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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP695
Library VH
(Link to library)
Clone ID VHP695
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHP695P
(Link to Original site)
Representative DNA sequence 
>VHP695 (VHP695Q) /CSM/VH/VHP6-D/VHP695Q.Seq.d/
AAACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATT
CGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGAT
CACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAA
GTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACC
ATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCT
GGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTC
AGTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGC
GTCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATC
AAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACT
GAAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAAC
ACTGAAGXXXXXXXXXXCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGG
TGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAA
AGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATNTTTATGATGTCAC
CCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGT
ACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGA
AATTACTGCCCCAGAAAATGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGG
TATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTNTCTGTCAAAGCTCATTT
ACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGC
TTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAA
AGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGA
TCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAAAAA
TAGTAATCAAATCTAAAAAAAATTTTAAAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
KLSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADK
VSGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDF
SSEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNT
EEAYLSFRRAIESVNVIVGNTE---

---EGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNXYDVTLHT
DAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAIGGIYSVLNRRRGIVI
GEERRIGSPLXSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHWASIGVVNKDKKATE
VALATRKRKGLAPEIPDLDKFHEKL*ti*val*vfknsnqi*kkf*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
KLSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADK
VSGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDF
SSEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNT
EEAYLSFRRAIESVNVIVGNTE---

---qkvtvpisssmspkvfni*mklkilslvlsngppkkvlfvmkt*evsvsxfmmspst
lmpstevvvkssqllvvysmlln*lppqls*nqst**kllpqkmllvvftlysivvevll
lvknvvsvphyxlskliyqy*npsvspliyvptlpvklshnvssiiglqlvlstkirkpl
ksl*pperekv*pqksqiltnstknskqfkshfefskivikskknfkkk

Frame B:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklislsvellnpsmsllvtlk---

---rr*rcqsprqchqrcsife*n*rffrwcfpmghqrrccl**kherypfqxl*chpph
*chpqrwwsnhpncssctlcc*inclpnslrtnllsrnycprkcywwyllctqss*rycy
w*rtsyrfpiixcqssftsirilrfhr*ftfphcrssfptmclrslgfnwccqqr*esh*
srfshqkekrfsprnprs*qiprktlnnlsrtlsfqk**snlkkilkkk

Frame C:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*
rslslfp*sy*irqchcw*h*---

---EGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNXYDVTLHT
DAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAIGGIYSVLNRRRGIVI
GEERRIGSPLXSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHWASIGVVNKDKKATE
VALATRKRKGLAPEIPDLDKFHEKL*ti*val*vfknsnqi*kkf*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP695 (VHP695Q) /CSM/VH/VHP6-D/VHP695Q.Seq.d/                       2413   0.0
VHP749 (VHP749Q) /CSM/VH/VHP7-C/VHP749Q.Seq.d/                       1277   0.0
VHO803 (VHO803Q) /CSM/VH/VHO8-A/VHO803Q.Seq.d/                       1277   0.0
VHO104 (VHO104Q) /CSM/VH/VHO1-A/VHO104Q.Seq.d/                       1277   0.0
VHK310 (VHK310Q) /CSM/VH/VHK3-A/VHK310Q.Seq.d/                       1277   0.0
VHJ871 (VHJ871Q) /CSM/VH/VHJ8-C/VHJ871Q.Seq.d/                       1277   0.0
VHH819 (VHH819Q) /CSM/VH/VHH8-A/VHH819Q.Seq.d/                       1277   0.0
VHD338 (VHD338Q) /CSM/VH/VHD3-B/VHD338Q.Seq.d/                       1277   0.0
VHA220 (VHA220Q) /CSM/VH/VHA2-A/VHA220Q.Seq.d/                       1277   0.0
VHJ296 (VHJ296Q) /CSM/VH/VHJ2-D/VHJ296Q.Seq.d/                       1273   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446502) Dictyostelium discoideum cDNA clone:ddv62m24, 3' ...  1291   0.0    1
(BJ446365) Dictyostelium discoideum cDNA clone:ddv62b13, 3' ...  1277   0.0    1
(BJ445613) Dictyostelium discoideum cDNA clone:ddv60f02, 3' ...  1277   0.0    1
(BJ445302) Dictyostelium discoideum cDNA clone:ddv59g01, 3' ...  1277   0.0    1
(BJ442808) Dictyostelium discoideum cDNA clone:ddv51d03, 3' ...  1277   0.0    1
(BJ442717) Dictyostelium discoideum cDNA clone:ddv50c22, 3' ...  1277   0.0    1
(BJ442693) Dictyostelium discoideum cDNA clone:ddv50n18, 3' ...  1277   0.0    1
(BJ442083) Dictyostelium discoideum cDNA clone:ddv48e20, 3' ...  1277   0.0    1
(BJ441879) Dictyostelium discoideum cDNA clone:ddv48l02, 3' ...  1277   0.0    1
(BJ441851) Dictyostelium discoideum cDNA clone:ddv48g01, 3' ...  1277   0.0    1
dna update 2008.12.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016...   263   8e-69
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation...   261   5e-68
DQ848932_1(DQ848932|pid:none) Scophthalmus maximus clone kbc101 ...   260   9e-68
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat...   258   3e-67
AF248644_1(AF248644|pid:none) Filobasidiella neoformans var. neo...   258   3e-67
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote...   257   7e-67
A40411(A40411) translation elongation factor eEF-2 - Caenorhabdi...   257   7e-67
AF544973_1(AF544973|pid:none) Ctenopharyngodon idella elongation...   257   7e-67
AF083031_87(AF083031|pid:none) Guillardia theta nucleomorph chro...   256   1e-66
(Q6FYA7) RecName: Full=Elongation factor 2;          Short=EF-2;...   256   1e-66
protein update 2009. 7.21
PSORT 

 psg: 0.71  gvh: 0.38  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for VHP695 is cyt
5' end seq. ID VHP695F
5' end seq. 
>VHP695F.Seq
AAACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATT
CGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGAT
CACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAA
GTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACC
ATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCT
GGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTC
AGTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGC
GTCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATC
AAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACT
GAAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAAC
ACTGAAGNNNNNNNNNN
Length of 5' end seq. 617
3' end seq. ID VHP695Z
3' end seq. 
>VHP695Z.Seq
NNNNNNNNNNCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAA
TATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGT
GTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATNTTTATGATGTCACCCTCCAC
ACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTAT
GCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACT
GCCCCAGAAAATGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTT
ATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTNTCTGTCAAAGCTCATTTACCAGTA
TTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCA
CAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACT
GAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGAC
AAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAAAAATAGTAAT
CAAATCTAAAAAAAATTTTAAAAAAAAAA
Length of 3' end seq. 689
Connected seq. ID VHP695P
Connected seq. 
>VHP695P.Seq
AAACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATT
CGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGAT
CACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAA
GTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACC
ATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCT
GGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTC
AGTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGC
GTCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATC
AAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACT
GAAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAAC
ACTGAAG----------CAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGG
TGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAA
AGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATNTTTATGATGTCAC
CCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGT
ACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGA
AATTACTGCCCCAGAAAATGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGG
TATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTNTCTGTCAAAGCTCATTT
ACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGC
TTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAA
AGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGA
TCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAAAAA
TAGTAATCAAATCTAAAAAAAATTTTAAAAAAAAAA
Length of connected seq. 1286
Full length Seq ID -
Full length Seq. -
Length of full length seq. -