostelium discoideum cDNA clone:ddv55a04, 5' ...   718   0.0    3
(BJ421203) Dictyostelium discoideum cDNA clone:ddv41e01, 5' ...   718   0.0    3
(BJ427379) Dictyostelium discoideum cDNA clone:ddv62b07, 5' ...   718   0.0    3
(BJ418220) Dictyostelium discoideum cDNA clone:ddv32e02, 5' ...   718   0.0    3
(BJ368410) Dictyostelium discoideum cDNA clone:ddc46h15, 5' ...   706   0.0    3
(BJ427883) Dictyostelium discoideum cDNA clone:ddv63m23, 5' ...   718   0.0    3
(BJ417907) Dictyostelium discoideum cDNA clone:ddv31c01, 5' ...   716   0.0    3
(BJ424410) Dictyostelium discoideum cDNA clone:ddv52i07, 5' ...   438   0.0    3
(BJ446281) Dictyostelium discoideum cDNA clone:ddv62b07, 3' ...   337   0.0    3
(BJ436721) Dictyostelium discoideum cDNA clone:ddv32e02, 3' ...   337   0.0    4
dna update 2008.12.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP010904_1583(AP010904|pid:none) Desulfovibrio magneticus RS-1 D...   119   3e-25
FP312977_15(FP312977|pid:none) uncultured bacterial clone mtbe21...   115   2e-24
CP001110_2564(CP001110|pid:none) Pelodictyon phaeoclathratiforme...   112   3e-23
(Q2IPI8) RecName: Full=Probable potassium transport system prote...   112   3e-23
CP001131_1002(CP001131|pid:none) Anaeromyxobacter sp. K, complet...   111   4e-23
CP001359_997(CP001359|pid:none) Anaeromyxobacter dehalogenans 2C...   111   4e-23
(A1BHB7) RecName: Full=Probable potassium transport system prote...   111   4e-23
(Q74AK4) RecName: Full=Probable potassium transport system prote...   111   5e-23
(Q5ZTN5) RecName: Full=Probable potassium transport system prote...   110   7e-23
(B0KTK9) RecName: Full=Probable potassium transport system prote...   110   9e-23
protein update 2009. 7.21
PSORT 

 psg: 0.61  gvh: 0.40  alm: 0.22  top: 0.47  tms: 0.07  mit: 0.23  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: nuclear
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VHP725 is end
5' end seq. ID VHP725F
5' end seq. 
>VHP725F.Seq
AAATTTAAAAAAATAATAATTTTATTTCACTCCCTCATAAATAAAAAGAAGGTGGTAGTG
ATGTTCGTTGATAATTTTTAAATTTAATAATAATTAATTTTAAAAAATAGAAAGAAAGAA
AGAATAATAATGGATAATCAAAATTATTCTAATAAAAGTGAAAGTGATAGTGGTAGAAGT
CAAGGTACCGAAAATCTTGTTGAAATTAGAGAGGAACAAGTGGTTCAATCAATTCAAAGA
ATTACAAGTTTATATCCAAGTATGGGTGAAAAAAATCGTAGTGGTATTTGGAATACTTTC
TATTTATCAATTACAGCTATTGGTTGTATTTTTGGTGACATAGGTACATCTCCATTGTAT
GTTTATGCATCAATGTTTAAAGGACCACCAGGAGAGAAAGAGGTGATTGGTAGTCTTTCA
TTAATTCTATGGGCATTGATTATGGTGGTAACAGTGAAATATGTTGTTTTCATTCTAAAT
GCTGATAACAATGGCGAGGGTGGTATCATTGCATTGGTTTCATTAATTCCAAAACAAACC
AATCAAAAATTGAAATCAGCTCTAACAATATTGGCTCTATGTGGTTCTTCTTTCATTTTG
GGTGATGGCGTTATCACACCTGCCGTATCATTGCTTANNNNNNNNNN
Length of 5' end seq. 647
3' end seq. ID VHP725Z
3' end seq. 
>VHP725Z.Seq
NNNNNNNNNNTTAAAGATGAGCATCGTGTNGTTGCCAAAGNATTAATACCAGAAAGAGGT
GTATTCCNAATTAGTATTAACNATGGTTATGGCTGAAATCATTAATGTACCTTGGGTAAT
TAAAAAATTATTCATTGAAAGACTCATTCAATTAAATCCAAAATCAATTAATAAAATTAA
AGCCACCACCACTCAAGATCAAGAAAAATTGGTAATTCCAACAACTAAAAAAGAAATTGT
TGGATATCATTACTCTGAACAAAATGATACCGAAGGAAATGATGTTGAACTTGAAGTTGA
AGGTGTTCCACATATCACTTATTTCTTATCTAGATTACGTGTTAAATCTTCAAAAAAACA
ATTCATCTTAAAACGTTTATCGATTTTTATCTATGATATTCTTCTTCAAAACAGTAGATC
AGAAGCTCATTATTATGGTATTCATCATAGTTCAATGAGGAAATTGGTAGTAAAATTCAA
ATTTAAAAATCTAAATAAAATAATTT
Length of 3' end seq. 506
Connected seq. ID VHP725P
Connected seq. 
>VHP725P.Seq
AAATTTAAAAAAATAATAATTTTATTTCACTCCCTCATAAATAAAAAGAAGGTGGTAGTG
ATGTTCGTTGATAATTTTTAAATTTAATAATAATTAATTTTAAAAAATAGAAAGAAAGAA
AGAATAATAATGGATAATCAAAATTATTCTAATAAAAGTGAAAGTGATAGTGGTAGAAGT
CAAGGTACCGAAAATCTTGTTGAAATTAGAGAGGAACAAGTGGTTCAATCAATTCAAAGA
ATTACAAGTTTATATCCAAGTATGGGTGAAAAAAATCGTAGTGGTATTTGGAATACTTTC
TATTTATCAATTACAGCTATTGGTTGTATTTTTGGTGACATAGGTACATCTCCATTGTAT
GTTTATGCATCAATGTTTAAAGGACCACCAGGAGAGAAAGAGGTGATTGGTAGTCTTTCA
TTAATTCTATGGGCATTGATTATGGTGGTAACAGTGAAATATGTTGTTTTCATTCTAAAT
GCTGATAACAATGGCGAGGGTGGTATCATTGCATTGGTTTCATTAATTCCAAAACAAACC
AATCAAAAATTGAAATCAGCTCTAACAATATTGGCTCTATGTGGTTCTTCTTTCATTTTG
GGTGATGGCGTTATCACACCTGCCGTATCATTGCTTA----------TTAAAGATGAGCA
TCGTGTNGTTGCCAAAGNATTAATACCAGAAAGAGGTGTATTCCNAATTAGTATTAACNA
TGGTTATGGCTGAAATCATTAATGTACCTTGGGTAATTAAAAAATTATTCATTGAAAGAC
TCATTCAATTAAATCCAAAATCAATTAATAAAATTAAAGCCACCACCACTCAAGATCAAG
AAAAATTGGTAATTCCAACAACTAAAAAAGAAATTGTTGGATATCATTACTCTGAACAAA
ATGATACCGAAGGAAATGATGTTGAACTTGAAGTTGAAGGTGTTCCACATATCACTTATT
TCTTATCTAGATTACGTGTTAAATCTTCAAAAAAACAATTCATCTTAAAACGTTTATCGA
TTTTTATCTATGATATTCTTCTTCAAAACAGTAGATCAGAAGCTCATTATTATGGTATTC
ATCATAGTTCAATGAGGAAATTGGTAGTAAAATTCAAATTTAAAAATCTAAATAAAATAA
TTT
Length of connected seq. 1133
Full length Seq ID -
Full length Seq. -
Length of full length seq. -