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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP688
Library VH
(Link to library)
Clone ID VHP688
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14889-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHP688 (VHP688Q) /CSM/VH/VHP6-D/VHP688Q.Seq.d/
XXXXXXXXXXGTCATGCCAACTACTGGGTTGAATTAAAAGGTGACAATTTGCATTCAACT
CGGCTGCTCTAACTGTAAGTTCTCTGTGTGCTCTATGCATTGGATTACGAGTTTGGAAGG
CGATAACGTTCTCCCAACCTTTGGTTTTAAATAATTCTCTCACTTGAATTGGTGTACGAC
GGAGACCGTTGTAATCGTAGTGTACTGGTAATTGGGCACCCTCAAGCTTGCCGCTTACAT
AGTACTCTTTGGTATTGAAAATTGTGGAAACACCTGGATGGTATGGGTCAATGGATCCCA
TTGTCTTTTTGGCTTCGTTCTCTTTATTTGGTGTATAATAATTTGAAACGGTTAAAACTG
CTATTAAATTTCCCTCTTCATCACGTAATGCCATTTGTTTACTATCGGTTGCTAAAACTG
TATCCAAGCATTCCTTGCTTATATCCAATACTATTGGCATTGGGAATAATAATCCCTCAT
CTTTATCACCATCGATTGTCATGGTTTCAACAACATTATTATAGATGGTTTCGTCCATAA
ATGTACTCAATGGTGAGAAACCACCATTCATCAATAATTCTATATCACATAATTGCTTCT
TTGTTAATAATAAACTTGGTAATGAAATTGATCTTTGTTTTAATTCTACTAATTCTTCTC
CTTCTAAAATTAAATTTATTAATTCTCCGCCATGTGGGAT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---hanywvelkgdnlhstrll*l*vlcvlyaldyefgrr*rspnlwf*iilslelvydg
drcnrsvlvighpqacrlhstlwy*KLWKHLDGMGQWIPLSFWLRSLYLVYNNLKRLKLL
LNFPLHHVMPFVYYRLLKLYPSIPCLYPILLALGIIIPHLYHHRLSWFQQHYYRWFRP*m
ysmvrnhhssiilyhiiaslliinlvmklifvlillillllklnllilrhvg
Translated Amino Acid sequence (All Frames) 
Frame A:
---scqllg*ikr*qfafnsaaltvsslcalciglrvwkaitfsqplvlnnslt*igvrr
rpl*s*ctgnwapsslplt*yslvlkivetpgwygsmdpivflasfslfgv**fetvkta
ikfpsssrnaicllsvaktvskhsllisntigignnnpsslspsivmvsttll*mvssin
vlngekppfinnsishncffvnnklgneidlcfnstnsspskikfinsppcg


Frame B:
---hanywvelkgdnlhstrll*l*vlcvlyaldyefgrr*rspnlwf*iilslelvydg
drcnrsvlvighpqacrlhstlwy*KLWKHLDGMGQWIPLSFWLRSLYLVYNNLKRLKLL
LNFPLHHVMPFVYYRLLKLYPSIPCLYPILLALGIIIPHLYHHRLSWFQQHYYRWFRP*m
ysmvrnhhssiilyhiiaslliinlvmklifvlillillllklnllilrhvg


Frame C:
---mpttgln*kvticiqlgcsnckfsvcsmhwitslegdnvlptfgfk*fshlnwctte
tvvivvyw*lgtlklaayivlfgiencgntwmvwvngshclfgfvlfiwciii*ng*ncy
*islfit*chlftigc*nciqaflayiqyywhwe**slifitidchgfnniiidgfvhkc
tqw*ettihq*fyit*lllc***tw**n*slf*fy*ffsf*n*iy*fsamwd
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP688 (VHP688Q) /CSM/VH/VHP6-D/VHP688Q.Seq.d/                       1368   0.0
VHL736 (VHL736Q) /CSM/VH/VHL7-B/VHL736Q.Seq.d/                         40   0.044
VHH207 (VHH207Q) /CSM/VH/VHH2-A/VHH207Q.Seq.d/                         38   0.18
VHC512 (VHC512Q) /CSM/VH/VHC5-A/VHC512Q.Seq.d/                         38   0.18
VFN204 (VFN204Q) /CSM/VF/VFN2-A/VFN204Q.Seq.d/                         38   0.18
VFM541 (VFM541Q) /CSM/VF/VFM5-B/VFM541Q.Seq.d/                         38   0.18
VFJ269 (VFJ269Q) /CSM/VF/VFJ2-C/VFJ269Q.Seq.d/                         38   0.18
SFK623 (SFK623Q) /CSM/SF/SFK6-A/SFK623Q.Seq.d/                         38   0.18
SFF158 (SFF158Q) /CSM/SF/SFF1-C/SFF158Q.Seq.d/                         38   0.18
SFE786 (SFE786Q) /CSM/SF/SFE7-D/SFE786Q.Seq.d/                         38   0.18
own update 2004. 8. 5
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL393315|AL393315.1 T3 end of clone AR0AA010B12 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    60   1e-07  3
AL405446|AL405446.1 T3 end of clone AU0AA004D05 of library AU0AA from strain CBS 3082 of Saccharomyces kluyveri.    66   7e-07  1
X87611|X87611.1 S.cerevisiae chromosome X DNA (cosmid 83).         62   6e-06  4
X60157|X60157.1 S.cerevisiae MET3 & TDH2 genes for ATP sulflurase (ATP:sulfate adenylyltransferase) and glyceraldehyde-3-phosphate dehydrogenase.    62   1e-05  1
Z49510|Z49510.1 S.cerevisiae chromosome X reading frame ORF YJR010w.    62   1e-05  1
X06413|X06413.1 Yeast MET3 gene for ATP sulphurylase.              62   1e-05  1
AC131224|AC131224.3 Rattus norvegicus clone CH230-154I12, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    38   3e-04  8
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    34   0.025  11
BU002837|BU002837.1 QGG33C17.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGG33C17, mRNA sequence.    34   0.031  2
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36   0.084  7
dna update 2003.10.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8TG24) RecName: Full=Sulfate adenylyltransferase;          EC=...   191   1e-47
AY035556_1(AY035556|pid:none) Cryptococcus neoformans var. grubi...   191   1e-47
(Q5KB71) RecName: Full=Sulfate adenylyltransferase;          EC=...   189   5e-47
(Q1EAF9) RecName: Full=Sulfate adenylyltransferase;          EC=...   186   8e-46
(Q4I1N3) RecName: Full=Sulfate adenylyltransferase;          EC=...   185   1e-45
CP000031_880(CP000031|pid:none) Ruegeria pomeroyi DSS-3, complet...   184   2e-45
CP000661_253(CP000661|pid:none) Rhodobacter sphaeroides ATCC 170...   183   5e-45
CP000577_226(CP000577|pid:none) Rhodobacter sphaeroides ATCC 170...   182   1e-44
CP000377_612(CP000377|pid:none) Silicibacter sp. TM1040, complet...   181   2e-44
X06413_1(X06413|pid:none) Yeast MET3 gene for ATP sulphurylase. ...   179   6e-44
protein update 2009. 7.21
PSORT 

 psg: 0.93  gvh: 0.51  alm: 0.28  top: 0.53  tms: 0.07  mit: 0.50  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.18  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VHP688 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHP688Z
3' end seq. 
>VHP688Z.Seq
NNNNNNNNNNGTCATGCCAACTACTGGGTTGAATTAAAAGGTGACAATTTGCATTCAACT
CGGCTGCTCTAACTGTAAGTTCTCTGTGTGCTCTATGCATTGGATTACGAGTTTGGAAGG
CGATAACGTTCTCCCAACCTTTGGTTTTAAATAATTCTCTCACTTGAATTGGTGTACGAC
GGAGACCGTTGTAATCGTAGTGTACTGGTAATTGGGCACCCTCAAGCTTGCCGCTTACAT
AGTACTCTTTGGTATTGAAAATTGTGGAAACACCTGGATGGTATGGGTCAATGGATCCCA
TTGTCTTTTTGGCTTCGTTCTCTTTATTTGGTGTATAATAATTTGAAACGGTTAAAACTG
CTATTAAATTTCCCTCTTCATCACGTAATGCCATTTGTTTACTATCGGTTGCTAAAACTG
TATCCAAGCATTCCTTGCTTATATCCAATACTATTGGCATTGGGAATAATAATCCCTCAT
CTTTATCACCATCGATTGTCATGGTTTCAACAACATTATTATAGATGGTTTCGTCCATAA
ATGTACTCAATGGTGAGAAACCACCATTCATCAATAATTCTATATCACATAATTGCTTCT
TTGTTAATAATAAACTTGGTAATGAAATTGATCTTTGTTTTAATTCTACTAATTCTTCTC
CTTCTAAAATTAAATTTATTAATTCTCCGCCATGTGGGAT
Length of 3' end seq. 700
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -