VHP647 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHP647
Library	VH (Link to library)
Clone ID	VHP647 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	-
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHP6-B/VHP647Q.Seq.d/
Representative seq. ID	VHP647P (Link to Original site)
Representative DNA sequence	>VHP647 (VHP647Q) /CSM/VH/VHP6-B/VHP647Q.Seq.d/ AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCXXXXXXXXXXTCATCCAAAGATGA TCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCACGAATGGGATAAAAATGATGCCAT GAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAA AGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCAC CAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGT CACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCG TGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGT AGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAG AGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCA TTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCA AGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAA GAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCC AGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAA
sequence update	2002.10.25
Translated Amino Acid sequence	LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFRRAIESVNVIVGNTEDKEFGDVTVS--- ---SSKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSF VGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPT LLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTAD LRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLti valxfs
Translated Amino Acid sequence (All Frames)	Frame A: nsrvqkkstkwlisqsikfvplwtvvkiseicllllmsitvkplyqilskelvllpik flvidichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnfsilsipqvtlis vqkllpsvllmvlslsiaskvfaykpklyyvkpslnvsnqsysstksivsynsntl kklislsvellnpsmsllvtlkirnsvmslyp--- ---SSKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSF VGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPT LLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTAD LRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLti valxfs Frame B: tleckkskvqngfhnrsnschygpskyqkyvcycscrsrnhfirffnpkswyycrs fwyeiyvmsctrawyhhificitslrnakgrqitswlyftrifnqsyrfprsrfq frsnccppcywcfsryrlrrrclrtnrncitssrrtyqtslirqqsrsflirtpikh rslslfpsyirqchcwhrgirchci--- ---hpkmiqklvltislittngikmmptfglsvqkvtvpisssmspkvfnimklkils lvlsngppkkvlfvmktevsvsifmmspstlmpstevvvkssqllvvysmllnlppql snqstkllpqktllvvftlysivvevlllvknvvsvphyslskliyqynpsvspli yvptlpvklshnvssiiglqlvlstkirkplkslpperekvpqksqiltnstknskqf kshxsfq Frame C: LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFRRAIESVNVIVGNTEDKEFGDVTVS--- ---iqrskssclsr*prmgkchehlvfrsrrrcqsprqchqrcsifenrffr wcfpmghqrrccl*kherypfqslchpphchpqrwwsnhpncssctlccinclpns lrtnllsrnycprkrywwyllctqssrycywrtsyrfpiilcqssftsirilrfhrf tfphcrssfptmclrslgfnwccqqreshsrfshqkekrfsprnprsqiprktlnnl srtxvfk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHQ473 (VHQ473Q) /CSM/VH/VHQ4-D/VHQ473Q.Seq.d/ 2631 0.0 VHP859 (VHP859Q) /CSM/VH/VHP8-C/VHP859Q.Seq.d/ 2631 0.0 VHQ491 (VHQ491Q) /CSM/VH/VHQ4-D/VHQ491Q.Seq.d/ 1449 0.0 VHQ483 (VHQ483Q) /CSM/VH/VHQ4-D/VHQ483Q.Seq.d/ 1449 0.0 VHQ434 (VHQ434Q) /CSM/VH/VHQ4-B/VHQ434Q.Seq.d/ 1449 0.0 VHQ410 (VHQ410Q) /CSM/VH/VHQ4-A/VHQ410Q.Seq.d/ 1449 0.0 VHQ323 (VHQ323Q) /CSM/VH/VHQ3-A/VHQ323Q.Seq.d/ 1449 0.0 VHQ288 (VHQ288Q) /CSM/VH/VHQ2-D/VHQ288Q.Seq.d/ 1449 0.0 VHQ287 (VHQ287Q) /CSM/VH/VHQ2-D/VHQ287Q.Seq.d/ 1449 0.0 VHQ286 (VHQ286Q) /CSM/VH/VHQ2-D/VHQ286Q.Seq.d/ 1449 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446824) Dictyostelium discoideum cDNA clone:ddv63o22, 3' ... 1449 0.0 1 (BJ446813) Dictyostelium discoideum cDNA clone:ddv63m22, 3' ... 1449 0.0 1 (BJ446806) Dictyostelium discoideum cDNA clone:ddv63k22, 3' ... 1449 0.0 1 (BJ446805) Dictyostelium discoideum cDNA clone:ddv63k21, 3' ... 1449 0.0 1 (BJ446779) Dictyostelium discoideum cDNA clone:ddv63f24, 3' ... 1449 0.0 1 (BJ446777) Dictyostelium discoideum cDNA clone:ddv63f22, 3' ... 1449 0.0 1 (BJ446756) Dictyostelium discoideum cDNA clone:ddv63b20, 3' ... 1449 0.0 1 (BJ446732) Dictyostelium discoideum cDNA clone:ddv63m17, 3' ... 1449 0.0 1 (BJ446654) Dictyostelium discoideum cDNA clone:ddv63m09, 3' ... 1449 0.0 1 (BJ446612) Dictyostelium discoideum cDNA clone:ddv63d10, 3' ... 1449 0.0 1
dna update	2008.12.20
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AY391422_1(AY391422\|pid:none) Danio rerio eukaryotic translation... 303 1e-80 AY069933_1(AY069933\|pid:none) Rana sylvatica eukaryotic translat... 301 3e-80 BC089730_1(BC089730\|pid:none) Xenopus tropicalis MGC108369 prote... 298 3e-79 BT045031_1(BT045031\|pid:none) Salmo salar clone ssal-rgf-510-120... 297 7e-79 BC060707_1(BC060707\|pid:none) Mus musculus eukaryotic translatio... 296 9e-79 AK161993_1(AK161993\|pid:none) Mus musculus 12 days embryo male w... 296 9e-79 AK032997_1(AK032997\|pid:none) Mus musculus 12 days embryo male w... 296 9e-79 (P05197) RecName: Full=Elongation factor 2; Short=EF-2;... 296 9e-79 AJ278147_1(AJ278147\|pid:none) Rattus norvegicus partial Ef-2 gen... 296 9e-79 BT071866_1(BT071866\|pid:none) Salmo salar clone ssal-rgf-501-088... 296 9e-79
protein update	2009. 7.21
PSORT	psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00 nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: cytoplasmic 36.0 %: nuclear 4.0 %: extracellular, including cell wall 4.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for VHP647 is cyt
5' end seq. ID	VHP647F
5' end seq.	>VHP647F.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCNNNNNNNNNN
Length of 5' end seq.	646
3' end seq. ID	VHP647Z
3' end seq.	>VHP647Z.Seq NNNNNNNNNNTCATCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCA CGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGC CAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTT CGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGG TATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGG TCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAAC TCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTAT TTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTC CCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGA TTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTC AATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAG AAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAAT TTAAGTCGCACTTNAGTTTTCAAA
Length of 3' end seq.	744
Connected seq. ID	VHP647P
Connected seq.	>VHP647P.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCC----------TCATCCAAAGATGA TCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCACGAATGGGATAAAAATGATGCCAT GAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAA AGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCAC CAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGT CACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCG TGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGT AGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAG AGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCA TTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCA AGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAA GAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCC AGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAA
Length of connected seq.	1370
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas