VHP679 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHP679
Library	VH (Link to library)
Clone ID	VHP679 (Link to dictyBase)
Atlas ID	-
NBRP ID	G23570
dictyBase ID	DDB0215379
Link to Contig	Contig-U11979-1\|Contig-U13572-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHP6-D/VHP679Q.Seq.d/
Representative seq. ID	VHP679P (Link to Original site)
Representative DNA sequence	>VHP679 (VHP679Q) /CSM/VH/VHP6-D/VHP679Q.Seq.d/ ATTCCAGAATATTCAGAACTTAGTTCTATTGAAGGTCTTGTTGAAGGCGCTACCTTGGAA ATGGTACCAGTCGATTACAATGAGAGATCAGCAAAATTACACGTTAAAAGATTAAGAGAT ATTATGAATACAGGTTTAACAGAATTTGCCAATATGAATAATCCAAGTCTTTTCACAAGT TTTTCATTCCCAGAGAAATCAAATATTTTAACTGAAGAACAACAATTAGAAGAACAAAAA CAAAAATTTGAACAACAACAACAACAACAACAACAAACTGAAGATAAAGAGGAAAAAGAA ACTATAGCAGCTGAACAACAACAAAATAAAAAGAATAAACATCATAATAAAAAAGGTAAT AAAAAGAATAATGGTGATGAATCATTGAATAATGAAAATAATGAAGAGAAGTTAACACCA CAACAAAAAGAGAGAAAACAAAAGATGACAGAGATTAAAGGTATTGATAAACCAATGTTA AGTAGTTATTATCCAGAGAGTCCAATTGCACCAGTTCAATGTGTTAAATCAATGATTTAC AGTGGTTGGTCACCAGTACCAGGATATAGAAXXXXXXXXXXCACTCATTTGGCTATGTTG GCATACCAAAATGAACAATACGATCTTGCAATCGAGTATCAAAAGAATGCATTGGTCATC ACAGAGAAAACCGCTGGTCTCGATCATCATGAAACCGTTCAAGCTTACACCACATTGGCC GTTTTCTGTCAACGTTCTGGTCGTTACAATGAATCCATTGGTTATATGAAACATGTCTTA TACCTCACCGATCTCTTAGGTGGTGAATATAACCCAGAACGTGCTTCAATCTACACTGCT ATCGCTGCAATTCTCGAAGATACTGAACGTTTCGATTTGGCTTTGGAATTCTTAAAGCAA ACCTTAAAACACCAAGAATTCCTCTTCACACCAGATCATCTCATGTGTTCAACCACCTAT CATAAGATGGCTATCGTTTGTGCTCGTGCTACAAACTTTGATGACTCTATCATTCACCAA AAGAAATCAACCGATATCTTGGAGAAAGAATTGGGTGAAGCTCATCCACGTACTAAAGAA TCTTTGGAATTCTACACTGGTCTCAGTCAAACTGCTAACCAAATTAAACTTTTCAAACAA CATCAAGCCTTGAAAGCTGAACAAGATGAATTGGCTAGATTACAAAAAGAAAAAGCTGAT CAATTCAAAAAATCACAACCACGTGTCTCTGCTATGCCACCTTCACTGAAAATGGTAGTG TCTCGAATTATTAAATTATATAAAGGTAAACCAAAGAAA
sequence update	2002.10.25
Translated Amino Acid sequence	IPEYSELSSIEGLVEGATLEMVPVDYNERSAKLHVKRLRDIMNTGLTEFANMNNPSLFTS FSFPEKSNILTEEQQLEEQKQKFEQQQQQQQQTEDKEEKETIAAEQQQNKKNKHHNKKGN KKNNGDESLNNENNEEKLTPQQKERKQKMTEIKGIDKPMLSSYYPESPIAPVQCVKSMIY SGWSPVPGYR--- ---THLAMLAYQNEQYDLAIEYQKNALVITEKTAGLDHHETVQAYTTLAVFCQRSGRYNE SIGYMKHVLYLTDLLGGEYNPERASIYTAIAAILEDTERFDLALEFLKQTLKHQEFLFTP DHLMCSTTYHKMAIVCARATNFDDSIIHQKKSTDILEKELGEAHPRTKESLEFYTGLSQT ANQIKLFKQHQALKAEQDELARLQKEKADQFKKSQPRVSAMPPSLKMVVSRIIKLYKGKP KK
Translated Amino Acid sequence (All Frames)	Frame A: IPEYSELSSIEGLVEGATLEMVPVDYNERSAKLHVKRLRDIMNTGLTEFANMNNPSLFTS FSFPEKSNILTEEQQLEEQKQKFEQQQQQQQQTEDKEEKETIAAEQQQNKKNKHHNKKGN KKNNGDESLNNENNEEKLTPQQKERKQKMTEIKGIDKPMLSSYYPESPIAPVQCVKSMIY SGWSPVPGYR--- ---hsfgyvgipktirscnrvskecighhrenrwsrssnrsslhhigrflstfwslq* ihwlyetcliphrslrwiprtcfnlhcyrcnsrrytfrfgfgilkanlktpriplht rsshvfnhlsdgyrlcscykl*lyhspkeinrylgerigssstyrifgilhwsqsn cpntfqttsslestrigitkrkssiqkitttclcyatftengsvsnyiirt ke Frame B: fqniqnlvllkvllkalpwkwyqsitmrdqqnytlkdeiliqvqnlpiiiqvfsqv fhsqrnqiflknnnknknknlnnnnnnnnklkikrkkklqlnnnkikriniiikkvi krimvmnhimkimkrshhnkkrenkrqrlkvlinqcvviiqrvqlhqfnvlnqft vvghqyqdie--- ---THLAMLAYQNEQYDLAIEYQKNALVITEKTAGLDHHETVQAYTTLAVFCQRSGRYNE SIGYMKHVLYLTDLLGGEYNPERASIYTAIAAILEDTERFDLALEFLKQTLKHQEFLFTP DHLMCSTTYHKMAIVCARATNFDDSIIHQKKSTDILEKELGEAHPRTKESLEFYTGLSQT ANQIKLFKQHQALKAEQDELARLQKEKADQFKKSQPRVSAMPPSLKMVVSRIIKLYKGKP KK Frame C: srifrtfyrscrrylgngtsrlqeiskitrkikryyeyrfnricqyesksfhkf fipreikyfnrttirrtktkittttttttnrrgkrnysstttkketskr* kewiiekrevntttkrektkddrdry*tnvkllsresnctssmcindlq wlvtstri--- ---liwlcwhtkmnntilqssikrmhwssqrkplvsiimkpfkltphwpfsvnvlvvtmn plvinmsytspisvvnitqnvlqstllslqfskilnvsiwlwnsskpntknssshq iiscvqppiirwlsfvlvlqtlmtlsftkrnqpiswrknwvklihvlknlwnstlvsvkl ltklnfsnnikpklnkmnwldykkkklinsknhnhvsllchlhkw*clellnyikvnq r
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHP679 (VHP679Q) /CSM/VH/VHP6-D/VHP679Q.Seq.d/ 1717 0.0 VHG150 (VHG150Q) /CSM/VH/VHG1-C/VHG150Q.Seq.d/ 1112 0.0 VHC359 (VHC359Q) /CSM/VH/VHC3-C/VHC359Q.Seq.d/ 841 0.0 CHM329 (CHM329Q) /CSM/CH/CHM3-B/CHM329Q.Seq.d/ 40 0.083 CHK542 (CHK542Q) /CSM/CH/CHK5-B/CHK542Q.Seq.d/ 40 0.083 AHR336 (AHR336Q) /CSM/AH/AHR3-B/AHR336Q.Seq.d/ 40 0.083 AHJ786 (AHJ786Q) /CSM/AH/AHJ7-D/AHJ786Q.Seq.d/ 40 0.083 AFE571 (AFE571Q) /CSM/AF/AFE5-C/AFE571Q.Seq.d/ 40 0.083 SLF612 (SLF612Q) /CSM/SL/SLF6-A/SLF612Q.Seq.d/ 38 0.33 FC-BQ03 (FC-BQ03Q) /CSM/FC/FC-BQ/FC-BQ03Q.Seq.d/ 38 0.33
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446499) Dictyostelium discoideum cDNA clone:ddv62m20, 3' ... 1423 0.0 1 (U49332) Dictyostelium discoideum 150-kD protein (cluA) mRNA... 1312 0.0 4 (BJ440382) Dictyostelium discoideum cDNA clone:ddv43c13, 3' ... 1043 0.0 2 (BJ437845) Dictyostelium discoideum cDNA clone:ddv35f15, 3' ... 761 0.0 5 (BJ427590) Dictyostelium discoideum cDNA clone:ddv62m20, 5' ... 414 0.0 2 (BJ419265) Dictyostelium discoideum cDNA clone:ddv35f15, 5' ... 317 6e-82 1 (EI252157) ZMMBBc0294F04.fv ZMMBB_VAL Zea mays genomic clone... 48 0.84 1 (AC116475) Mus musculus chromosome 8, clone RP23-386N2, comp... 46 3.3 1 (CX108412) BI148P14 A normalized whole-life-cycle cDNA libra... 46 3.3 1 (CT850617) Oryza sativa Indica Group EST sequence:OSIGCRN110... 46 3.3 1
dna update	2008.12.21
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (O15818) RecName: Full=Protein KIAA0664 homolog; 453 e-126 BT062562_1(BT062562\|pid:none) Zea mays full-length cDNA clone ZM... 102 3e-20 AC023628_12(AC023628\|pid:none) Arabidopsis thaliana chromosome I... 98 7e-19 AP005248_1(AP005248\|pid:none) Oryza sativa Japonica Group genomi... 97 1e-18 AL607024_2(AL607024\|pid:none) Mouse DNA sequence from clone RP23... 95 5e-18 AK154146_1(AK154146\|pid:none) Mus musculus NOD-derived CD11c +ve... 95 5e-18 AK154925_1(AK154925\|pid:none) Mus musculus NOD-derived CD11c +ve... 95 5e-18 BC060069_1(BC060069\|pid:none) Mus musculus RIKEN cDNA 1300001I01... 95 5e-18 (A0JMD0) RecName: Full=Protein KIAA0664 homolog; &BC125829_1(BC... 95 5e-18 AK157310_1(AK157310\|pid:none) Mus musculus activated spleen cDNA... 95 5e-18
protein update	2009. 7.21
PSORT	psg: 0.75 gvh: 0.39 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00 nuc: 0.07 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: nuclear 36.0 %: cytoplasmic 8.0 %: vacuolar 8.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for VHP679 is nuc
5' end seq. ID	VHP679F
5' end seq.	>VHP679F.Seq ATTCCAGAATATTCAGAACTTAGTTCTATTGAAGGTCTTGTTGAAGGCGCTACCTTGGAA ATGGTACCAGTCGATTACAATGAGAGATCAGCAAAATTACACGTTAAAAGATTAAGAGAT ATTATGAATACAGGTTTAACAGAATTTGCCAATATGAATAATCCAAGTCTTTTCACAAGT TTTTCATTCCCAGAGAAATCAAATATTTTAACTGAAGAACAACAATTAGAAGAACAAAAA CAAAAATTTGAACAACAACAACAACAACAACAACAAACTGAAGATAAAGAGGAAAAAGAA ACTATAGCAGCTGAACAACAACAAAATAAAAAGAATAAACATCATAATAAAAAAGGTAAT AAAAAGAATAATGGTGATGAATCATTGAATAATGAAAATAATGAAGAGAAGTTAACACCA CAACAAAAAGAGAGAAAACAAAAGATGACAGAGATTAAAGGTATTGATAAACCAATGTTA AGTAGTTATTATCCAGAGAGTCCAATTGCACCAGTTCAATGTGTTAAATCAATGATTTAC AGTGGTTGGTCACCAGTACCAGGATATAGAANNNNNNNNNN
Length of 5' end seq.	581
3' end seq. ID	VHP679Z
3' end seq.	>VHP679Z.Seq NNNNNNNNNNCACTCATTTGGCTATGTTGGCATACCAAAATGAACAATACGATCTTGCAA TCGAGTATCAAAAGAATGCATTGGTCATCACAGAGAAAACCGCTGGTCTCGATCATCATG AAACCGTTCAAGCTTACACCACATTGGCCGTTTTCTGTCAACGTTCTGGTCGTTACAATG AATCCATTGGTTATATGAAACATGTCTTATACCTCACCGATCTCTTAGGTGGTGAATATA ACCCAGAACGTGCTTCAATCTACACTGCTATCGCTGCAATTCTCGAAGATACTGAACGTT TCGATTTGGCTTTGGAATTCTTAAAGCAAACCTTAAAACACCAAGAATTCCTCTTCACAC CAGATCATCTCATGTGTTCAACCACCTATCATAAGATGGCTATCGTTTGTGCTCGTGCTA CAAACTTTGATGACTCTATCATTCACCAAAAGAAATCAACCGATATCTTGGAGAAAGAAT TGGGTGAAGCTCATCCACGTACTAAAGAATCTTTGGAATTCTACACTGGTCTCAGTCAAA CTGCTAACCAAATTAAACTTTTCAAACAACATCAAGCCTTGAAAGCTGAACAAGATGAAT TGGCTAGATTACAAAAAGAAAAAGCTGATCAATTCAAAAAATCACAACCACGTGTCTCTG CTATGCCACCTTCACTGAAAATGGTAGTGTCTCGAATTATTAAATTATATAAAGGTAAAC CAAAGAAA
Length of 3' end seq.	728
Connected seq. ID	VHP679P
Connected seq.	>VHP679P.Seq ATTCCAGAATATTCAGAACTTAGTTCTATTGAAGGTCTTGTTGAAGGCGCTACCTTGGAA ATGGTACCAGTCGATTACAATGAGAGATCAGCAAAATTACACGTTAAAAGATTAAGAGAT ATTATGAATACAGGTTTAACAGAATTTGCCAATATGAATAATCCAAGTCTTTTCACAAGT TTTTCATTCCCAGAGAAATCAAATATTTTAACTGAAGAACAACAATTAGAAGAACAAAAA CAAAAATTTGAACAACAACAACAACAACAACAACAAACTGAAGATAAAGAGGAAAAAGAA ACTATAGCAGCTGAACAACAACAAAATAAAAAGAATAAACATCATAATAAAAAAGGTAAT AAAAAGAATAATGGTGATGAATCATTGAATAATGAAAATAATGAAGAGAAGTTAACACCA CAACAAAAAGAGAGAAAACAAAAGATGACAGAGATTAAAGGTATTGATAAACCAATGTTA AGTAGTTATTATCCAGAGAGTCCAATTGCACCAGTTCAATGTGTTAAATCAATGATTTAC AGTGGTTGGTCACCAGTACCAGGATATAGAA----------CACTCATTTGGCTATGTTG GCATACCAAAATGAACAATACGATCTTGCAATCGAGTATCAAAAGAATGCATTGGTCATC ACAGAGAAAACCGCTGGTCTCGATCATCATGAAACCGTTCAAGCTTACACCACATTGGCC GTTTTCTGTCAACGTTCTGGTCGTTACAATGAATCCATTGGTTATATGAAACATGTCTTA TACCTCACCGATCTCTTAGGTGGTGAATATAACCCAGAACGTGCTTCAATCTACACTGCT ATCGCTGCAATTCTCGAAGATACTGAACGTTTCGATTTGGCTTTGGAATTCTTAAAGCAA ACCTTAAAACACCAAGAATTCCTCTTCACACCAGATCATCTCATGTGTTCAACCACCTAT CATAAGATGGCTATCGTTTGTGCTCGTGCTACAAACTTTGATGACTCTATCATTCACCAA AAGAAATCAACCGATATCTTGGAGAAAGAATTGGGTGAAGCTCATCCACGTACTAAAGAA TCTTTGGAATTCTACACTGGTCTCAGTCAAACTGCTAACCAAATTAAACTTTTCAAACAA CATCAAGCCTTGAAAGCTGAACAAGATGAATTGGCTAGATTACAAAAAGAAAAAGCTGAT CAATTCAAAAAATCACAACCACGTGTCTCTGCTATGCCACCTTCACTGAAAATGGTAGTG TCTCGAATTATTAAATTATATAAAGGTAAACCAAAGAAA
Length of connected seq.	1289
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas