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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP717
Library VH
(Link to library)
Clone ID VHP717
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11264-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHP717 (VHP717Q) /CSM/VH/VHP7-A/VHP717Q.Seq.d/
XXXXXXXXXXTATCCAAAAGATATATGTTCAAAAGCATTAGCTGAATCATTTAATACTCC
ATTCCCATTTGAGGATGAAAATGCAAGAATCAATCATAATTTAGTAGATTTATCAAGCAT
ATCACCAACTCTTAAATTTGATATTAAATATGCAACCACTGATAACTTTACAGGTATTCA
ACTTTATAAACAAGCAAAAGCATTTTTAAATAAAGATGCTGCTAAATGTTTATTATCAGC
TCATAATTGGTTAGTAGAGAATTGGAATGTTGGTATTATAGTTTTCGATTCCTATAGACC
ATGGAATATCACATGGACAATGGCAGAATCGGTTATACCAGAATTTAGAGGTCTATATGT
TGCACCACCAACCAAAGGTTCAGTTCATAATCGTGGTGGTGCACTTGATATCTCATTATA
TGATTTATCAAATGGTAAAGTAATTGAAATGGTTGGTGATTTCGATGAATTTAGTATTCG
TTCTCATCGTTCTTATTTTGGTGGTTCAGAACTTCAACGTTGGTATAGAAAACTTTTAAC
AATTGCATTAATCAATAATAATTTCAGACCAAATGAACACGAATGGTGGCATTTTGATAT
AATTGTTGATAAACCATTAGCAGTTTTAAATTTACAATTTGATCAAATTAATTAAAATAT
AAAATAAAATAAAATAAATAATTATTTTTTTTATATACAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---PKDICSKALAESFNTPFPFEDENARINHNLVDLSSISPTLKFDIKYATTDNFTGIQL
YKQAKAFLNKDAAKCLLSAHNWLVENWNVGIIVFDSYRPWNITWTMAESVIPEFRGLYVA
PPTKGSVHNRGGALDISLYDLSNGKVIEMVGDFDEFSIRSHRSYFGGSELQRWYRKLLTI
ALINNNFRPNEHEWWHFDIIVDKPLAVLNLQFDQIN*nik*nkinnyffyiq
Translated Amino Acid sequence (All Frames) 
Frame A:
---iqkiyvqkh*lnhlilhshlrmkmqesiii**iyqayhqllnlilnmqplitlqvfn
finkqkhf*ikmllnvyyqliig**rigmlvl*fsipidhgishgqwqnrlyqnlevyml
hhqpkvqfiivvvhlishymiyqmvk*lkwlvismnlvfvlivlilvvqnfnvgienf*q
lh*siiisdqmntnggili*llinh*qf*iynlikliki*nkik*iiiffiy


Frame B:
---skrymfksis*ii*ysipi*g*kcknqs*fsrfikhitns*i*y*icnh**lyryst
l*tsksifk*rcc*mfiiss*lvsrelecwyysfrfl*tmeyhmdngrigytri*rsicc
ttnqrfss*swwct*ylii*fikw*sn*ngw*fr*i*ysfssflfwwfrtstlv*ktfnn
cinq**fqtk*trmvaf*ync**tissfkfti*sn*lkykik*nk*lfflyt


Frame C:
---PKDICSKALAESFNTPFPFEDENARINHNLVDLSSISPTLKFDIKYATTDNFTGIQL
YKQAKAFLNKDAAKCLLSAHNWLVENWNVGIIVFDSYRPWNITWTMAESVIPEFRGLYVA
PPTKGSVHNRGGALDISLYDLSNGKVIEMVGDFDEFSIRSHRSYFGGSELQRWYRKLLTI
ALINNNFRPNEHEWWHFDIIVDKPLAVLNLQFDQIN*nik*nkinnyffyiq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ465 (VHQ465Q) /CSM/VH/VHQ4-C/VHQ465Q.Seq.d/                       1257   0.0
VHP717 (VHP717Q) /CSM/VH/VHP7-A/VHP717Q.Seq.d/                       1257   0.0
VHP605 (VHP605Q) /CSM/VH/VHP6-A/VHP605Q.Seq.d/                       1247   0.0
AHD309 (AHD309Q) /CSM/AH/AHD3-A/AHD309Q.Seq.d/                       1247   0.0
CHF614 (CHF614Q) /CSM/CH/CHF6-A/CHF614Q.Seq.d/                       1156   0.0
AHO103 (AHO103Q) /CSM/AH/AHO1-A/AHO103Q.Seq.d/                       1132   0.0
CHL552 (CHL552Q) /CSM/CH/CHL5-C/CHL552Q.Seq.d/                       1106   0.0
AHO651 (AHO651Q) /CSM/AH/AHO6-C/AHO651Q.Seq.d/                       1106   0.0
SHE619 (SHE619Q) /CSM/SH/SHE6-A/SHE619Q.Seq.d/                       1100   0.0
SHH233 (SHH233Q) /CSM/SH/SHH2-B/SHH233Q.Seq.d/                       1094   0.0
own update 2003. 1. 8
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017164|AE017164.1 Prochlorococcus marinus subsp. marinus str. CCMP1375 section 4 of 6 of the complete genome.    34   6e-04  8
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    36   0.005  11
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   0.007  15
AP003364|AP003364.2 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 7/9.    36   0.016  12
AP001118|AP001118.1 Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence, segment 1/2.    36   0.017  9
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    40   0.017  10
AC106340|AC106340.5 Rattus norvegicus clone CH230-152H13, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces.    50   0.039  1
BZ208746|BZ208746.1 CH230-487D22.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-487D22, DNA sequence.    50   0.039  1
AC009922|AC009922.3 Homo sapiens clone RP11-115O24, WORKING DRAFT SEQUENCE, 25 unordered pieces.    34   0.10   8
CC534078|CC534078.1 CH240_412C18.T7 CHORI-240 Bos taurus genomic clone CH240_412C18, genomic survey sequence.    32   0.14   3
dna update 2003.10.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000473_7444(CP000473|pid:none) Solibacter usitatus Ellin6076, ...   151   2e-35
CP000360_2741(CP000360|pid:none) Acidobacteria bacterium Ellin34...   149   8e-35
CP001340_2354(CP001340|pid:none) Caulobacter crescentus NA1000, ...   148   1e-34
AE005673_2256(AE005673|pid:none) Caulobacter crescentus CB15, co...   148   1e-34
CP000927_1402(CP000927|pid:none) Caulobacter sp. K31, complete g...   143   6e-33
CP001097_1231(CP001097|pid:none) Chlorobium limicola DSM 245, co...   115   2e-24
CP000113_6254(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   108   2e-22
AP010904_500(AP010904|pid:none) Desulfovibrio magneticus RS-1 DN...   108   2e-22
CP000685_4562(CP000685|pid:none) Flavobacterium johnsoniae UW101...   103   5e-21
CU928163_1716(CU928163|pid:none) Escherichia coli UMN026 chromos...    96   8e-19
protein update 2009. 7.21
PSORT 

 psg: 0.83  gvh: 0.36  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VHP717 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHP717Z
3' end seq. 
>VHP717Z.Seq
NNNNNNNNNNTATCCAAAAGATATATGTTCAAAAGCATTAGCTGAATCATTTAATACTCC
ATTCCCATTTGAGGATGAAAATGCAAGAATCAATCATAATTTAGTAGATTTATCAAGCAT
ATCACCAACTCTTAAATTTGATATTAAATATGCAACCACTGATAACTTTACAGGTATTCA
ACTTTATAAACAAGCAAAAGCATTTTTAAATAAAGATGCTGCTAAATGTTTATTATCAGC
TCATAATTGGTTAGTAGAGAATTGGAATGTTGGTATTATAGTTTTCGATTCCTATAGACC
ATGGAATATCACATGGACAATGGCAGAATCGGTTATACCAGAATTTAGAGGTCTATATGT
TGCACCACCAACCAAAGGTTCAGTTCATAATCGTGGTGGTGCACTTGATATCTCATTATA
TGATTTATCAAATGGTAAAGTAATTGAAATGGTTGGTGATTTCGATGAATTTAGTATTCG
TTCTCATCGTTCTTATTTTGGTGGTTCAGAACTTCAACGTTGGTATAGAAAACTTTTAAC
AATTGCATTAATCAATAATAATTTCAGACCAAATGAACACGAATGGTGGCATTTTGATAT
AATTGTTGATAAACCATTAGCAGTTTTAAATTTACAATTTGATCAAATTAATTAAAATAT
AAAATAAAATAAAATAAATAATTATTTTTTTTATATACAA
Length of 3' end seq. 700
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -