NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP670
Library VH
(Link to library)
Clone ID VHP670
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12327-1
Original site URL
Representative seq. ID VHP670P
(Link to Original site)
Representative DNA sequence 
>VHP670 (VHP670Q) /CSM/VH/VHP6-C/VHP670Q.Seq.d/
AAATCTTGAACCATCATCAACTGATGGTATAGTAAATATTGATCTCTCTCAATTAGTAGA
AGCTGGTTCAACAATTCATATCCATGCCGTTGATAATGATTCTATCTTTACAAAAGAGAT
TGTTATTTCTGATCCATCATCATCATCATCGATTAATCATTTCAAAGATACTAAATTAGT
TAGACCATTGGATTCATCTTTACATTATAAAGAAGAGAAATTAATTACAACTGTTGAACC
AAATTCACCATTTGAAATCTTAAATGTAAACTCTTCAAAATATACAGTATACGATAGTTT
AGATAAAGTTTTATCTTTAATGAAAACTTTGAATAAGAGTTATCTTCAAGATTTTTCTTT
CATTGCAGAATGGGAATCATTATCATTTGAAAAGAAGAAAGAGAAATTCTCAAAGTTCAC
TTGCCATGAATTAAACTTTTTCATCTATAAAAAGGATAAGGAATTCTTTGATCAAGTTGT
ATTACCATTGGTTCAAACTAAAGGTTATAAAACATTCATTGATCATTATTTATGTGCCGA
TAGAAAGAAATTGGAAATATTTGTTATCGATTCAAATAXXXXXXXXXXATATTATTGCCA
ATGTTACACCATTCACCTTTAGTGTAGTTTTAAAACCATCTATTGTCAATCATTTATCAT
GGGAATACATTGCAAATCAAGGTACATTGGAATCAATCTTGGAATATTTATCAAAGAACA
ATTTGTATCGTGTTGATTTCTATCATCTCTATCATAGATATACCGATAAGAAAGTTTGGG
ATAAAGTAATTGAACTCTTAAAGAAATTGAAATTCTATGAATCTATCACTTGGTCATTCT
CTATTCATCATAAGAATTTCGTTTACTTGAAAGATTACCTCTCTGAACAAATTCATTCCT
TATCAATGAAATCAATCGATGCACCATCCATTTATGTTGATCCATTTGAAAATAACTTCA
TCAAATTCTTGGAATACTCTCCATTGGTTAATTCAAGAACTCATCAAATTGGTGATGAAA
GAAAGATTCTTAATAATAAATTATCAAATCAATATTATGAATTCTGTAGTTTACTTTCAT
TGAAATTAAATCCATCCGATACTGAATTACTTTCTTTAGCTTATTATTTATTACTTCAAG
ATAGATTTGATGAATCAATTAAAATTATGAAGAGAATTGGTAAACATCCAGTTTCAATTC
CAAAATTAATTTCTTCTTCAACCACTACTGATTCAAAATCAACTCATTCATCAGTAATTT
CTTCTTCTTCCTCTTCAAATTTATCAACCACTACTGATAGTTCAAAAGNATAAAAAGAAA
CTGAAAAAGAAGAAAAACAAGNANAAAAAGAAAGAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
NLEPSSTDGIVNIDLSQLVEAGSTIHIHAVDNDSIFTKEIVISDPSSSSSINHFKDTKLV
RPLDSSLHYKEEKLITTVEPNSPFEILNVNSSKYTVYDSLDKVLSLMKTLNKSYLQDFSF
IAEWESLSFEKKKEKFSKFTCHELNFFIYKKDKEFFDQVVLPLVQTKGYKTFIDHYLCAD
RKKLEIFVIDSN---

---IIANVTPFTFSVVLKPSIVNHLSWEYIANQGTLESILEYLSKNNLYRVDFYHLYHRY
TDKKVWDKVIELLKKLKFYESITWSFSIHHKNFVYLKDYLSEQIHSLSMKSIDAPSIYVD
PFENNFIKFLEYSPLVNSRTHQIGDERKILNNKLSNQYYEFCSLLSLKLNPSDTELLSLA
YYLLLQDRFDESIKIMKRIGKHPVSIPKLISSSTTTDSKSTHSSVISSSSSSNLSTTTDS
SKX*ketekeekqxxkerk
Translated Amino Acid sequence (All Frames) 
Frame A:
ks*tiin*wysky*slsisrswfnnsypcr***fylykrdcyf*siiiiid*sfqry*is
*tigfiftl*rreinync*tkfti*nlkcklfkiysir*fr*sfifnenfe*elssrfff
hcrmgiiii*keereilkvhlp*iklfhl*kg*gil*sscitigsn*rl*nih*slfmcr
*keignicyrfk---

---illpmlhhsplv*f*nhllsiiyhgntlqikvhwnqswniyqrticivlisiisiid
ipirkfgik*lns*rn*nsmnlslghslfiirisft*kitslnkfipyq*nqsmhhpfml
ihlkitssnswntlhwliqeliklvmkerfliinyqinimnsvvyfh*n*ihpilnyfl*
liiyyfkidlmnqlkl*relvniqfqfqn*fllqplliqnqlihq*flllplqiyqplli
vqkxkkklkkkknkxkkke

Frame B:
NLEPSSTDGIVNIDLSQLVEAGSTIHIHAVDNDSIFTKEIVISDPSSSSSINHFKDTKLV
RPLDSSLHYKEEKLITTVEPNSPFEILNVNSSKYTVYDSLDKVLSLMKTLNKSYLQDFSF
IAEWESLSFEKKKEKFSKFTCHELNFFIYKKDKEFFDQVVLPLVQTKGYKTFIDHYLCAD
RKKLEIFVIDSN---

---yycqcytihl*csfktiycqsfimgihcksryiginlgifikeqfvsc*flssls*i
yr*eslg*sn*tlkeieil*iyhlvilyss*efrllerlpl*tnsflineinrctihlc*
si*k*lhqilgilsig*fknssnw**kkds***iiksil*il*ftfieiksiry*itffs
llfitsr*i**in*nyeenw*tssfnskinfffnhy*fkinsfisnfffflfkfinhy**
fkxikrn*krrktxxkrkk

Frame C:
ilnhhqlmv**ilisln**klvqqfismplimilslqkrllflihhhhhrliiskiln*l
dhwihlyiikkrn*lqllnqihhlks*m*tlqniqytiv*ikfyl**kl*irvifkifls
lqngnhyhlkrrkrnsqsslamn*tfssikrirnsliklyyhwfklkvikhsliiiyvpi
ernwkyllsiqi---

---IIANVTPFTFSVVLKPSIVNHLSWEYIANQGTLESILEYLSKNNLYRVDFYHLYHRY
TDKKVWDKVIELLKKLKFYESITWSFSIHHKNFVYLKDYLSEQIHSLSMKSIDAPSIYVD
PFENNFIKFLEYSPLVNSRTHQIGDERKILNNKLSNQYYEFCSLLSLKLNPSDTELLSLA
YYLLLQDRFDESIKIMKRIGKHPVSIPKLISSSTTTDSKSTHSSVISSSSSSNLSTTTDS
SKX*ketekeekqxxkerk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP670 (VHP670Q) /CSM/VH/VHP6-C/VHP670Q.Seq.d/                       2524   0.0
VHC649 (VHC649Q) /CSM/VH/VHC6-C/VHC649Q.Seq.d/                       1417   0.0
VHB392 (VHB392Q) /CSM/VH/VHB3-D/VHB392Q.Seq.d/                       1417   0.0
VHA602 (VHA602Q) /CSM/VH/VHA6-A/VHA602Q.Seq.d/                       1409   0.0
CHG769 (CHG769Q) /CSM/CH/CHG7-C/CHG769Q.Seq.d/                       1400   0.0
VHI335 (VHI335Q) /CSM/VH/VHI3-B/VHI335Q.Seq.d/                       1394   0.0
VHP284 (VHP284Q) /CSM/VH/VHP2-D/VHP284Q.Seq.d/                       1302   0.0
VHC626 (VHC626Q) /CSM/VH/VHC6-B/VHC626Q.Seq.d/                       1302   0.0
VHN485 (VHN485Q) /CSM/VH/VHN4-D/VHN485Q.Seq.d/                       1298   0.0
VHH672 (VHH672Q) /CSM/VH/VHH6-C/VHH672Q.Seq.d/                       1296   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446414) Dictyostelium discoideum cDNA clone:ddv62k18, 3' ...  1417   0.0    1
(BJ438138) Dictyostelium discoideum cDNA clone:ddv36a14, 3' ...  1417   0.0    1
(BJ437305) Dictyostelium discoideum cDNA clone:ddv33h23, 3' ...  1417   0.0    1
(BJ436710) Dictyostelium discoideum cDNA clone:ddv32c02, 3' ...  1409   0.0    1
(BJ379675) Dictyostelium discoideum cDNA clone:ddc35j17, 3' ...  1400   0.0    1
(BJ441625) Dictyostelium discoideum cDNA clone:ddv47f09, 3' ...  1392   0.0    1
(BJ446155) Dictyostelium discoideum cDNA clone:ddv61g22, 3' ...  1302   0.0    1
(BJ438066) Dictyostelium discoideum cDNA clone:ddv36c08, 3' ...  1302   0.0    1
(BJ441438) Dictyostelium discoideum cDNA clone:ddv46o18, 3' ...  1296   0.0    1
(BJ444237) Dictyostelium discoideum cDNA clone:ddv55p18, 3' ...  1257   0.0    2
dna update 2008.12.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000685_1285(CP000685|pid:none) Flavobacterium johnsoniae UW101...    40   0.26
CP000716_500(CP000716|pid:none) Thermosipho melanesiensis BI429,...    39   0.57
AL844502_134(AL844502|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.74
AL034556_3(AL034556|pid:none) Plasmodium falciparum MAL3P5, comp...    38   0.97
AL844507_40(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    38   0.97
CP000551_1069(CP000551|pid:none) Prochlorococcus marinus str. AS...    37   2.2
AL935258_170(AL935258|pid:none) Lactobacillus plantarum strain W...    36   2.8
AL844507_89(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    36   2.8
CP000111_1067(CP000111|pid:none) Prochlorococcus marinus str. MI...    36   3.7
CP000409_33(CP000409|pid:none) Rickettsia canadensis str. McKiel...    35   4.8
protein update 2009. 7.21
PSORT 

 psg: 0.75  gvh: 0.50  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: peroxisomal

>> prediction for VHP670 is cyt
5' end seq. ID VHP670F
5' end seq. 
>VHP670F.Seq
AAATCTTGAACCATCATCAACTGATGGTATAGTAAATATTGATCTCTCTCAATTAGTAGA
AGCTGGTTCAACAATTCATATCCATGCCGTTGATAATGATTCTATCTTTACAAAAGAGAT
TGTTATTTCTGATCCATCATCATCATCATCGATTAATCATTTCAAAGATACTAAATTAGT
TAGACCATTGGATTCATCTTTACATTATAAAGAAGAGAAATTAATTACAACTGTTGAACC
AAATTCACCATTTGAAATCTTAAATGTAAACTCTTCAAAATATACAGTATACGATAGTTT
AGATAAAGTTTTATCTTTAATGAAAACTTTGAATAAGAGTTATCTTCAAGATTTTTCTTT
CATTGCAGAATGGGAATCATTATCATTTGAAAAGAAGAAAGAGAAATTCTCAAAGTTCAC
TTGCCATGAATTAAACTTTTTCATCTATAAAAAGGATAAGGAATTCTTTGATCAAGTTGT
ATTACCATTGGTTCAAACTAAAGGTTATAAAACATTCATTGATCATTATTTATGTGCCGA
TAGAAAGAAATTGGAAATATTTGTTATCGATTCAAATANNNNNNNNNN
Length of 5' end seq. 588
3' end seq. ID VHP670Z
3' end seq. 
>VHP670Z.Seq
NNNNNNNNNNATATTATTGCCAATGTTACACCATTCACCTTTAGTGTAGTTTTAAAACCA
TCTATTGTCAATCATTTATCATGGGAATACATTGCAAATCAAGGTACATTGGAATCAATC
TTGGAATATTTATCAAAGAACAATTTGTATCGTGTTGATTTCTATCATCTCTATCATAGA
TATACCGATAAGAAAGTTTGGGATAAAGTAATTGAACTCTTAAAGAAATTGAAATTCTAT
GAATCTATCACTTGGTCATTCTCTATTCATCATAAGAATTTCGTTTACTTGAAAGATTAC
CTCTCTGAACAAATTCATTCCTTATCAATGAAATCAATCGATGCACCATCCATTTATGTT
GATCCATTTGAAAATAACTTCATCAAATTCTTGGAATACTCTCCATTGGTTAATTCAAGA
ACTCATCAAATTGGTGATGAAAGAAAGATTCTTAATAATAAATTATCAAATCAATATTAT
GAATTCTGTAGTTTACTTTCATTGAAATTAAATCCATCCGATACTGAATTACTTTCTTTA
GCTTATTATTTATTACTTCAAGATAGATTTGATGAATCAATTAAAATTATGAAGAGAATT
GGTAAACATCCAGTTTCAATTCCAAAATTAATTTCTTCTTCAACCACTACTGATTCAAAA
TCAACTCATTCATCAGTAATTTCTTCTTCTTCCTCTTCAAATTTATCAACCACTACTGAT
AGTTCAAAAGNATAAAAAGAAACTGAAAAAGAAGAAAAACAAGNANAAAAAGAAAGAAAA
Length of 3' end seq. 780
Connected seq. ID VHP670P
Connected seq. 
>VHP670P.Seq
AAATCTTGAACCATCATCAACTGATGGTATAGTAAATATTGATCTCTCTCAATTAGTAGA
AGCTGGTTCAACAATTCATATCCATGCCGTTGATAATGATTCTATCTTTACAAAAGAGAT
TGTTATTTCTGATCCATCATCATCATCATCGATTAATCATTTCAAAGATACTAAATTAGT
TAGACCATTGGATTCATCTTTACATTATAAAGAAGAGAAATTAATTACAACTGTTGAACC
AAATTCACCATTTGAAATCTTAAATGTAAACTCTTCAAAATATACAGTATACGATAGTTT
AGATAAAGTTTTATCTTTAATGAAAACTTTGAATAAGAGTTATCTTCAAGATTTTTCTTT
CATTGCAGAATGGGAATCATTATCATTTGAAAAGAAGAAAGAGAAATTCTCAAAGTTCAC
TTGCCATGAATTAAACTTTTTCATCTATAAAAAGGATAAGGAATTCTTTGATCAAGTTGT
ATTACCATTGGTTCAAACTAAAGGTTATAAAACATTCATTGATCATTATTTATGTGCCGA
TAGAAAGAAATTGGAAATATTTGTTATCGATTCAAATA----------ATATTATTGCCA
ATGTTACACCATTCACCTTTAGTGTAGTTTTAAAACCATCTATTGTCAATCATTTATCAT
GGGAATACATTGCAAATCAAGGTACATTGGAATCAATCTTGGAATATTTATCAAAGAACA
ATTTGTATCGTGTTGATTTCTATCATCTCTATCATAGATATACCGATAAGAAAGTTTGGG
ATAAAGTAATTGAACTCTTAAAGAAATTGAAATTCTATGAATCTATCACTTGGTCATTCT
CTATTCATCATAAGAATTTCGTTTACTTGAAAGATTACCTCTCTGAACAAATTCATTCCT
TATCAATGAAATCAATCGATGCACCATCCATTTATGTTGATCCATTTGAAAATAACTTCA
TCAAATTCTTGGAATACTCTCCATTGGTTAATTCAAGAACTCATCAAATTGGTGATGAAA
GAAAGATTCTTAATAATAAATTATCAAATCAATATTATGAATTCTGTAGTTTACTTTCAT
TGAAATTAAATCCATCCGATACTGAATTACTTTCTTTAGCTTATTATTTATTACTTCAAG
ATAGATTTGATGAATCAATTAAAATTATGAAGAGAATTGGTAAACATCCAGTTTCAATTC
CAAAATTAATTTCTTCTTCAACCACTACTGATTCAAAATCAACTCATTCATCAGTAATTT
CTTCTTCTTCCTCTTCAAATTTATCAACCACTACTGATAGTTCAAAAGNATAAAAAGAAA
CTGAAAAAGAAGAAAAACAAGNANAAAAAGAAAGAAAA
Length of connected seq. 1348
Full length Seq ID -
Full length Seq. -
Length of full length seq. -