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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP639
Library VH
(Link to library)
Clone ID VHP639
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16441-1
Original site URL
Representative seq. ID VHP639P
(Link to Original site)
Representative DNA sequence 
>VHP639 (VHP639Q) /CSM/VH/VHP6-B/VHP639Q.Seq.d/
ACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAGATTTCATCTATTTTA
TTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAATACTATTCCAACTTAT
AAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACAAATAAAGATGATTAT
GTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCAACAAATGGTGGTATT
GATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTATGGTAATGCAGGATAT
TATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTATGGAAAAACCCAAATT
TCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTTTTTCCACATAAAGTT
GTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCACGTTCCGATAATTTC
ATTTTAATTAGTGAAGGTTTTGGTTTAACATGGAACAATGCATCATCCAATGGTGATGTT
TTATTCACACCAGGTGGTTCAAGCTTTCCAACCGACCCATTATGGGATCCATCAGAGAAA
TCTGCAGTGTTTTTCGCAATTTTAGCATCAAAAACAGXXXXXXXXXXAGGATGAATATGA
TATCGGTCAAATGATTGGTGTTGATTTAACAAATGTATTGCCATCTCCTTGCGATGATTC
CTCAATGCAATCTTATACCACTCGTTGTATTTTAGGTGAAAAAACAACTTATAGAACTGT
TAAACCAAATACCAATTGTTATATGACCCAACAAGCACAAATTTCAAATAAATATTGTGA
ATGTACAGTCGAAGATTTTGAATGTGATATTGGTTACGAAAGTGCAGACGATAGCAGTTC
CGATAATGATGGTTCTACCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTGTCG
TAAATCAATTGCTTCACAATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCAAAC
CTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGTTAA
TGCAACTTATTCACCAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAA
AGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGCTTTAGCTGGTCTTGGTGGTTTTGG
TTTCTACGTTTTTAAGAATCCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTC
AAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGATGA
ATTTGGTATTGAAGATGATGATGCTCAAATTTTAAANATAANATTTACAAGATAACGAAG
ATTTTAAAAAAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
TICLYKQIGGNYKMKISSILFIFIAIIVGLALSQNTIPTYKQNSINWKQFQPLYTNKDDY
VLIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFPSYGKTQI
SVSNDAGQTFSTSAVFPHKVVSVSPHLDIEGLVIARSDNFILISEGFGLTWNNASSNGDV
LFTPGGSSFPTDPLWDPSEKSAVFFAILASKT---

---DEYDIGQMIGVDLTNVLPSPCDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQAQ
ISNKYCECTVEDFECDIGYESADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITEE
NCTPGQTYIKSKGFRRVAATQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILAL
AGLGGFGFYVFKNPDFKQKLLKMVGFSKVGPKYSVIGIKPNSLADDEFGIEDDDAQILXI
XFTR*rrf*kki
Translated Amino Acid sequence (All Frames) 
Frame A:
TICLYKQIGGNYKMKISSILFIFIAIIVGLALSQNTIPTYKQNSINWKQFQPLYTNKDDY
VLIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFPSYGKTQI
SVSNDAGQTFSTSAVFPHKVVSVSPHLDIEGLVIARSDNFILISEGFGLTWNNASSNGDV
LFTPGGSSFPTDPLWDPSEKSAVFFAILASKT---

---rmnmisvk*lvli*qmychllamipqcnliplvvf*vkkqliellnqipivi*pnkh
kfqinivnvqskilnvilvtkvqtiavpimmvlplvfhldlqnn*ivvnqllhnmfqslk
kivhqvkpisnqkvseeslphnv*vvlmqlihqrlscvhqkilqvvakvgslvllllfll
*lvlvvlvstflriqisnkny*kwlvfqrsvqnivlsvlnqth*lmmnlvlkmmmlkf*x
*xlqdnedfkkk

Frame B:
lsvyinkleeiik*rfhlfylfl*rllla*hfhkilfqlisktaligsnfnhyiqikmim
y*l*iqdqrmf*kdqqmvvlighqmylinkeilfmvmqdiikemiilwl*ishlmekpkf
qyqmmqvkhfqpqqffhiklyqfhhi*ilrv**lhvpiisf*lvkvlv*hgtmhhpmvmf
yshqvvqafqpthygihqrnlqcfsqf*hqkq---

---g*i*yrsndwc*fnkciaislr*flnailyhslyfr*knnl*nc*tkyqllydptst
nfk*il*mysrrf*m*ywlrkcrr*qfr**wfylwysiwifrtiels*incfticsnh*r
klytrsnlyqikrfqksrchtmcrwc*cnlftrdchvsikkffkwwqrldrwccycyscf
swswwfwflrf*esrfqtkiikngwffkgrski*cyry*tklis***iwy*r**csnfkx
xiykitkilkkn

Frame C:
ylfi*tnwrkl*nedfiyfiyfysdycwlstftkyysnl*akqh*leaistiiyk*r*lc
incrykikecfkkinkwwy*lvikct**trkyylw*crilskr**yygckfpilwknpnf
sik*crsnifnlssfst*scisfttfry*gfsdctfr*fhfn**rfwfnmeqciiqw*cf
ihtrwfklsnrpimgsireicsvfrnfsikn---

---DEYDIGQMIGVDLTNVLPSPCDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQAQ
ISNKYCECTVEDFECDIGYESADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITEE
NCTPGQTYIKSKGFRRVAATQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILAL
AGLGGFGFYVFKNPDFKQKLLKMVGFSKVGPKYSVIGIKPNSLADDEFGIEDDDAQILXI
XFTR*rrf*kki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP639 (VHP639Q) /CSM/VH/VHP6-B/VHP639Q.Seq.d/                       2674   0.0
VHD665 (VHD665Q) /CSM/VH/VHD6-C/VHD665Q.Seq.d/                       2658   0.0
VHQ202 (VHQ202Q) /CSM/VH/VHQ2-A/VHQ202Q.Seq.d/                       1451   0.0
VHP738 (VHP738Q) /CSM/VH/VHP7-B/VHP738Q.Seq.d/                       1451   0.0
VHO888 (VHO888Q) /CSM/VH/VHO8-D/VHO888Q.Seq.d/                       1451   0.0
VHK806 (VHK806Q) /CSM/VH/VHK8-A/VHK806Q.Seq.d/                       1451   0.0
VHD543 (VHD543Q) /CSM/VH/VHD5-B/VHD543Q.Seq.d/                       1451   0.0
VHB825 (VHB825Q) /CSM/VH/VHB8-B/VHB825Q.Seq.d/                       1451   0.0
VFI623 (VFI623Q) /CSM/VF/VFI6-A/VFI623Q.Seq.d/                       1451   0.0
CHL654 (CHL654Q) /CSM/CH/CHL6-C/CHL654Q.Seq.d/                       1451   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446532) Dictyostelium discoideum cDNA clone:ddv63c02, 3' ...  1451   0.0    1
(BJ446342) Dictyostelium discoideum cDNA clone:ddv62m10, 3' ...  1451   0.0    1
(BJ446336) Dictyostelium discoideum cDNA clone:ddv62l09, 3' ...  1451   0.0    1
(BJ445893) Dictyostelium discoideum cDNA clone:ddv60p22, 3' ...  1451   0.0    1
(BJ443182) Dictyostelium discoideum cDNA clone:ddv52l02, 3' ...  1451   0.0    1
(BJ438791) Dictyostelium discoideum cDNA clone:ddv38a18, 3' ...  1451   0.0    1
(BJ438731) Dictyostelium discoideum cDNA clone:ddv38e11, 3' ...  1451   0.0    1
(BJ437433) Dictyostelium discoideum cDNA clone:ddv34b08, 3' ...  1451   0.0    1
(BJ432261) Dictyostelium discoideum cDNA clone:ddv18m06, 3' ...  1451   0.0    1
(BJ382707) Dictyostelium discoideum cDNA clone:ddc45k14, 3' ...  1451   0.0    1
dna update 2008.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159157_1(AF159157|pid:none) Hydra vulgaris head-activator bind...    77   2e-12
AB093294_1(AB093294|pid:none) Mus musculus mRNA for mKIAA1329 pr...    70   2e-10
(Q9EPR5) RecName: Full=VPS10 domain-containing receptor SorCS2; ...    70   2e-10
(Q9UPU3) RecName: Full=VPS10 domain-containing receptor SorCS3; ...    67   1e-09
(Q95209) RecName: Full=Sortilin-related receptor; AltName: Full=...    67   2e-09
AF284755_1(AF284755|pid:none) Mus musculus VPS10 domain receptor...    66   3e-09
(Q9JLC4) RecName: Full=VPS10 domain-containing receptor SorCS1; ...    66   3e-09
BC156053_1(BC156053|pid:none) Synthetic construct Homo sapiens c...    65   8e-09
AB037750_1(AB037750|pid:none) Homo sapiens mRNA for KIAA1329 pro...    64   1e-08
AY099453_1(AY099453|pid:none) Homo sapiens VPS10 domain receptor...    63   2e-08
protein update 2009. 7.21
PSORT 

 psg: 0.65  gvh: 0.69  alm: 0.15  top: 0.40  tms: 0.13  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 28.0 %: endoplasmic reticulum
	 12.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear
	  4.0 %: peroxisomal

>> prediction for VHP639 is mit
5' end seq. ID VHP639F
5' end seq. 
>VHP639F.Seq
ACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAGATTTCATCTATTTTA
TTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAATACTATTCCAACTTAT
AAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACAAATAAAGATGATTAT
GTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCAACAAATGGTGGTATT
GATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTATGGTAATGCAGGATAT
TATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTATGGAAAAACCCAAATT
TCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTTTTTCCACATAAAGTT
GTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCACGTTCCGATAATTTC
ATTTTAATTAGTGAAGGTTTTGGTTTAACATGGAACAATGCATCATCCAATGGTGATGTT
TTATTCACACCAGGTGGTTCAAGCTTTCCAACCGACCCATTATGGGATCCATCAGAGAAA
TCTGCAGTGTTTTTCGCAATTTTAGCATCAAAAACAGNNNNNNNNNN
Length of 5' end seq. 647
3' end seq. ID VHP639Z
3' end seq. 
>VHP639Z.Seq
NNNNNNNNNNAGGATGAATATGATATCGGTCAAATGATTGGTGTTGATTTAACAAATGTA
TTGCCATCTCCTTGCGATGATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAGGT
GAAAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCCAACAAGCA
CAAATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTAC
GAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGGA
TCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAATCACTGAA
GAAAATTGTACACCAGGTCAAACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGCC
ACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATGTGTCCATCA
AAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGCT
TTAGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCAGATTTCAAACAAAAA
TTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAAA
CCAAACTCATTAGCTGATGATGAATTTGGTATTGAAGATGATGATGCTCAAATTTTAAAN
ATAANATTTACAAGATAACGAAGATTTTAAAAAAAAATA
Length of 3' end seq. 759
Connected seq. ID VHP639P
Connected seq. 
>VHP639P.Seq
ACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAGATTTCATCTATTTTA
TTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAATACTATTCCAACTTAT
AAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACAAATAAAGATGATTAT
GTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCAACAAATGGTGGTATT
GATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTATGGTAATGCAGGATAT
TATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTATGGAAAAACCCAAATT
TCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTTTTTCCACATAAAGTT
GTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCACGTTCCGATAATTTC
ATTTTAATTAGTGAAGGTTTTGGTTTAACATGGAACAATGCATCATCCAATGGTGATGTT
TTATTCACACCAGGTGGTTCAAGCTTTCCAACCGACCCATTATGGGATCCATCAGAGAAA
TCTGCAGTGTTTTTCGCAATTTTAGCATCAAAAACAG----------AGGATGAATATGA
TATCGGTCAAATGATTGGTGTTGATTTAACAAATGTATTGCCATCTCCTTGCGATGATTC
CTCAATGCAATCTTATACCACTCGTTGTATTTTAGGTGAAAAAACAACTTATAGAACTGT
TAAACCAAATACCAATTGTTATATGACCCAACAAGCACAAATTTCAAATAAATATTGTGA
ATGTACAGTCGAAGATTTTGAATGTGATATTGGTTACGAAAGTGCAGACGATAGCAGTTC
CGATAATGATGGTTCTACCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTGTCG
TAAATCAATTGCTTCACAATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCAAAC
CTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGTTAA
TGCAACTTATTCACCAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAA
AGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGCTTTAGCTGGTCTTGGTGGTTTTGG
TTTCTACGTTTTTAAGAATCCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTC
AAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGATGA
ATTTGGTATTGAAGATGATGATGCTCAAATTTTAAANATAANATTTACAAGATAACGAAG
ATTTTAAAAAAAAATA
Length of connected seq. 1386
Full length Seq ID -
Full length Seq. -
Length of full length seq. -