VHP702 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHP702
Library	VH (Link to library)
Clone ID	VHP702 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16260-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHP7-A/VHP702Q.Seq.d/
Representative seq. ID	VHP702P (Link to Original site)
Representative DNA sequence	>VHP702 (VHP702Q) /CSM/VH/VHP7-A/VHP702Q.Seq.d/ AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTCATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAXXXXXXXXXXATCTCGCTGATAACCACGAATGGGATAAAAATGATGCCATGAACA TTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTG TTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAG AAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCC TCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTAC TCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAA TTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTA TTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTAC CAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTT TCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAG CCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATC TTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAANATAG TAATCAAATCTAAAAAAAA
sequence update	2002.10.25
Translated Amino Acid sequence	LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFRRAIESVNVIVGNTE--- ---LADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGV VCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITA PENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQ CVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLtivalxfsxivik skk
Translated Amino Acid sequence (All Frames)	Frame A: nsrvqkkstkwlisqsikfvplwtvvkiseiclsllmsitvkplyqilskelvllpik flvidichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnfsilsipqvtlis vqkllpsvllmvlslsiaskvfaykpklyyvkpslnvsnqsysstksivsynsntl kklislsvellnpsmsllvtl--- ---islittngikmmptfglsvqkvtvpisssmspkvfnimklkilslvlsngppkkv lfvmktevsvsifmmspstlmpstevvvkssqllvvysmllnlppqlsnqstkll pqktllvvftlysivvevlllvknvvsvphyslskliyqynpsvspliyvptlpvklsh nvssiiglqlvlstkirkplkslpperekvpqksqiltnstknskqfkshxsfqx*s nlkk Frame B: tleckkskvqngfhnrsnschygpskyqkyvchcscrsrnhfirffnpkswyycrs fwyeiyvmsc*trawyhhificitslrnakgrqitswlyftrifnqsyrfprsrfq frsnccppcywcfsryrlrrrclrtnrncitssrrtyqtslirqqsrsflirtpikh rslslfpsyirqchcwh--- ---sr*prmgkchehlvfrsrrrcqsprqchqrcsifenrffrwcfpmghqrrc cl*kherypfqslchpphchpqrwwsnhpncssctlccinclpnslrtnllsrnyc prkrywwyllctqssrycywrtsyrfpiilcqssftsirilrfhrftfphcrssfpt mclrslgfnwccqqreshsrfshqkekrfsprnprsqiprktlnnlsrtxvfkxsnq ikk Frame C: LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFRRAIESVNVIVGNTE--- ---LADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGV VCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITA PENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQ CVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLti*valxfsxivik skk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHP702 (VHP702Q) /CSM/VH/VHP7-A/VHP702Q.Seq.d/ 2527 0.0 VHQ491 (VHQ491Q) /CSM/VH/VHQ4-D/VHQ491Q.Seq.d/ 1407 0.0 VHQ476 (VHQ476Q) /CSM/VH/VHQ4-D/VHQ476Q.Seq.d/ 1407 0.0 VHQ453 (VHQ453Q) /CSM/VH/VHQ4-C/VHQ453Q.Seq.d/ 1407 0.0 VHQ434 (VHQ434Q) /CSM/VH/VHQ4-B/VHQ434Q.Seq.d/ 1407 0.0 VHQ410 (VHQ410Q) /CSM/VH/VHQ4-A/VHQ410Q.Seq.d/ 1407 0.0 VHQ359 (VHQ359Q) /CSM/VH/VHQ3-C/VHQ359Q.Seq.d/ 1407 0.0 VHQ212 (VHQ212Q) /CSM/VH/VHQ2-A/VHQ212Q.Seq.d/ 1407 0.0 VHQ208 (VHQ208Q) /CSM/VH/VHQ2-A/VHQ208Q.Seq.d/ 1407 0.0 VHQ186 (VHQ186Q) /CSM/VH/VHQ1-D/VHQ186Q.Seq.d/ 1407 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446805) Dictyostelium discoideum cDNA clone:ddv63k21, 3' ... 1407 0.0 1 (BJ446787) Dictyostelium discoideum cDNA clone:ddv63h20, 3' ... 1407 0.0 1 (BJ446779) Dictyostelium discoideum cDNA clone:ddv63f24, 3' ... 1407 0.0 1 (BJ446716) Dictyostelium discoideum cDNA clone:ddv63j14, 3' ... 1407 0.0 1 (BJ446698) Dictyostelium discoideum cDNA clone:ddv63f15, 3' ... 1407 0.0 1 (BJ446612) Dictyostelium discoideum cDNA clone:ddv63d10, 3' ... 1407 0.0 1 (BJ446590) Dictyostelium discoideum cDNA clone:ddv63o02, 3' ... 1407 0.0 1 (BJ446553) Dictyostelium discoideum cDNA clone:ddv63g04, 3' ... 1407 0.0 1 (BJ446539) Dictyostelium discoideum cDNA clone:ddv63d04, 3' ... 1407 0.0 1 (BJ446420) Dictyostelium discoideum cDNA clone:ddv62l18, 3' ... 1407 0.0 1
dna update	2008.12.21
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AB171046_1(AB171046\|pid:none) Macaca fascicularis brain cDNA clo... 435 e-120 AY391422_1(AY391422\|pid:none) Danio rerio eukaryotic translation... 291 3e-77 BT071866_1(BT071866\|pid:none) Salmo salar clone ssal-rgf-501-088... 289 2e-76 AY069933_1(AY069933\|pid:none) Rana sylvatica eukaryotic translat... 289 2e-76 BT059038_1(BT059038\|pid:none) Salmo salar clone ssal-rgf-521-328... 289 2e-76 BT045031_1(BT045031\|pid:none) Salmo salar clone ssal-rgf-510-120... 288 3e-76 BT072304_1(BT072304\|pid:none) Salmo salar clone ssal-rgf-520-280... 288 4e-76 BC089730_1(BC089730\|pid:none) Xenopus tropicalis MGC108369 prote... 287 7e-76 BC060707_1(BC060707\|pid:none) Mus musculus eukaryotic translatio... 285 3e-75 AK161993_1(AK161993\|pid:none) Mus musculus 12 days embryo male w... 285 3e-75
protein update	2009. 7.21
PSORT	psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00 nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: cytoplasmic 36.0 %: nuclear 4.0 %: extracellular, including cell wall 4.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for VHP702 is cyt
5' end seq. ID	VHP702F
5' end seq.	>VHP702F.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTCATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAANNNNNNNNNN
Length of 5' end seq.	615
3' end seq. ID	VHP702Z
3' end seq.	>VHP702Z.Seq NNNNNNNNNNATCTCGCTGATAACCACGAATGGGATAAAAATGATGCCATGAACATTTGG TCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAA TATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGT GTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCAC ACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTAT GCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACT GCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTT ATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTA TTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCA CAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACT GAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGAC AAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAANATAGTAATC AAATCTAAAAAAAA
Length of 3' end seq.	734
Connected seq. ID	VHP702P
Connected seq.	>VHP702P.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTCATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAA----------ATCTCGCTGATAACCACGAATGGGATAAAAATGATGCCATGAACA TTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTG TTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAG AAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCC TCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTAC TCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAA TTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTA TTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTAC CAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTT TCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAG CCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATC TTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAANATAG TAATCAAATCTAAAAAAAA
Length of connected seq.	1329
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas